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●I-TASSER ●QUARK ●LOMETS ●COACH ●COFACTOR ●MetaGO ●MUSTER ●CEthreader ●SEGMER ●FG-MD ●ModRefiner ●REMO ●DEMO ●SPRING ●COTH ●BSpred ●ANGLOR ●BSP-SLIM ●SAXSTER ●ThreaDom ●ThreaDomEx ●EvoDesign ●GPCR-I-TASSER ●BindProf ●BindProfX ●SSIPe ●ResQ ●IonCom ●STRUM ●DAMpred

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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13

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Modeling of Pfam protein domain faimilies by C-I-TASSER (Page 34)

Search by Pfam ID:

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# Pfam ID C-I-TASSER models ranked
by estimated TM-score
(click to view)		 Full name and representative sequence
3301 PF11765
(Hyphal_reg_CWP)
 click to view
Estimated TM-score=0.57;
hard target.		 >Hyphally regulated cell wall protein N-terminal (Length=323)
FALEISTNTVDRGTISLNVGDVTVDSGASWSIINNAVSAFVGSLDVQSNAGLYITSTSPLIALQVTLTSLLNTITNDGTI
VFDSRDSLTASTYNLVGATFTNTGDMFLAASGIVPSTMSVTAANWDNSGLMVFSQNQRSSGVVNLGAVGGSITNDGQICL
ENEVYQQTTSINGAGCITADQDSTIYISNSLLPVANTQNFYLADSQSSIVAQALSTPQTFNVYGFGNGNMVGITLPLTAS
VLPPNPAYSYNAATGILTLRNLLVTQNFNIGTGYDPSLFSIVTDSGAGLPSTLLGSVTYSGPVPAQTLPASCQIVCQPIP
DTP
3302 PF11376
(DUF3179)
 click to view
Estimated TM-score=0.57;
hard target.		 >Protein of unknown function (DUF3179) (Length=296)
RDGIPSIDKPRFVSVPEAGKFLQDSDIVLGLDINGDIRAYPLQILVWHEIVNDKVGGVPVAVTYCPLCFTNQVFNRMVDG
QTLEFGTSGKLYNNNLVMYDRASESLWSQALGEGIVGKYAGTKLERIPFDLAYWREWKGLYPDAKVLSADTGFGRPYGAD
PYGDYYTSPSIYFPISNHDSRLGPKEIVIGLEHDGVYRAYQLSKIEEEHVINDDLAGRPVLIASHYQFMTRVFERTVDDQ
VLEFEYKDGVMTDRQTGSVWGFDGVATDGEMTGKRLQRLPLDQGFWFAWAAFHPGT
3303 PF11354
(DUF3156)
 click to view
Estimated TM-score=0.57;
very hard target.		 >Protein of unknown function (DUF3156) (Length=161)
QNLSPYCCERLSAESLQVTLPDGLQIDVCEKPKTLFLAYIVSCCFRLQGMTSLKEKIVIKAKIKGIFRRKTVTYYCYHGA
EYGQQIIDLLNQYPLIGETLAELDFRDLVLNIHQGQWQLEVEHFAASEIVSRLPASRRYLRLTSEQRYLLLSSLLMFSQL
M
3304 PF11343
(DUF3145)
 click to view
Estimated TM-score=0.57;
hard target.		 >Protein of unknown function (DUF3145) (Length=157)
VLFVHSAPTALCPHVEWAIGSVVDKRTDLEWTAQPAAPGMFRAELSWTGKPGTGAQLASALRGWAHLRYEVTEEPSQGVD
GGRWSHTPELGIFHATTDVHGNIMVSEDRIRYAYESGAGDPSAVYHELSLALGEAWDEELEPFRHAGEGAPVRWLHQ
3305 PF11317
(DUF3119)
 click to view
Estimated TM-score=0.57;
very hard target.		 >Protein of unknown function (DUF3119) (Length=129)
VVPEPDYRIPIVLLGATGALVYTDNLVAAVPVGLLGLLLLVQATRVRFVFDDEALEVKVGSELQESGENVFVGGKNRWKY
SSFVNWEFWWPNFPILVYFKETQTKPEGQIHFFPIIFNGKQLYDVMVER
3306 PF11286
(DUF3087)
 click to view
Estimated TM-score=0.57;
hard target.		 >Protein of unknown function (DUF3087) (Length=165)
MQLIQIDKARYRKHLNRVIVGCAASLAIGSLAISQTLIALFPDESGSHFHWNLLGVIVTSIGIGWLLNKYRTHPFMTEVV
YVWELKQALNKITRKMAKLKAAGREGNPDALLAIHYSYAGSRLLWQLDDNTITMDDLAIKQAELDSVAAKYNLTLNADDY
DDAIL
3307 PF11284
(DUF3085)
 click to view
Estimated TM-score=0.57;
hard target.		 >Protein of unknown function (DUF3085) (Length=87)
PGLWLVGDEGVYIMSNGKLAEGKRPLVVYAQECDPKTNPDYWHYKRQHFGGDDGVEFLDAAELVKLINAAPSATHLTITM
TDSALSL
3308 PF11209
(DUF2993)
 click to view
Estimated TM-score=0.57;
hard target.		 >Protein of unknown function (DUF2993) (Length=208)
VLDRVAARVVADQIATRAQNAENLAERPDVSLGGFPFLTQVVAGRYRDVELEVHGYEQDGTRVDRVHADLTGVRLPLSDV
LRGEVERVPVDRVDAEVDLTFNDLNAYLASQNSQLKVSPAGQGIQIGGTVDLLGTPYPVSGTADIGVAPDAVTFTPRELA
PDLEALIPPGLLDTVRSLLTVRVPVAGLPFNMKLRSATVRADRLTFAA
3309 PF11193
(DUF2812)
 click to view
Estimated TM-score=0.57;
hard target.		 >Protein of unknown function (DUF2812) (Length=105)
