Home Research COVID-19 Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●QUARK ●LOMETS ●COACH ●COFACTOR ●MetaGO ●MUSTER ●CEthreader ●SEGMER ●FG-MD ●ModRefiner ●REMO ●DEMO ●SPRING ●COTH ●BSpred ●ANGLOR ●BSP-SLIM ●SAXSTER ●ThreaDom ●ThreaDomEx ●EvoDesign ●GPCR-I-TASSER ●BindProf ●BindProfX ●SSIPe ●ResQ ●IonCom ●STRUM ●DAMpred

●TM-score ●TM-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13

[Back to server]

Modeling of Pfam protein domain faimilies by C-I-TASSER (Page 31)

Search by Pfam ID:

Go to page (83 pages in total): [First page] << < 26 27 28 29 30 31 32 33 34 35 36 > >> [Last page] [All entries in one page].

# Pfam ID C-I-TASSER models ranked
by estimated TM-score
(click to view)		 Full name and representative sequence
3001 PF17340
(DUF5370)
 click to view
Estimated TM-score=0.58;
hard target.		 >Family of unknown function (DUF5370) (Length=62)
MGAIERSGYRFEPEFSVINQNGAVHVYQNGEFIEEIKFTFSGKFPEHDQIEELVDKYCEQHQ
3002 PF17228
(SGP)
 click to view
Estimated TM-score=0.58;
hard target.		 >Sulphur globule protein (Length=94)
WWGSPWDNNGYGNGNGYGAGNGAGNGSGNFGMNFNMSGNAQTAANGYNGYNGYNGYNGYNGYNGYTAPMPPPWAYAAPVA
PVAPAAPQAPEAAK
3003 PF17151
(CHASE7)
 click to view
Estimated TM-score=0.58;
easy target.		 >Periplasmic sensor domain (Length=186)
TWREVVVLESAYRASQRNHLENVANVLDRQLQFSVDKLLFLRNGMYEALVTPLDFADLHDAVAQFAQLRGKSFWQLELDR
RRTLPLNGVSDAFVNRTTLLSRDNDALANELSAALELGYLLRLAHSSTMLAQRTMYVSRSGFYVSTEPTTNGGDIMSRYY
QYVIQPWFSGQSQRQNSARGVRWFSS
3004 PF17150
(CHASE6_C)
 click to view
Estimated TM-score=0.58;
hard target.		 >C-terminal domain of two-partite extracellular sensor domain (Length=86)
MDTSRRFEGIWTFDRTVSAKAAELLLDRIATYRPELADKIEQAKAEYISSGSTQPSDRNRQDSPNPDPFVQRLVTYLQAG
QYKLLK
3005 PF17113
(AmpE)
 click to view
Estimated TM-score=0.58;
hard target.		 >Regulatory signalling modulator protein AmpE (Length=284)
MTLFTLLLVLAWERLFKLGEHWQLDHRFEVIFRRGRQASLAKTLVITIVWMVIIWAVLRAVQGIFFGVPTLILWVILCLL
CIGAGIKRKHYRAYLKSARQGDADACKEMAEELALIHGLPTDCSEEARLRELQNALLWINYRYYLGPLFWFVVCGPYGPI
ALGGYAVLRGYQTWLARHMPPLKRSQSGVDALLHILDWIPVRLAGVAYALLGHGEKALPAWFASLGDIHSSQYHVLTRLA
QFSLARDPHTDPVQTPRAAVSLARKVTMIILVVVALLTIYGTLI
3006 PF17100
(NACHT_N)
 click to view
Estimated TM-score=0.58;
hard target.		 >N-terminal domain of NWD NACHT-NTPase (Length=222)
ERLWNQAYDELKASEPKLVEAYEKILSVGLHRNDPSSVTCESTENEIEGAHETRCRQMQQLVRDGLDRTQKAASIKRGID
EGLQAVQAVRGIVDKAIQAAPEAAIAWVGVCLGLEILSNPVTEARYNRNGIAYVLSRMEWYWNLVSLLLDENKAEQSSAG
LRVQLEKHVVQLYEKLLSYQVKSVCLYHRNWAAVVLRDVFQLDDWAGQLDDIQKAEAAVRTD
3007 PF16971
(RcpB)
 click to view
Estimated TM-score=0.58;
hard target.		 >Rough colony protein B, tight adherence - tad - subunit (Length=167)
MRKLVTSIVFVVLMYSAQGVAFSKNELVTNTNVAQPVQLDDFSRTQLVNRYVMSEYSDVVYHNVLYSVLRDVGSDRSKRV
HIIWSNKESQKKATGMRNFLINKGVEAASIKLVRSEYKKALYPIYVEVSRIGTKRANCRIDTAEDMMSWDGLNPCATKSN
QRIQLKY
3008 PF16910
(VPS13_mid_rpt)
 click to view
Estimated TM-score=0.58;
hard target.		 >Repeating coiled region of VPS13 (Length=233)
FEYKPLDNRADNAAALYMRNIDIIYNPEIIRELIVFFTPPETSADSINALIEVAGDTFEGIKKQTKASLEYALEQHTTFD
LKVDMDAPVIIIPENCTSTSCRAIVIDAGHINVESNLSSPEMRTQMKSKSGAEMSAEDNLQFRSLMYDRFTIQLTETKVL
VGDSLDTCLVQIRNPRPELSYLHLIDHIDMMFLLELCIIRKSVDMPRFKVSGHLPLLKVNFSDTKYKALMQLP
3009 PF16907
(Caskin-Pro-rich)
 click to view
Estimated TM-score=0.58;
very hard target.		 >Proline rich region of Caskin proteins (Length=85)
KKRSHSLHRYALSDGEHEEEDGTTSTLGSYATLTRRPGRGQMPRACLQADAKVTRSQSFAIRAKRKGPPPPPPKRLSSVS
STPTA
3010 PF16888
(DUF5082)
 click to view
Estimated TM-score=0.58;
easy target.		 >Domain of unknown function (DUF5082) (Length=121)
KYEINQANYRISECQNEIQGLEKKIERLEGAKQKLQTYKLNIESEKFDITQKLSCSSWKGSNKEEYEGIAEEQLKPCYQT
YYDETDQAVDAIMDEITRLENQIYDQEGVIGWLKSQINSLG
3011 PF16634
(APC_u13)
 click to view
Estimated TM-score=0.58;
very hard target.		 >Unstructured region on APC between APC_crr and SAMP (Length=54)
IESPPNELAAGEGVRAGAQSGEFEKRDTIPTEGRSTDEAQRGKVSSITIPELDD
3012 PF16142
(DUF4850)
 click to view
Estimated TM-score=0.58;
easy target.		 >Domain of unknown function (DUF4850) (Length=187)
HVQVPLYGITALNPVDDGLLKNFKYCNPKNCQFNFKLPAEQAKNLKLIAIPEIGVVLVPRTWQDIQADAGANGTGYALII
SPDQKQAIQLYDSSLCVGCGLPYASLYFPELLKESIENEFGGYQDSQKLMNVVHPSKHTAFFSYQIPKLNNKTHGVAKYH
DDGDFNFREIKVTLDKSQQHLVGPILN
3013 PF16086
(DUF4816)
 click to view
Estimated TM-score=0.58;
hard target.		 >Domain of unknown function (DUF4816) (Length=42)
VWKKKLVWKPEWKQIWKTESKLIWKQEWKKVQVPVWKEIQVP
3014 PF16084
(LydB)
 click to view
Estimated TM-score=0.58;
hard target.		 >LydA-holin antagonist (Length=147)
MIGWGVCVLALALADRYLLKRKDITHLELGDVEIKPGFIRVPFKYRSKFPFLRGATVRYWIRDVQKPTTVIEGEQRCLAS
AEQGENSEWLYIPTEYMGKGERLWHFNVMVTHGDSFINPLYRIFPVTQQIRSSYVINLAQDVSDDEK
3015 PF16083
(Phage_holin_3_3)
 click to view
Estimated TM-score=0.58;
easy target.		 >LydA holin phage, holin superfamily III (Length=77)
VIGFFAAWGGVVKYLMDRQKADRKWNWVSVINQIVISSFTGLLGGLLSLDSGASHYMTLIIAGLFGAMGSRVLENLW
3016 PF16080
(Phage_holin_2_3)
 click to view
Estimated TM-score=0.58;
easy target.		 >Bacteriophage holin family HP1 (Length=55)
DKYTSPTAYTWGAFTAMLGALSLNDWAIVIGIICTIGTFAVNWYYKHREFNRHEK
3017 PF15953
(PDU_like)
 click to view
Estimated TM-score=0.58;
easy target.		 >Putative propanediol utilisation (Length=153)
DNLVQQVMQRLEERKHTSVEVTFNHQVAPPSEQIFLRNGKVILKDISIELITDLYSMEKTNAWVKWVLEGISYDVKFYFL
INEQMVNFIPRMMILDWPILFVVNNESPVIASYNRIITREEIAAKPDKSILVRYQKQHITDEALDICNYKKIK
3018 PF15933
(RnlB_antitoxin)
 click to view
Estimated TM-score=0.58;
hard target.		 >Antitoxin to bacterial toxin RNase LS or RnlA (Length=94)
SYIVLSTSYMSPIEWVEELEACLMKEEYVGNILLDLLLSNGYDRDRFYEIFFDGKKLNFQTLLNVTKVSEELKQVSGEYY
SRNSEILDNSVLTK
3019 PF15866
(DUF4729)
 click to view