DVQKTEQWLTDQAKAGFRVKEMHRFKRGFTFEKGQPKDVTYRIGYDKIKPATLSNTMRNDGWEKVAQSGKWYVIANERPQ
AEVTTSTSRDAIIKRNNFIYYAFMA
3310 PF10927
(DUF2738)
 click to view
Estimated TM-score=0.57;
easy target.		 >Protein of unknown function (DUF2738) (Length=244)
TSFDKTKLCFGKPTKFSKVAGAHIINIRYEDKVTKAKVPLSFHTPILFSFGAKTSSFQDGDDNWSMSLMCYDTNKGPSPQ
ETAFIKALEAIECRVKKHLKDKDVKKATEMYQDPLIDMMSMFYRKMEDGVVVPDRAPALYPKLLKSKNNPGQVATGFYKF
VRGKEVKIPVVKEKCRVLCDLAIDSIFLGAKPSIQIKLVDVFLVELIGERKKTLKLSKLPSAVQAEINKYSADTDEEEEE
EEDN
3311 PF10911
(DUF2717)
 click to view
Estimated TM-score=0.57;
hard target.		 >Protein of unknown function (DUF2717) (Length=78)
MLTPIKKYMENPQDIPNVPRATMEYLQVQYNAGYAIQSGLINRLKQAGWSESYIAGFLAGLNYASQTLDDMEAIRKEQ
3312 PF10841
(DUF2644)
 click to view
Estimated TM-score=0.57;
hard target.		 >Protein of unknown function (DUF2644) (Length=59)
ELITNDNGRLSTTAFIQFFGALLMAGILCFCVWLDRPYVPEMFMTFAIFCAGGAATKGF
3313 PF10725
(DUF2517)
 click to view
Estimated TM-score=0.57;
hard target.		 >Protein of unknown function (DUF2517) (Length=61)
YREYSWHQVLLRRIGAVALGVIAFPVMLFRRDRARFYSYLHKVWLKTSDKPVWLECSEMAA
3314 PF10572
(UPF0556)
 click to view
Estimated TM-score=0.57;
hard target.		 >Uncharacterised protein family UPF0556 (Length=153)
LLVLLSALGFVCASGESAKTVDFNVKPGGVVHSFSEKIKEYECIFTYASQGGTNEQWQMSVGLSDDDRLFSCSVWRPQGK
SYLFFTQFKAEIKGAKIEYASAYSQAAVGGQKDVPLKDEEYAVGDTTVTHKDGKFRAELSKLTLIGRTRHDEL
3315 PF10442
(FIST_C)
 click to view
Estimated TM-score=0.57;
hard target.		 >FIST C domain (Length=141)
ALALYKEYLGDKATDLPASGLLFPLAMRASAKDDKVLVRTLLAVDHDKNSMTFAGDVPKGHLVQLMKANFERLIGGAESA
AKAAKPAPSTKTDAHLAVAISCVGRRLVLGQRTEEEVEAVLDVLPKDTKITGFYSYGEISP
3316 PF10361
(DUF2434)
 click to view
Estimated TM-score=0.57;
easy target.		 >Protein of unknown function (DUF2434) (Length=293)
YSNGTFSNGSYCFLAFEPYTPQLLSNGTFLNETSCYSPINPMGTRSKVGLFFACFFGLSIMFTFVNLRKHGRLFLPQEKR
FHAIGRRWQWYWMLVVAGFAIISAIAGVDVDRYYVPELPIVLNNFFWILMLPTTMCVVWESVRHWGSWQERQLVDPNSFA
LKQDDRRSKVEFWIPLVFYFFTWMNFFMVVPRPWGAIELQRDPEQTAQKAEPAATDLRFKIGAFFLFGSWLTTIFSLWHS
IKHYKSRNRGILNRIIGFIKYIPPRFIITIPLSLVMIGYEAASAFEFAISPMK
3317 PF10285
(Luciferase_cat)
 click to view
Estimated TM-score=0.57;
trivial target.		 >Luciferase catalytic domain (Length=296)
PLCADPFSPEIEQLCQALVREAQDDKTLCFENFTKPCPQLTKKQVELCKGFDYGDKTLKLPCGPLPWPAGLPEPGYVPKT
NPLHGRWITVSGGQAAFIKEAIKAGMLGAAESHKIMADTDHHQTGGMYLRINQNGDVCTVDASVAKFARAKRTWKSGHYF
YEPLVSGGNLLGVWVLPEEYRKIGFFWEMESGRCFRIERRAFERNGLMIMRQATEVAGKISFVFYVKVSNDPESKPIPLQ
SRDYTALAGLDNVPDSLGNPYTCEAKDLDYPIKRDTWLDKNQEEMLKQRSIVGTAF
3318 PF10124
(Mu-like_gpT)
 click to view
Estimated TM-score=0.57;
easy target.		 >Mu-like prophage major head subunit gpT (Length=289)
LATLQTSFNALFTSGLGMAEPQSDKIATTVPSSTAQNEYGWLGKLPSMREWLGDRVVNGVQAHGYAIKNRDFEQTIGVDR
NDIEDDNLGIYNPLFTEMGRSTTAHREELVFALLAAGFTTPCYDGQNFFDTDHPVIDENGEEVSVSNMQAGAGTPWFLID
DTRALKPIIFQDRKPPQFVAKDSPTDDNVFSRKEFLYGVDCRRNVGFGFWQFAFGSKDTLDAANYAAARASMMGLKGDHG
RPLGIRPTLLVVPPSLESAALKLLNNDRAANGETNEWKDTAKLIVVPWL
3319 PF10097
(DUF2335)
 click to view
Estimated TM-score=0.57;
hard target.		 >Predicted membrane protein (DUF2335) (Length=50)
PPPDVIRGYDQILPGGAERIFSMAEKEQAHRHKMDSTAVNGAIRKDKRGQ
3320 PF10074
(DUF2285)
 click to view
Estimated TM-score=0.57;
hard target.		 >Uncharacterized conserved protein (DUF2285) (Length=103)
VPLDADGFDRIEAVTRLWRALHGRRVLPDTRLTVQQRRRLRHMLQAVDGSMNGASYREIANVIYGAPRVAADSWKTSALR
DSTIDLVKDGRAMIAGGYRKLLR
3321 PF10073
(DUF2312)
 click to view
Estimated TM-score=0.57;
trivial target.		 >Uncharacterized protein conserved in bacteria (DUF2312) (Length=71)
AERLGSFIERIETLEEEKSEFTEQIKEVKEEAKAQGFEPKVITAVLKIRKQPPGEQEEFNTLLDTYLTALG
3322 PF10045
(DUF2280)
 click to view
Estimated TM-score=0.57;
hard target.		 >Uncharacterized conserved protein (DUF2280) (Length=103)
MAALRSEVKAYIVQALACFDTPSQVAEAVKTEFGIVITRQQCESHDPTKYAGKGLAQKWADLFHECRKRFREETADIPIA
NRAYRLRALGRMAEKAENMKNMA
3323 PF09988
(DUF2227)
 click to view
Estimated TM-score=0.57;
very hard target.		 >Uncharacterized metal-binding protein (DUF2227) (Length=165)
PSGRTHDRITLWALPFVAGVAFWQTRSSSVTLLVAGGFMFGGLMFGPDLDIYSRQYQRWGYLRWIWLPYQKSLRHRSFLS
HGPIIGTTLRVIYLSCLLAIAAFIILVIFEKLGNTRFNWSGLGENIQKSLVSYDKEYLALFLGLELGAMSHSLSDWCGSA
YKRMQ
3324 PF09793
(AD)
 click to view
Estimated TM-score=0.57;
hard target.		 >Anticodon-binding domain (Length=86)
PVDIKKLREREEAKIRQLREQEANKGKGVSREAQQIFDALKRLLPTRWHGQEIVVSDAVIISPPYTVNDCKAPKGKDQAL
DRIRMV
3325 PF09775
(Keratin_assoc)
 click to view
Estimated TM-score=0.57;
hard target.		 >Keratinocyte-associated protein 2 (Length=128)
SSGTSFVLAAILTVLLFSGMQMYRQWLASSQLHTILGGYLGSVLFILILTAVGNIESIAFGKGFQTKLFPEVAVCLVTAL
FAAGMIHRVCTTTCLIFSLVALYYINRVSQATHERPAPVYTAPSKKKK
3326 PF09621
(LcrR)
 click to view
Estimated TM-score=0.57;
hard target.		 >Type III secretion system regulator (LcrR) (Length=138)
RDPLTPWFEEQGYSVQPHCMGNSPIPLGWRVWYEGCEIAWRYDAPRVWIVMLRRTRQRRGLANPFAPLYLLATATMAMLG
PGSRLYGQVNTLVDSPLNDERLARFYHRWTGANEVVPGWFELEASCVISLHQMRKQQK
3327 PF09602
(PhaP_Bmeg)
 click to view
Estimated TM-score=0.57;
hard target.		 >Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg) (Length=165)
MSTVKYDTVIDAMWEQWTKGLQNIAEGNKQIEQWTLKALEQQQEFVTKAVEQLQATDKQWKAELEDLQQKTVENLRKTAG
NAVADSYEEWTNRTHEALNKLQELSLNQSKSSYSLVKQAQEQYHQVVTQLVEEQKKTRQEFQHVSDAYVEQVKSLQKSFA
QSLEQ
3328 PF09499
(RE_ApaLI)
 click to view
Estimated TM-score=0.57;
hard target.		 >ApaLI-like restriction endonuclease (Length=189)
VIYKKIKEIANKYSNKLNSQFQKRIVEMQNDDKSHHLIYRVLGIPYDVGNEIDYYQNQVRFLYKYAGSFLEEVTILCFKE
KYPFASKTKVKNTISNIPKTFEIDCLVNNNAYEIKWRDATTDNDHIIKEHTRVKTLISYNYKPIRIMFYYPNRVNSMRIQ
ETLETLYKGVGGEYYYGDSAWSYVKKLQE
3329 PF09476
(Pilus_CpaD)
 click to view
Estimated TM-score=0.57;
hard target.		 >Pilus biogenesis CpaD protein (pilus_cpaD) (Length=207)
IGAAALGGCTHRSQEAEIVTGSLPVDYRARHPIVIQEAAKTTEIFVGHARGGLTTAQRTDIAGLAQAWLSEGTGAITIDT
PTGTPNAQAASVTVRDIQNMLVAAGIPARGVKVQPYHPNDPRQFAPVRVRYARIIADAGPCGLWPEDLGPSVKNKSYFEN
RPYQNFGCAYQRNMAAMVANPADLVQPRAESPSNSARRSQAFTKYRN
3330 PF08875
(DUF1833)
 click to view
Estimated TM-score=0.57;
very hard target.		 >Domain of unknown function (DUF1833) (Length=156)
ALKEAFASAPAGTVILDTLEIWHPTFDEPIRVVRDHADLTARLEAGAPRDGGKRVTFAALAFEFSPPPVDTAPVPEITVT
LDNVGSDITDALEGAAVSQQVIEITWRPYLSTDLNGPHMDPPITMTLTDVEADTMRVTGRARMLDAGNKSFPSITY
3331 PF08745
(PIN_5)
 click to view
Estimated TM-score=0.57;
hard target.		 >PINc domain ribonuclease (Length=217)
RFIMDTTGLTDIQARQSLGQDTICAGMKEILDLIADARLHLQISCYVPFPSVYNELQEFANNNNCDPEVVAKIDTWLVKK
TPDRYEVQIPSRIFHEYVSYMRERINKGMNVAEEAIREASRECLIQNSQAKSKHMVEKDIDREVVGSVVNKFRNKYRSAL
RYGILDSAPDIDVLLLAKELDAAVVAKDYGIQKWAEQLGVRFVPAETFPRMLQEYLR
3332 PF08634
(Pet127)
 click to view
Estimated TM-score=0.57;
easy target.		 >Mitochondrial protein Pet127 (Length=274)
YITSSRDDTLRNIAKENKKKYIGSSSSMTSVLSHFHYLLSAWRPINTSSLSQSFPDQMKTFTRIMRAPAAMFLRYQDGVY
AIDADKEFDTANILMNLGKSMEKLLTLPKEEFERYRRSHENKITPEEESSTPESYHYSTLGDFMMRSQLDAYDPRLPGTG
MFDLKTRAVVSIRMDARNFEQGIGYEIQQRFGRFESYEREYYDMIRSAFLKYSLQVRIGRMDGIFVAFHNIERIFGFQYV
SLPEMDETLHGTSNTTLGDAEFRLSLELWNKILD
3333 PF08593
(DUF1773)
 click to view
Estimated TM-score=0.57;
hard target.		 >Domain of unknown function (Length=55)