Estimated TM-score=0.58;
easy target.		 >Domain of unknown function (DUF4729) (Length=215)
CCPLAHNGVTPCPLLLNESLLEHFIKSHLDVPGLELCEIFERDRLLIIFNPFTFELGKNFCMSAIVYGGFRDSPYSLPLM
RFMPIYNVNLSDTHGKYACHLPLFLLICRTRLSAIDDDPPITTTMRTRHMGRQPVDEDVLALWVVSMELPQPIHVTISLF
NRRLDVTRSAIMKVRALKESQNCADFMRTSENYMRLTEQDMQILTNNNKESIYME
3020 PF15635
(Tox-GHH2)
 click to view
Estimated TM-score=0.58;
very hard target.		 >GHH signature containing HNH/Endo VII superfamily nuclease toxin 2 (Length=118)
QTAHHLIEASALHDKGRGGKGSVPLKGISNYSENKAPCVCAEGVNQNVGTHGLMHTFQSAAAAKSRSGILQLSNGSSISA
KKTTYGTAKRQSMAAMGKVFPQSKCSKECLSAQLDNYH
3021 PF15592
(Imm41)
 click to view
Estimated TM-score=0.58;
hard target.		 >Immunity protein 41 (Length=115)
QVLTSNYQLKEGSFLYSLLEEASFNEIAFWNYYNAVIEIIDQTKDKQLDRELTKIIHWTYKRVMRSFLCHFDPSDVFKIS
DFPDDRFIYFYERLDFMIDGYYEGFIMSEKQFGDN
3022 PF15541
(Ntox4)
 click to view
Estimated TM-score=0.58;
hard target.		 >Bacterial toxin 4 (Length=106)
LKGYERAHLWGHGFGDEAKLGLMYAPKALNQEVQNFGFEKFIRELQVLSQQEGRKVFCRCKAFSHPPKGKSLNAAKGELL
ISEVFYEVVYEAKDGRKIVGKFAASI
3023 PF15524
(Ntox17)
 click to view
Estimated TM-score=0.58;
very hard target.		 >Novel toxin 17 (Length=94)
WSITARIQYAKLPRQGRIRYIPPKNYSPSAPLPKGPNNGYLDKFGNEWTKGPSRTKGQEFEWDVQLSKTGREQLGWASRD
GKHLNISIDGKITH
3024 PF15460
(SAS4)
 click to view
Estimated TM-score=0.58;
hard target.		 >Something about silencing, SAS, complex subunit 4 (Length=95)
ALPDALYLPVHKRAERLERSIRNTEKGRAQHEKDQIVRLLEGLQGHDWLRIMGVSGVTESKKKSFEPARRHFIKGCQAII
DKFRQWAQEEKRRKA
3025 PF15404
(PH_4)
 click to view
Estimated TM-score=0.58;
easy target.		 >Pleckstrin homology domain (Length=188)
QKGILYQKPKKHAVFSKYYIVLIPGFLILFNCFHRSTTGFAKNVIDYNHYLTIPISECYLYSGTTTELDLLRRDHTFDII
NPGNHAIPRAYDDGWKSTENESSRCFTLWFGTKRAIAKYSKMQEHKAEHAEESVTDSDGEYVKNKNYESNPGTLRLVNRL
GVSGRSMVFMARSRQERDLWVVSIYNEL
3026 PF15241
(Cylicin_N)
 click to view
Estimated TM-score=0.58;
very hard target.		 >Cylicin N-terminus (Length=107)
EVNMRTYENSIPISESNRKSWNQEYFALTFPKPPQPGRKKRSRPSESQVTVPRHDKRKLQEGQKPAHIWIRHSLRKFFQR
PSIYLAVRRQAPYRHPYTPKTNLKKAE
3027 PF15120
(SPACA9)
 click to view
Estimated TM-score=0.58;
hard target.		 >Sperm acrosome-associated protein 9 (Length=158)
EAAEALRNIEQKYKLFLQQQFTFIGALQHTREAARDTIRPVASISQVQNYMDHHCHNSTDRRILTLFLSICNDLSNLCTM
LETRYPDNTTTKDILEKCKLLLSHNNDLSTIRAKYPHDVVNHLSCHEARNHFGGVVSLIPIVLDYLKEWVAHVEKLPR
3028 PF15043
(CNRIP1)
 click to view
Estimated TM-score=0.58;
hard target.		 >CB1 cannabinoid receptor-interacting protein 1 (Length=154)
VHATVSLKIQPNDGPVYFKVDGQRFDQNRTIKFLTGAKYTVEVVLKPGVVHATTMGIGGVNIPLEEKSRDPQVVCYTGIY
DTEGVPHTKSGQRQPLQVNIQFSDIGTFETVWQVKFYDYHKRNHCQWGNAFGSIEYECKPNETRSLMWINKEMF
3029 PF15001
(AP-5_subunit_s1)
 click to view
Estimated TM-score=0.58;
easy target.		 >AP-5 complex subunit sigma-1 (Length=198)
MVHSFLIHTLCPVGALSCTESRVLYSRVFGADLTQTGPAGDREQESEARRLLQKEQLAVVARQVRSVCALQREAAGRPGL
HETGAVLGEEEAALQEADSGVLRLAEGDPFPREHTVVWLGVQALGFVLVCEAHENLLLAEGTLRSLARHCLEHLRLLGTG
SEVLLKADRIEVLLHRLLPHGQLLFLNHRFKHSLDKEL
3030 PF14997
(CECR6_TMEM121)
 click to view
Estimated TM-score=0.58;
hard target.		 >CECR6/TMEM121 family (Length=193)
PFAFISWFVYACLYVPRVAIIFKWEIADELTDHDWFGPNALKTTLALSAPLFLLLLYGHHDAKPHTNRKNYVDRLALGVT
FDILDSLELLDILFVQESRVILTFELENAILSFACIVFFLPTVALFELRKSRSDGEVASVNFGVLYSLLFMLLVNVPFLV
IRMLLWNIYNQDVSVFLIKNVMLLIIGFKDIWE
3031 PF14846
(DUF4485)
 click to view
Estimated TM-score=0.58;
hard target.		 >Domain of unknown function (DUF4485) (Length=81)
NIEFVYYTAMLKKFAPNLSKEKDKEKVIPWIRKLYAAEYATEFFKVKRNRYLFNMILSILNDEMYGVFKSIPPIGPLKSP
E
3032 PF14828
(Amnionless)
 click to view
Estimated TM-score=0.58;
easy target.		 >Amnionless (Length=446)
YKQWIPDTNYENKTNWDKGKVPCGNDVVVFPAQGKVSVFVETTHAVQEMRLPVDGELILNSGAGFYVLSGKDPACGAGAT
VQFQDSESLQWFNPAMWQAAATQNDFQLGKFLFSVHEESVPCQQDDVVFKALSSFRVDTTSSQSTIPVTSVSVLGKSFNS
KSEFSEYLSTRTGQMQFHGSSAVTVGNPGCGDPSGCDCGNSVNHQLICSTVQCATVSCKQPLSPMGHCCEVCGAIVTIQY
TVGFNMQTYRERIHHLFLILPEYRSIQLGVSKVFKSQKLLGVIPFSTTPEIQVVIVDGEEGKLSEALAQNIMTDIRSHGS
ELGITESEFQASSGNSSDPSGGNAGMVAGIVIAVLVLIALVAVGVVLIQKGVVRLPPMPTIPMPSLSSFKGNTDVGDLGG
TIDRGFDNPIFDHPDMLSNNPGLYGTESQSISMRQTGVHFINPVYD
3033 PF14741
(GH114_assoc)
 click to view
Estimated TM-score=0.58;
hard target.		 >N-terminal glycosyl-hydrolase-114-associated domain (Length=134)
QAGDDVPVSFENMASYVRMLTLFGNAQTDFYFSPPSSVADGTAKSIVVGASALVPTEGSGGVWSVGVSSIDADGNSTLHT
VGDFAAAGSEDWTPVTLTMPVTADVADYVDDNNEMLLTVSCSEPGTTQALFIDF
3034 PF14625
(Lustrin_cystein)
 click to view
Estimated TM-score=0.58;
hard target.		 >Lustrin, cysteine-rich repeated domain (Length=41)
CAQGQAYRDTSGNFVQCGHSPKSCPQNYECYYDGNLWGCCP
3035 PF14477
(Mso1_C)
 click to view
Estimated TM-score=0.58;
hard target.		 >Membrane-polarising domain of Mso1 (Length=63)
RSQHQETQSAPARTYTRSSSRLQDMYNRSREQSVPGAGYSSQSYQPARTNSASGNGSSSRLRD
3036 PF14469
(AKAP28)
 click to view
Estimated TM-score=0.58;
hard target.		 >28 kDa A-kinase anchor (Length=122)
WMKCEQFTVEKGIQKIEEFIKQTWEYQGAWLYCIDFLREEDDKYSKIYRYQVRWSIPTRRKPIPRATACVYFTIEVSKIK
PGHFPVDVYYVFEGNRLVHKPGNSRFREKWLKDIIDSKIIMM
3037 PF14468
(DUF4427)
 click to view
Estimated TM-score=0.58;
hard target.		 >Protein of unknown function (DUF4427) (Length=132)
LSASKVKNYADSINDYVSELYSKKDFLNDSYAMEFGNAWVWIHDNQSQVVRALLQAGMIKVNKEGRYLLDVNLASVDWPL
RRKEAFASHVAGWLKHRFDIEAGRYSVRGKDDYDAIPSYETPLKDQHPFYNH
3038 PF14461
(Prok-E2_B)
 click to view
Estimated TM-score=0.58;
easy target.		 >Prokaryotic E2 family B (Length=141)
CGFRYTPAKQMPKGILLDTKSRRKGYYVKEYSTKGGVFVIALVLWNDPHIQLPFAYILQQPEQYKGRLLPHINFGFCLCY
VTQMEADWNSNDLKSTYQDVDEQIQLTLDNSVASVESGTSNDVELEGEFSAYWQSEEELYL
3039 PF14298
(DUF4374)
 click to view
Estimated TM-score=0.58;
easy target.		 >Domain of unknown function (DUF4374) (Length=436)