HFLFSKNIDFTKRKNPSEAVPPPPLNPETEQPLLPQIGEILDLNVLSQLSFFLPG
3334 PF08560
(DUF1757)
 click to view
Estimated TM-score=0.57;
hard target.		 >Protein of unknown function (DUF1757) (Length=141)
WFKNFAGIRQSDFEMLRVPNPSVEFCIHVTMRSVQTGALLGSVLGPLSAMLFEAKHMNSKKLTDKFVSGGTNGALIGAVM
GPLLTYLALRDMNTVRLYDKCYRLRFDKQQLWQDRTCIVSAALGYLSSGSLGFVVGLDLAT
3335 PF08458
(PH_2)
 click to view
Estimated TM-score=0.57;
easy target.		 >Plant pleckstrin homology-like region (Length=104)
ELLKRTRKGTLHWKRVSVYINKKSQVIVKLKSKHIGGALSKKKKSVVYCVYDEVPAWPGHERDCAEERCYFGLRTAQGLI
EFECENRTSKQKWVDAVQNLLRQV
3336 PF08437
(Glyco_transf_8C)
 click to view
Estimated TM-score=0.57;
easy target.		 >Glycosyl transferase family 8 C-terminal (Length=57)
YTCTKYFLKAKDNSPWKNEPLLDAVTASNMRYCAKHQFHNGQFISGTISYLKYFYKK
3337 PF08407
(Chitin_synth_1N)
 click to view
Estimated TM-score=0.57;
hard target.		 >Chitin synthase N-terminal (Length=72)
KEVQLINGELVLECKIPTILYSFLPRRDEVEFTHMRYTAVTCDPDDFVDRGYKLRQTIGRTARETELFICVT
3338 PF08381
(BRX)
 click to view
Estimated TM-score=0.57;
hard target.		 >Transcription factor regulating root and shoot growth via Pin3 (Length=55)
REWTAQVEPGVQITFVTLPGGGNDLKRIRFSREIFNKWEAQRWWGENYDRIVELY
3339 PF08081
(RBM1CTR)
 click to view
Estimated TM-score=0.57;
hard target.		 >RBM1CTR (NUC064) family (Length=45)
SNSGMGGRGSPSRGRGNYRGPSHGMSVSSWRRDRMSPKHGGYATK
3340 PF08038
(Tom7)
 click to view
Estimated TM-score=0.57;
hard target.		 >TOM7 family (Length=40)
KEWSTWGMKKAKVITHWGFIPLVIVIGMNSEPKPTLYQLL
3341 PF07923
(N1221)
 click to view
Estimated TM-score=0.57;
hard target.		 >N1221-like protein (Length=294)
AYDFEYSDMGPHPEEIDEWFVYQFWQWVRLNSAQRAFEWHWQHEFNAQNAWDDADNDTRTRFIQAAIAGVQSNDAALRSA
SIGKLVYLVLGRWGDTAMTNATSGDNKSVASISQLQAIKAGVECLTSLEGLPVIWETLRNSFELHWSGDPQGQHGNLQEA
QDELMNLMTIMYIAIQETLNDPEDMSSTYGKLLELNPSLVDYMLTATSKLRWDEQNLMPHTQIFLLFWKSILLVFGGSQE
LAAVKKATSETANDGKDRETITASPLDYHVFRQEITSKYPAYVPPQPLIPLEAE
3342 PF07811
(TadE)
 click to view
Estimated TM-score=0.57;
easy target.		 >TadE-like protein (Length=43)
GMTAIEFVVLTPILFFMIFATVQFALYFFADHVAQAAAQAGAR
3343 PF07761
(DUF1617)
 click to view
Estimated TM-score=0.57;
hard target.		 >Protein of unknown function (DUF1617) (Length=143)
MQLTIKNKDLNTLYRVLDKIKVTNMRANRGRAKLLAKVVDKFKEYAKDEGDLIDLYAQKDKDGKFVIDEHKNIKLADPAK
LDEFNGLLNELADEEIVIKGGEYSKRFIDFLNFLEECEDEFTSSEIILIDNILEQFEESKKGE
3344 PF07586
(HXXSHH)
 click to view
Estimated TM-score=0.57;
very hard target.		 >Protein of unknown function (DUF1552) (Length=308)
RMAFIFFPNGAIMPAWRPHGSGEKFELAETLQPLAELKNDILVISGLAQDNGRPKGDGAGDHARSASVYLTSAHPVKTAG
ADIRVGISVDQVAAQHLKGQTRLPSLELGIERGRTAGSCDSGYSCAYSSSISWKSPNTPMAKEIDPRAVFERLFGDAERS
AAERKRRALIRKSVLDFVAEDARRLRNRLGQADRRKLDEYFTSIREVEARIEQAEQAARIERPDIEIPEGIPRDRAEHIR
LMYDLMALAFQTDTTRVITFMLGNAGSNRPYPMVGVNSGHHELSHHRGDENKIAQLKKIDRFLAEQFA
3345 PF07573
(AreA_N)
 click to view
Estimated TM-score=0.57;
very hard target.		 >Nitrogen regulatory protein AreA N terminus (Length=90)
MSGMSHGGAPKAARPTPTAVSASSGYDIADADRSSSSHFHHTSQLSDDFSLGSPLSPPDSAHVQDGLLQDSLFPEWRNAA
PRDGVESPDE
3346 PF07374
(DUF1492)
 click to view
Estimated TM-score=0.57;
easy target.		 >Protein of unknown function (DUF1492) (Length=100)
LLSSPKWSSDKVNGGIKRKQDDVYVELIATAEDIEKKTAEAIRKQRELQNLIDSLENTDSQTILSMVYIDKMTRWQVIDE
LNCSESTYFRLLRVATKELN
3347 PF07332
(Phage_holin_3_6)
 click to view
Estimated TM-score=0.57;
hard target.		 >Putative Actinobacterial Holin-X, holin superfamily III (Length=115)
GELVKDLSTQVSTLVRQELELAKVELTAKGKQAGIGAGMFGGAGLFGLYGVGALVACAILALATAVDGWLAALIVAVVLL
VVAGVLALAGRARARRAGPPMPEQTVETLKEDVRY
3348 PF07330
(DUF1467)