TSCSEDDQSGSNNNSNTSTGNYVIAATVTSSSTDTYVLLTAPSLDEGEVTTQGNGLVNEGATYWVFYTNRYLYALNYNQG
EAGTTQSFILNNTGALEKRSQEYYVNRFTTYGYYDRYIMTTSTGDGPTELKDENGYVPQSFLASYLDVENQTYTSNTVNA
STPFLSENFLGNGEYVTLAGLAQVGTRLYAAAVPMGLSQYGCMQKNDDGSYKWVLPGNEDLIKTESGGSGSGAYDKDELQ
WTQYPNECWMAIFTDQTLTDWKLIKTDKISYACGRNRSQYYQMNWLADDGYMYVFSPSYAKTMKDVRQQTTLPAGVVRID
TKAEDFDPDYYYNLEAKADGASFLRSWYIGGDYFLLLMYDKAITASDKVANRLAIFNVSNGDLSYVSGLPTDVSGFGNTP
YMENGSAYIAVTTTSGYPAIYRIEPSTATASKGLVV
3040 PF14207
(DpnD-PcfM)
 click to view
Estimated TM-score=0.58;
easy target.		 >DpnD/PcfM-like protein (Length=46)
YDVTITETLKMTVTVEAESQLEAEQMVSDSWRNQEYILDADNFTGV
3041 PF14128
(DUF4295)
 click to view
Estimated TM-score=0.58;
hard target.		 >Domain of unknown function (DUF4295) (Length=48)
AKKTVATLQTGKEGRSYTKVIKMVKSPKTGAYIFDEQMVPNDKVQDFF
3042 PF14101
(DUF4275)
 click to view
Estimated TM-score=0.58;
hard target.		 >Domain of unknown function (DUF4275) (Length=139)
MSINEILKNKSIKVIEVPKWGTFLRKQWENVFANHLSHNEKKEIFMYDDDGFCGYLWHVFSFEKRVCLKEQEAETAFNNE
RKNSCYIFYQHTDDVFIVEEAANLNANDLLNEFDVYVVDKEFNWTYVKTHETGWCGPYF
3043 PF14093
(DUF4271)
 click to view
Estimated TM-score=0.58;
hard target.		 >Domain of unknown function (DUF4271) (Length=204)
ITSILLGCFILATLVFSKSRRFIEKQAKNFFYIPRSENSTMTETSGEVRFQIFLVLQTCLLASIVFFCYTRTFVGDTFTI
DQYQIIGIYTGIFAAYFLVKTIAYAFVDWVFFDKKKNRQWIQSFLLLISTEGVALFPLVMLLAYFNLSMESAVIYSIIVV
ILSKLLSFYKSYIIFFRRSGDFLQIILYFCALEIIPLFSLWGLL
3044 PF14069
(SpoVIF)
 click to view
Estimated TM-score=0.58;
hard target.		 >Stage VI sporulation protein F (Length=71)
FDNIEKKTNVKQEDIFKLAQSVSNANLKDEKTVRQLIAQVARLANKPVSKEKEDQIVNAIINNNMPMDLGS
3045 PF14041
(Lipoprotein_21)
 click to view
Estimated TM-score=0.58;
hard target.		 >LppP/LprE lipoprotein (Length=84)
DPCATLSWALAALDGGTGSSPWTVLFFHDDTYLGTATALPYSFTDVASQTDDTVTVSYGWLREGESTSQQSGGPGLVRYT
WNGS
3046 PF14038
(YqzE)
 click to view
Estimated TM-score=0.58;
hard target.		 >YqzE-like protein (Length=54)
KTNDYVKYMTQQFVQYMDQPKEERKTKKIQKKEERAPFANRWFGVIPLSFMLWY
3047 PF14034
(Spore_YtrH)
 click to view
Estimated TM-score=0.58;
hard target.		 >Sporulation protein YtrH (Length=99)
NFISCYFIALGVLLGGALIGGIGAYLSGQPPLTIITSLANRLKIWALVAAIGGTFDAVYSFERGIFEGNTRDIVKQLLLI
LSAMGGAQTGYLIINWLTQ
3048 PF14019
(DUF4235)
 click to view
Estimated TM-score=0.58;
hard target.		 >Protein of unknown function (DUF4235) (Length=77)
YKPVGVLLGLAAGMLAGNIFRQVWKLTAGDGEAPNPTDEDRRWGEILAAAALQGAIFSVVRAAVDRGGAVGVRRLTG
3049 PF13889
(Chromosome_seg)
 click to view
Estimated TM-score=0.58;
hard target.		 >Chromosome segregation during meiosis (Length=53)
VLRYLIHLNICCPAKGRFYLYSTIRVVFANRVPDGKEKLRNEIQYPEPRYSPY
3050 PF13885
(Keratin_B2_2)
 click to view
Estimated TM-score=0.58;
hard target.		 >Keratin, high sulfur B2 protein (Length=45)
CCGSVCSEQSCGLETCCRPTCCQTTCCRTTCCRPSCCISSCCRPS
3051 PF13800
(Sigma_reg_N)
 click to view
Estimated TM-score=0.58;
hard target.		 >Sigma factor regulator N-terminal (Length=86)
ALKKAKRKQLLKIVITSIIVVLILLPILYKTGNYFAAKSSTKLHEQLFLHNEIAEPNIQIDSQVTSNTSMFGGNIVTNRS
KNINGY
3052 PF13782
(SpoVAB)
 click to view
Estimated TM-score=0.58;
hard target.		 >Stage V sporulation protein AB (Length=109)
LLAVGLIPRFAGKTHTGDHIFLYEEMVVAGSIIGNLWSVFQLSINLGQWFLILFGFFAGIFVGCLALAIAEMLDTIPIFA
RRIGFRHGLGIVVLSVAFGKMLGSLIYFF
3053 PF13708
(DUF4942)
 click to view
Estimated TM-score=0.58;
hard target.		 >Domain of unknown function (DUF4942) (Length=193)
NTVDKGAWEYLMKESGLRSFMDSKARQDWDNQIKEGYLKVPEFNFDNIKATFTTLHEARGEMFERGVIECFKNLSWDYKT
NQPCKFGKRIIMYYLFNEKSRNGFCSQYPKYENANKVDDILRAFHIFDGKPELDHRNSFQQMVTKAREFDTDVTEIENEY
VIIKWFNNGNGHINFKRLDLVDKMNAIIAKYYP
3054 PF13274
(DUF4065)
 click to view
Estimated TM-score=0.58;
very hard target.		 >Protein of unknown function (DUF4065) (Length=111)
LKLLWLADRLHARMYGRTITGDCYKAMHNGPVASATRDILEYGITKSIKTEATTYLKSIEEDRYLFGSVGEVNYKVFSKT
DIDCLDMVMETFGDQEEFQLSKLSHSFPEWK
3055 PF13013
(F-box-like_2)
 click to view
Estimated TM-score=0.58;
hard target.		 >F-box-like domain (Length=102)
ASPKSNLYYRYSSESPKYAKILDCPDEILQLIFSYCYDASYIEKLPFAFSYRKQRHTLIHDLPNTCLRFKKILSPRNVSF
WKRLLKVHKKNPNSAVTCSESI
3056 PF12789
(PTR)
 click to view
Estimated TM-score=0.58;
hard target.		 >Phage tail repeat like (Length=60)
EYSKKTHIHYINQIPSLKETLETKADKTHTHSISDITNLQETLNRKSAVGHTHTIANITN
3057 PF12725
(DUF3810)
 click to view
Estimated TM-score=0.58;
hard target.		 >Protein of unknown function (DUF3810) (Length=323)
YANTIYPVLSRGVNRVTSLVPFSVMEALIVLLCAGAVFYMIFFIAKIIHNRGKRRKIFSLFAINLICIASVLYFVFVVSC
GINYYRYPFAQTCGLEIRPSSKAELTALCTDLADRANELRKGVQTDRNSVMRLNTEDIETTAKKARTAFDAVSGDYPLLR
AGYGPPKPVFFSRLMSYCDTTGIFFPFTFEANVNVDIPDYSIPLTMCHELSHLRGYMREDEANFIGYLACEKSGDADFRY
SGTMLAYIYASNALYGTDPSAANQIYGTLSDGVRRDLENNSAYWKQFEGPVATAAEHVNDSYLKANKQTDGIKSYGRMVD
LLL
3058 PF12716
(Apq12)
 click to view
Estimated TM-score=0.58;
hard target.		 >Nuclear pore assembly and biogenesis (Length=54)
QPDVASILALLAILFISLKILDMMYRAVMFWVTMALRLVFWGAILALGFWIWNR
3059 PF12709
(Fungal_TACC)
 click to view
Estimated TM-score=0.58;
easy target.		 >Fungal Transforming acidic coiled-coil (TACC) proteins (Length=77)
DTNKRLKLLAEDLYVQYSSKHEQKVKLLKKGYDTKYQSKIDQISLQNQGLVQEIEQIKNQLSTERKEKQKLLELLDQ
3060 PF12676
(DUF3796)
 click to view
Estimated TM-score=0.58;
hard target.		 >Protein of unknown function (DUF3796) (Length=126)
PKLGLLGLFGLFGFLGFVPQFFGESGVLDVPFPLIFFCFFGFFGFYYEGKMSGTMIDERYEANVNRAAAIANRVSLTLII
MAAILALSLFRIHDSYGMLKLLLAVIGFAFGLSLFLQEYLLYRFEN
3061 PF12657
(TFIIIC_delta)
 click to view
Estimated TM-score=0.58;
easy target.		 >Transcription factor IIIC subunit delta N-term (Length=174)
WPSALDCLAWSADCELAVAAGEVVELLIPNSKAQLQSADGALDGTTNPSWENIRIRTNIFSEAELPLHEPAPSRTYSTGE
EISSGLVAGLAWSPPGLAKHRRCALAVQTQNLVLSIWESSVNPRQPGSWKRSLIVNRELERYFAKHLTSEEELHGRDAAE