 click to view
Estimated TM-score=0.57;
hard target.		 >Protein of unknown function (DUF1467) (Length=80)
NISTAFAIYFVLWWLVLFLTLPFGVRSQHEDGEGAPGTDPGAPVMARMGRKLIWTTVISAVIFAVAMWAYYQGYFNIERL
3349 PF07297
(DPM2)
 click to view
Estimated TM-score=0.57;
hard target.		 >Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2) (Length=76)
ADRAVGFLLCCISLSIFTYYTLWVIILPFVDSDHFIHQYFLPQEYAIIIPVLAGVTLLCFLSVFIGSVMLKSKKKK
3350 PF07287
(AtuA)
 click to view
Estimated TM-score=0.57;
hard target.		 >Acyclic terpene utilisation family protein AtuA (Length=356)
IANCSGFYGDRLSAAREMVEGGPIDVLTGDYLAELTMMILYKDRQKDPAAGYARTFLRQLEEVLATCVERGIKIVSNAGG
LNPGGLAAAVRALANRLGVRVRVAHIEGDDLLPRLAELQAQGHELRHLDKGMPLRDLKAQVVTANAYLGGWGIAEALRRG
ADVVICPRVTDAALVVGPAAWYFGWARDDWDRLAAAVVAGHIIECGAQCTGGNYSFFREVPNIERIGFPIAEMHEDGSFV
ITKHPGTGGLVSIGTVTAQLLYEIQGPRYLNPDVTARFDTIQLEQEAADRVRVTGVRGEPPPATTKVCINYLGGFRNSVT
FVLTGLDIEEKAAIAQQTLWHLVGGKERFAEVHVDL
3351 PF07240
(Turandot)
 click to view
Estimated TM-score=0.57;
hard target.		 >Stress-inducible humoral factor Turandot (Length=76)
SWDDNTKIKRIQELLTIYNRMAPSLRPDERARMDRFISGYTGEIMVDGVPSQGGARRIFKKILSPAAKSVATGFFT
3352 PF07119
(DUF1375)
 click to view
Estimated TM-score=0.57;
hard target.		 >Protein of unknown function (DUF1375) (Length=53)
NYYPATQFDIFTIKSGGGLYCSPGPGTLIVVPLSIIDLPISLVTDTIMLPADI
3353 PF07105
(DUF1367)
 click to view
Estimated TM-score=0.57;
hard target.		 >Protein of unknown function (DUF1367) (Length=197)
MAQLQLIKQSSGILIPATPETSDLLQSKIKLGAVLVADFKQVRNPAFHRRFFALLNLGFEYWEPTGGAISANERKLVNGY
AKFLAAYGGNESALLDAAEQYLEQIANRRVTNGISLCKSFDAYRAWVTVEAGHYDAIQLPDGTLRKHPRSIAFSSMDEVE
FQQLYKSALDVLWRWILSRTFRTQREAENAAAQLMSF
3354 PF06992
(Phage_lambda_P)
 click to view
Estimated TM-score=0.57;
hard target.		 >Replication protein P (Length=160)
IINGVFSQLLATFPASLANREQNELNEIRRQWVLAFRENGITTMEQVNAGMRVARRQNRPFLPSPGQFVAWCREEASVIA
GLPNTSELVDMVYEYCRKRGLYPDAESYPWKSNAHYWLVTNLYQNMRANALTDAELRRKAADELVHMTARINRGEAIPEP
3355 PF06918
(DUF1280)
 click to view
Estimated TM-score=0.57;
easy target.		 >Protein of unknown function (DUF1280) (Length=218)
KKSRKDRCERVVEAIEGLVGAKNLDRFLTDFVHFIAASEKFSFALALSPWDSFFCTIRWKLSNKFIKEFKDYLNSKLGFD
VFSSRQEIDKIRKNHAPLDDYNINIETTTRCTRKGFEAKVPMAVVSAKNVKNLVERRFQSLQNNSRLQFEYDDEVALGFG
GDKGADVTKLCIVFQNIASPNNPHGILLVGYYTGDDNYANLKSKMRTVFEQVNNIKSI
3356 PF06861
(BALF1)
 click to view
Estimated TM-score=0.57;
easy target.		 >BALF1 protein (Length=181)
MRPAKSTDSVFVRTPVEAWVAPSPPDDKVAESSYLMFRAMYAVFTQDETGLPLPAMVLCRLIKASLKKDKKLYAELACKT
ADIGGKHAHVQLIISVLRAVYDDHYDYWSRLRVVLCYTVVFAVRNYLDDHESAAFVLGAIAHYLALYRRLWFARMGGMPR
SLRRQFPVRWALAGLTYFLKS
3357 PF06758
(Olduvai)
 click to view
Estimated TM-score=0.57;
very hard target.		 >Olduvai domain (Length=61)
EKVQKSSAPREMQKAEEKEVPEDSQEECAITYSNSHGPYDSNQPHRKTKITFEEDKVDSTL
3358 PF06651
(DUF1163)
 click to view
Estimated TM-score=0.57;
easy target.		 >Protein of unknown function (DUF1163) (Length=67)
GGLIGKDIMEDIKEKKEVQFGSRFSLTDCREKTTGIMSYACDEVTLRFEPGLEMKATVFGDHPKCIN
3359 PF06624
(RAMP4)
 click to view
Estimated TM-score=0.57;
hard target.		 >Ribosome associated membrane protein RAMP4 (Length=60)
APKQRMTVANTQFSKNVTNRGNVAKSLKPQEDKYPAAPWLIGLFVFVVCGSAIFEIIRYV
3360 PF06579
(Ly-6_related)
 click to view
Estimated TM-score=0.57;
hard target.		 >Caenorhabditis elegans ly-6-related protein (Length=126)
CMSLSYQTSWKYLQATYIYPKVFTDRCRDPNSERGMPTVMCSSVCVSLMEPDVEAGVFIGFKHIRGCLDRVLRHGFNQSA
LRTHRFHQNNHCRTLSRSALFNPARTTDPPALGDVQLCSCYGDRCN
3361 PF06551
(DUF1120)
 click to view
Estimated TM-score=0.57;
easy target.		 >Protein of unknown function (DUF1120) (Length=111)