VLRLRRRIRTFSWC
3062 PF12652
(CotJB)
 click to view
Estimated TM-score=0.58;
hard target.		 >CotJB protein (Length=77)
ELLNHINQVSFAVDEVKLYLDTHPCDQEALVYFHEYSRKRNEALNEYARAYGPLTIDTASESCTERWNWINEPWPWQ
3063 PF12635
(DUF3780)
 click to view
Estimated TM-score=0.58;
very hard target.		 >Protein of unknown function (DUF3780) (Length=182)
HQTLGFGVPATSNPHHFIVEIPRTNTGSVGIVENLGMQTHDQSQSLIVRVLLERPRWTAIRGEVQRAFNARLKERNLKTS
TWKVGANPVDRLLGKELCVLAWAVEGMEFDHIPIAVRNWLALRPEERWWLFGMTALSTGGINDGNKGWRLALRHALGDVA
QHELFQHRPPQSKVKSTEKDTL
3064 PF12618
(DUF3776)
 click to view
Estimated TM-score=0.58;
very hard target.		 >Protein of unknown function (DUF3776) (Length=84)
AKKEEDEKTLKTEKRVKQPDKEGKFIVISEKGKISEKNISKNGKEDKENISENDMEYSVDTQIEKKPENDKVKSPQENVK
ETKR
3065 PF12550
(GCR1_C)
 click to view
Estimated TM-score=0.58;
hard target.		 >Transcriptional activator of glycolytic enzymes (Length=81)
YKLSRNLSNVTSLWREWSVGLGDGNPSVATLNEEYGSKWRQEAKERKYYSKRLVIINEIQKVANNNGLSLEDAAQSVENE
R
3066 PF12402
(nlz1)
 click to view
Estimated TM-score=0.58;
hard target.		 >NocA-like zinc-finger protein 1 (Length=57)
ASMTYPGTLAGAYAGYPPQFLPHGVALDPTKSSSLVGAQLASSLGCSKPAGSSPLAG
3067 PF12400
(STIMATE)
 click to view
Estimated TM-score=0.58;
hard target.		 >STIMATE family (Length=126)
CAFYFVNFTLDTTFGVLLNYAFLQLLVIIADKCNIQSLQVPGDYGNPIQIKIWLLQLTTWIVIIFTTKLVIGTVIFCFER
QLGDIAKWIFTPLASHPHIELIIVMVACPCLMNGLQFWIQDNFLKK
3068 PF12394
(DUF3657)
 click to view
Estimated TM-score=0.58;
very hard target.		 >Protein FAM135 (Length=66)
LKFELIYIPTLGNAWTDVQDSSDDTDLIPVHEFRIPHRALLGLHSYCPVHFDALHSALVDLTIHIV
3069 PF12322
(T4_baseplate)
 click to view
Estimated TM-score=0.58;
hard target.		 >T4 bacteriophage base plate protein (Length=203)
YKFDVRVGSKIINCRAFTLKEYLELITAKNNGSVEEIVKKLIKDCTNAKDLNRQESELLLIHLWAHSLGEVNHENSWKCT
CGTEIPTHINLLHTQIDAPEDLWYTLGDIKIKFRYPKIFDDKNIAHMIVSCIETIHANGESIPVEDLNEKELEDLYSIIT
ESDIVAIKDMLLKPTVYLAVPIKCPECGKTHAHVIRGLKEFFE
3070 PF12315
(DA1-like)
 click to view
Estimated TM-score=0.58;
hard target.		 >Protein DA1 (Length=212)
GLNMQVKQQIPLLLVERQALNEAMEGEKNGHHHMPETRGLCLSEEQTVSTILRRPRIGAGNRIIEMITEPYRLTRRCEVT
AILVLYGLPRLLTGSILAHEMMHAWLRLNGYRTLSQDVEEGICQVLAHMWLDSEIMSGIGSNVASTSSSSASSSSTSSKK
GTRSQFERKLGEYFKHQIESDTSPAYGDGFRAGNEAVLKYGLRRTLDHIRMT
3071 PF12309
(KBP_C)
 click to view
Estimated TM-score=0.58;
hard target.		 >KIF-1 binding protein C terminal (Length=356)
EWAINAATLSQFYINKLCFMEARHCLSAANVIFGQIGKIPATEETPEAEGDVPELYHQRKGEIARCWIKYCLTLMQNAEL
SMQDNIGELDFDKQSELRALRKKELEEEERIRKKAVQFGAGELCDAISAVEEKVQYLRPLDFEEARELFLLGQHYVSEAK
EFFQIDGYVTDHIEVVQDHSSLFKVLTFFETDMERRCKMHKRRIAMLEPLTVDLNPQYYLLVNRQIQFEIAHAYYDMMDL
KVAIADKLRDPDSHIVKKINNLNKSALKYYQLFLDSLRDPNKVFPEHIGEDVLRPAMLAKFRVARLYGKIITADPKKELK
NLAASLEHYKFIVDYCEKHPEAAQEIEVELELSKEM
3072 PF12290
(DUF3802)
 click to view
Estimated TM-score=0.58;