VKVTLEAAACTPILSNGGVVNFGSHSVNRLSTQHYTQIGTRNINMTITCESATGIAITARDTRMDSMTTGKDSEGQSGVK
YTLNGGGYISQTTRLFGLGKTKDNKNIGSYA
3362 PF06540
(GMAP)
 click to view
Estimated TM-score=0.57;
hard target.		 >Galanin message associated peptide (GMAP) (Length=61)
SKRELQPEDDMKPGSFDRSIPENNIMRTIIEFLSFLHLKEAGALDRLPDLPAAASSEDIER
3363 PF06527
(TniQ)
 click to view
Estimated TM-score=0.57;
hard target.		 >TniQ (Length=134)
PIRVAPLDGEAIDSWLEALARRVATPVGEVLAALNLPVTRRPSWLVRPSPAQLDTIATVTGLHPDAVLAMTLSRYDGTGL
EIDHPNGRIATSFPFGYRPWSRYCPHCLAHTGGRWQLHWRLGWSFACVRHHCLL
3364 PF06478
(Corona_RPol_N)
 click to view
Estimated TM-score=0.57;
easy target.		 >Coronavirus RPol N-terminus (Length=349)
SSAARLEPCNGTDPDHVSRAFDIYNKDVACIGKFLKTNCSRFKNLDKHDAYYIVKRCTKSVMDHEQVCYNDLKDSGVVAE
HDFFLYKEGRCEFGNVARKDLTKYTMMDLCYAIRNFDEKNCEVLKEILVTLGACNESFFENKDWFDPVENEAIHEVYARL
GPIVANAMLKCVAFCDAIVEKGYIGIITLDNQDLNGNFYDFGDFVKTAPGLGCACVTSYYSYMMPLMGMTSCLESENFVK
SDIYGSDYKQYDLLAYDFTDHKEKLFQKYFKHWDRTYHPNCSDCTSDECIIHCANFNTLFSMTIPNTAFGPLVRKVHIDG
VPVVVTAGYHFKQLGIVWNLDVKLDTMKL
3365 PF06412
(TraD)
 click to view
Estimated TM-score=0.57;
hard target.		 >Conjugal transfer protein TraD (Length=67)
QVERRKRTRHLIELGGLVVKAGIVDLTGDDRAMIYGALLWMAEKLKSDRHEQARALWAAKGKRAFEA
3366 PF06378
(DUF1071)
 click to view
Estimated TM-score=0.57;
easy target.		 >Protein of unknown function (DUF1071) (Length=144)
YFAELASIDVSKHVEKKGRFSYLSWSWAVDQLLKKHPDATWQVVRFDGLPYMKTEVGYFVEVEVTVNNITRSQIHPVLDN
YNKPIAKPTSFQINTSIQRCLAKAIALHGLGLYIYSGEDIPQDDEPKQAAKQLDNVPQQEQARQ
3367 PF06322
(Phage_NinH)
 click to view
Estimated TM-score=0.57;
easy target.		 >Phage NinH protein (Length=60)
MTHTVKTIPDMLIETYGNQTEVARRLKCSRGTVRKYVDDKDGKMHAIVNDVLMVHRGWSE
3368 PF06313
(ACP53EA)
 click to view
Estimated TM-score=0.57;
hard target.		 >Drosophila ACP53EA protein (Length=87)
GVCSQIFLEATSDLTSKAMPIVKTMFECISFKTSENLAALDTRTFKDVASRFLGELVQNPSCLLDLATSIKKILGQHFVR
LKTYRCM
3369 PF06269
(DUF1029)
 click to view
Estimated TM-score=0.57;
hard target.		 >Protein of unknown function (DUF1029) (Length=53)
MITNYEPFILLGIICIALLANIKLSSKVKLDIIFFVQSILFMWFIFHFVHSVF
3370 PF06203
(CCT)
 click to view
Estimated TM-score=0.57;
easy target.		 >CCT motif (Length=43)
REARVSRYKEKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKR
3371 PF06166
(DUF979)
 click to view
Estimated TM-score=0.57;
easy target.		 >Protein of unknown function (DUF979) (Length=312)
EYIYYIAGIFLSIIAFLSFKDKSNSKRLLTGTFWGLFAISFIFGKVIPPMYMGVLVIIIALIAGFGGVRMGSYHQTTEEE
RKASAKKIGNKLFIPALLIPLVTIIGTVVIKDMKIGNLFLLDNKNVTLVSLGVACVVSLIVAMMLTKEKGIQPVKESRRL
LDAIGWAAVLPQMLATLGGLFAVAGVGKVVSDLISSAIPVDNRFFVVLAYVLGMAIFTMIMGNAFAAFPVITAGIGLPLL
VHMHGADPAIMGAIGMFSGYCGTLLTPMAANFNIVPTALLDLSDKYAVIKAQAPTAIILLTVNIFLMYFLVF
3372 PF06149
(DUF969)
 click to view
Estimated TM-score=0.57;
hard target.		 >Protein of unknown function (DUF969) (Length=216)
MWVLIGIPIVVLGFALRFNPLLVVTIAGISTGLAGGMQTVEIISAFGKAFTDNRYMGLIWLTLPVIALLERNGLKEQAKH
LISKIHVATTGRILMLYFFLRQMTAALGLNSLGGHAQMVRPLIAPMAEAAATTKYGDLPNDVRQKIRAHSAAADNVAVFF
GEDIFIAVQSILLIKGFLDQYGIDVEPLHLSVWAIPTAIAALIIHFIRLWLLDRSL
3373 PF05952
(ComX)
 click to view
Estimated TM-score=0.57;
hard target.		 >Bacillus competence pheromone ComX (Length=55)
MLQNVVEYLIQNPDVKERVQEGTASLIGLTEMEQKAVHDVFESSGSTSEIPIEYW
3374 PF05892
(Tricho_coat)
 click to view
Estimated TM-score=0.57;
easy target.		 >Trichovirus coat protein (Length=193)
KRVEIRAIIEELVLAKAQPTDDASESGYDRNMYLNTLFGYIALVGTSKKAIHYGEVDIVGPKASKKTGIDPRGKMVVSEL
VGRMRTLSVAVSEGPVKGATLRQMCEPFAQNAYDFLVVMAEMGTYSQLATKMTRSGFKEPQVMFDFASGLDLKALTLQEA
TVIQAMHSRLFRTEGAKGVFNAQSSIGEQAVEI
3375 PF05837
(CENP-H)
 click to view
Estimated TM-score=0.57;
hard target.		 >Centromere protein H (CENP-H) (Length=118)
LLPHINSRDTSSVALAQTSNEIRTTLDKLTDVEAESLRVGRRNVELTAEVLRLAEEAERRKAGETDDPAVQAQMASLQAE
LKASRQRWKVMKGTASAVVAGSGVDWARDEELREMVLD
3376 PF05777
(Acp26Ab)
 click to view
Estimated TM-score=0.57;
very hard target.		 >Drosophila accessory gland-specific peptide 26Ab (Acp26Ab) (Length=90)
MNYFAVLCIFSCICLWQFSDAAPFISVQSSSQSRSQKVMNGMLRTLYDYSVQDSVNDATGHLIHTHKADFNSDVMSPEEI
ERVRQQLNMA
3377 PF05666
(Fels1)
 click to view
Estimated TM-score=0.57;
hard target.		 >Fels-1 Prophage Protein-like (Length=40)
HAQPRHPAVYSPAAGVLCDRYVCADDQGISRALTERYLGK
3378 PF05655
(AvrD)
 click to view
Estimated TM-score=0.57;
hard target.		 >Pseudomonas avirulence D protein (AvrD) (Length=329)
LFHRSVDDVLGPRERRFFGEGFKRAEHRLRHIFVTYGPEGRAQADARVSVDYPSDWSRKGDADQRPHLSTVDVLVIGVQL
SEVHLAHVLGLSPDQRARAVLQRVRIKAGRSPVEEDLAGFAASAQLVATVPSDRVVGLFLSTVECVVGTLRMRCEIRHEA
GVPHQAAGSYDSLRGLLGDPRLRLFGEGFTSRRQLVEDVVIDPQARQAAAAVRVIRDEDAPSPATGLEGAHHDRASAIDA
FVIGLQLGQVLLYTLDDVPRAQSNTLWMRETILELDPLRPPLPATAPVTTRLDRCKRLETGKGDIWRSADIVGEFLGVRL
RCSVAHRLP
3379 PF05648
(PEX11)
 click to view
Estimated TM-score=0.57;
very hard target.		 >Peroxisomal biogenesis factor 11 (PEX11) (Length=237)
MEAWVRFSAQSAAKERVFRAAQYACTLLGYTMQKNGASAELLARIKQLEAHMSLGRKLFRLGNSAEALEAAKRAIHLSDM
VLRFCITVAHLNRAMYFACDNILWAGKTGLVPHADQEKWSQRSFRYYLFALIMNLSRDAYEIRLLMEREASGKRPKGTEN
GHQAQVDNGLQHLALRLRIQLRLLGHVLRSNPPLLLDLVKNACDIFIPLDKLGLYKTSPGFVGLCGLTSSILSILTI
3380 PF05624
(LSR)
 click to view
Estimated TM-score=0.57;
hard target.		 >Lipolysis stimulated receptor (LSR) (Length=48)
DWLLVLLVVLGFLFLLMLIGICWCQCCPHTCCCYVSCPCCPERCCCPR
3381 PF05596
(Taeniidae_ag)
 click to view
Estimated TM-score=0.57;
hard target.		 >Taeniidae antigen (Length=64)
DDDEVTQTKKGVMKAISEIKHFFQSDPLGKKLVEVMKEVGSVCQMVRKKARMALKEYVRKLVKE
3382 PF05359
(DUF748)
 click to view
Estimated TM-score=0.57;
very hard target.		 >Domain of Unknown Function (DUF748) (Length=156)
RFSINNISLQGSSIDFEDRAVNGGKKHTIRELTFTIPFISTIPYLAEQYTDPRFSAIINGARFSFSGKTRPLHNSMETNL
NLKLAELDLPYYLAYLPAQMPIKLDSGKLGLDLALTYRIHQNKKPELMIKGLTRLDEISVKEKNNASLASFKRLDV
3383 PF05277
(DUF726)
 click to view
Estimated TM-score=0.57;
hard target.		 >Protein of unknown function (DUF726) (Length=336)
KKLKRYFMIGLAGLGGGAIIGLTGGLAAPFVAAGAGAIIGGAGAAALGSTAGIAVIGSLFGVAGAGLTGYKMKKRVGDIE
EFAFDTLTKGRELHLTIAVSGWITEEGSHAFQKPWMSLMNSREQYCVRYESSYLLELGRAMDYFLSFAVSMAAQEALKYT
ILSGIISAIAWPATFLTFASVIDNPWGVCIRRSAEVGKHLAEILISRQQGKRPVTLIGFSLGARVIFYCLQEMAQRKGCE
GIVEDVVLLGAPIPGYVEQWKCFERVVCGKIVNGYCTGDWLLKFLYRTSTATLKIAGLGPVAWNNRRMINVDLSNIVSGH
ADYPNKMPSVLEAVGV
3384 PF05263
(DUF722)
 click to view
Estimated TM-score=0.57;
hard target.		 >Protein of unknown function (DUF722) (Length=133)
MADKLDRIIGDYVNGRLEARIKSIESRYLYKQKVDNLGIRTAYSGGSEPESHVLNKEALENDEEYIKLKDLMYQFSLWYE
PLIKEEKEIIKLKHCGYGGFTWYRVMMELDNEGIEISEKKAKFIYYRFRKDIN
3385 PF05231
(MASE1)
 click to view
Estimated TM-score=0.57;
hard target.		 >MASE1 (Length=281)
LGLFVVAYILGCGFAQSLAIVPGTGISIWPPSGLFIATLVLASGYSWPWWVLGGCLAELFSNFLWFHSPLPAAVLIYIGN
ALEAAVGAWLVNRTCRRPVRLETLQEVLAFVVLAAGVAPTIGATVGSATLAWFGIQSQTFAAAWPLWWIGDATGILIVAP
LALVVFQNWRGKSQLSAARWMEACVLGLIFLGVAALSLSGYLPFAYIIMPPLLWAAARFEFRGAAVALTLLALITAVFTI
SGASQFAGDPESQKHKQIMLQLFLAISAFSALIVAAISRQH
3386 PF05105
(Phage_holin_4_1)
 click to view
Estimated TM-score=0.57;
hard target.		 >Bacteriophage holin family (Length=110)
ASYLFGGWSALLSVLLTFVVIDYVSGVIAAAVDGKLNSHKGWAGIAKKVSIFFIVAVAHLVDTALGDSHIFRDAAIFFYI
ANELLSIVENIGRMGVPIPEKLTNAVEVLK
3387 PF05020
(zf-NPL4)
 click to view
Estimated TM-score=0.57;
trivial target.		 >NPL4 family, putative zinc binding region (Length=144)
VKQSALDDGLDKLHGKIPRGRDKMCRHGPKGMCDYCQPMDPFDPGYMADKKIKYTSFHSHLRKVNAFTNKPELGSSYIPP
LVEPYYRVRRDCPTGHPPWPEGVCSKCQPSAITLNPQSFRMVDHVEFASPSIVDSFIDPWRKTG
3388 PF05003
(DUF668)
 click to view
Estimated TM-score=0.57;
hard target.		 >Protein of unknown function (DUF668) (Length=92)
TLAGSALALHYANVIIVIEKLAASPHLIGNDARDDLYNMLPASVRAALRARLKPYAKSLTSSVFDTELAEDWTEAMAAIL
EWLAPLAHNMIR
3389 PF04895
(Nre_C)
 click to view
Estimated TM-score=0.57;
very hard target.		 >Archaeal Nre, C-terminal (Length=110)
ENFKGRTDYAKIGGCYYSARLAVCEKLHEERRQATVIVLREIHPGYIMPIGVWQVRENVRNAMKQKPKKFKSFEQCLKYA
GSKLDIPISDWMVQSELLKRCRYQKKLSEF
3390 PF04837
(MbeB_N)
 click to view
Estimated TM-score=0.57;
easy target.		 >MbeB-like, N-term conserved region (Length=52)
MSNLLQMGTDFEKKLKERAVSTENMLNSEFRKLEASVDRELNLNGQKIRDAI
3391 PF04836
(IFRD_C)
 click to view
Estimated TM-score=0.57;
hard target.		 >Interferon-related protein conserved region (Length=47)
NELLREIFNLGNPLLDNASNVVKIKKLERHHMNMAAFKARSLTRGKN
3392 PF04784
(DUF547)
 click to view
Estimated TM-score=0.57;
very hard target.		 >Protein of unknown function, DUF547 (Length=128)
FMTYQQKLSFWINMYNACIMHGFLQYGVPSSPEKLLTLMNKATLNIGGNTINAQSIEHFILRNQTSSLRKEIYQKDDKEA
IARELYGLDSSDPNVTFALCCGTRSSPAVKIYTSDVLAELERTKLEYL
3393 PF04736
(Eclosion)
 click to view
Estimated TM-score=0.57;
hard target.		 >Eclosion hormone (Length=61)
IELMGGYDIIGICITNCAQCKKMYGAFFEGHLCAEACVQFKGKTIPDCEDLSSIAPFLNKM
3394 PF04711
(ApoA-II)
 click to view
Estimated TM-score=0.57;
trivial target.		 >Apolipoprotein A-II (ApoA-II) (Length=75)
QAEEPNLQSLVSQYFQTMTDYGKDLVEKAKGPELQAQAKAYFEKTQEQLTPLVKKAGTDLINFLSNFMDLRTQPA
3395 PF04688
(Holin_SPP1)
 click to view
Estimated TM-score=0.57;
hard target.		 >SPP1 phage holin (Length=72)
MDKGTIARTSVLLIALVNQVLTMFGWNPLPWSDEQVYTVVTGVLTVGATLVAWWKNNYVSKKGKAQRKVLKE
3396 PF04674
(Phi_1)
 click to view
Estimated TM-score=0.57;
very hard target.		 >Phosphate-induced protein 1 conserved region (Length=278)
QYHKGPLLTGKISVNLIWYGKFKPSQRAIITDFITSLSSPIKPTTASQPSVATWWKSTEKYYQLTNNKKSVNLALSLGSQ
ILDEKYSLGKSLTTNQILNLASKGQQQNAINVVLTAADVLVDGFCSSRCGTHGSSYGARVNGKRNKFAYIWVGNSETQCA
GQCAWPFHQPIYGPQSAPLVAPNNDVGLDGMVINVASLLAGTVTNPFGNGYFQGPKEAPLEAASACTGVYAKGAYPGYAG
DLLLDKTSGASYNANGDNGRKYLLPAIVDPKTSACSTL
3397 PF04659
(Arch_fla_DE)
 click to view
Estimated TM-score=0.57;
hard target.		 >Archaeal flagella protein (Length=93)
KARLEKLPEDVVSTMIALKWLGFLIDRVGIQNLERVLEFYYEIGWISEEVLNQLLRYAKGTRPHHRDPEWKPADKLTVQD
HLISLLFIERLRG
3398 PF04368
(DUF507)
 click to view
Estimated TM-score=0.57;
hard target.		 >Protein of unknown function (DUF507) (Length=182)
MRIKLPHVPYIAHKIAIDLLNCGFVKLNKGVEPIVAKASEILTADVQKERALEERVNELLEKNEDEMQTMQIDRKNMFWL
IKKKLANDFGVILTHEDRFSDVAHKILETTWKSSLIDYNVSENRVKNVIYGSIDEYLKIYEKIEDEVLEKIDNYKRKLIP
GTEEYDLVFERLYQDELRKRGM
3399 PF04361
(DUF494)
 click to view
Estimated TM-score=0.57;
very hard target.		 >Protein of unknown function (DUF494) (Length=157)
MFDVLMYLFETYIHSDAEVMIDQDELTDELSRAGFHQDEIYKALGWLERLANLHDSERETYVTCSAPSSMRIYAPQELDR
LSAECRGFLLFLEQAKVLNAETREIVIERLLELDTPEIELDDLKWVVMMVLFNVPGSENAYQQMEELVFDESDGVLH
3400 PF04342
(DMT_6)
 click to view
Estimated TM-score=0.57;
hard target.		 >Putative member of DMT superfamily (DUF486) (Length=104)
TILLLTISNIFMTFAWYGHLKYKDSPLWIVIVASWGIAFFEYCFQVPANRIGHYEFNAAQLKTIQEVITLVVFCVFSVLY
LKEPLKWNYLAGFGLMIGAVFLIF

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