hard target.		 >Protein of unknown function (DUF3802) (Length=111)
MVTDKDGYMHLIQYLTEHLGLFESSQNNAAATETVMELFEEQLSAQIIMVCGQNPQLSFAQRNMVIREIDAIVYDLEEIL
ASVSNQQATPEQSIFITEFSGLIKNLFDQEV
3073 PF12247
(MKT1_N)
 click to view
Estimated TM-score=0.58;
hard target.		 >Temperature dependent protein affecting M2 dsRNA replication (Length=89)
PNDIHEFIGTRLPEEIYFYLSRGIVGPHVINILTSGMLIENTPLDNRDSQEYRDFLKDIFPIQTQSLNLLTQPLHRFYQA
KNVSAYYWF
3074 PF12159
(DUF3593)
 click to view
Estimated TM-score=0.58;
hard target.		 >Protein of unknown function (DUF3593) (Length=86)
SQLFAFSLFPYIGFLYFITKSKSSPKLTLFGFYFLLAFVGATIPAGIYAKVKYGTSLSNVDWLHGGAESLLTLTNLFIVV
GLRQAL
3075 PF11966
(SSURE)
 click to view
Estimated TM-score=0.58;
hard target.		 >Fibronectin-binding repeat (Length=81)
DNGTAKNPALPPLEGLTKGKYFYEVDLNGNTVGKQGQALIDQLRANGTQTYKATVKVYGNKDGKADLTNLVATKNVDINI
N
3076 PF11961
(DUF3475)
 click to view
Estimated TM-score=0.58;
hard target.		 >Domain of unknown function (DUF3475) (Length=57)
ILAFEVANTIVKGANLMQSLSKESVSYLKEMVLPSEGVRRLISDDISELLRIAAADK
3077 PF11956
(KCNQC3-Ank-G_bd)
 click to view
Estimated TM-score=0.58;
very hard target.		 >Ankyrin-G binding motif of KCNQ2-3 (Length=93)
RHETALRDSDTSISIPSVDHEELERSFSGFSISQSKENLDGLHSCYAAAAPCATVRPYIAEGESDTDSDLCTPCGPPPRS
ATGEGPFGDVGWA
3078 PF11444
(DUF2895)
 click to view
Estimated TM-score=0.58;
easy target.		 >Protein of unknown function (DUF2895) (Length=201)
NEITHLQAHVKTLRLAAGALFVVTLLLTFGWWSAPKNLTIHVPPDLRSGSTRRWWDVPPESVYTFAFYIFQQLNRWPTDG
DADYPRNLHALSAYLTPACRAYLQQDYEYRRSNGELRHRVRGIYEIPGRGYGDDPATRVKVVSNNDWIVTLDVTADEYYG
GDQVKRAFVRYPLKVVRMDVDPEHNPFGLALDCYARTPERI
3079 PF11385
(DUF3189)
 click to view
Estimated TM-score=0.58;
hard target.		 >Protein of unknown function (DUF3189) (Length=145)
VIYHCFGGSHSSVTAAAIHLGLLSRHRLPTAAELLALPYFDGRSRGEEGDLKYMGTDAYGNKVYAVGKKNLGARFETFLY
NLAAVIGIPRRNILLLNTSPLVNMSMRIGGFISRRMGLTFLGRPLVVWGTRRAFPRLGLFVAENR
3080 PF11381
(DUF3185)
 click to view
Estimated TM-score=0.58;
easy target.		 >Protein of unknown function (DUF3185) (Length=58)
KLVGIVLLVVGIILLYFGYQAYDSAASEVSQAVTGETTDEAMWYLIGGAVAVVIGLYG
3081 PF11363
(DUF3164)
 click to view
Estimated TM-score=0.58;
very hard target.		 >Protein of unknown function (DUF3164) (Length=193)
YWKDADGNLKPEALVKEIDKERDELVRQFVSKAQALSKALGDFKQSVFDDVGAFVSLSAEKYGVKIGGAKGNITLFTYDG
EYKLQLAVQENIRFDERIHAAKALIDECLHDWSEGAKPELKALIDNAFEVDKEGNLSTAKILSLRRVEIDDARWNQAMTA
ISDSVQVIGSKGYIRFYKRDENGKYQPISLDMA
3082 PF11345
(DUF3147)
 click to view
Estimated TM-score=0.58;
hard target.		 >Protein of unknown function (DUF3147) (Length=110)
AILHFVIGGIAVALASIIADKVGGKLGGIIATMPAVFLAAIIALALDHRGTQLVEMSMNLSTGAIVGILSCILTVFLTSL
YIKHKGYRKGTIFTVVCWFVISLAIFSIRH
3083 PF11328
(DUF3130)
 click to view
Estimated TM-score=0.58;
easy target.		 >Protein of unknown function (DUF3130 (Length=82)
MREIKVNEVTFQQHATKLASKSSGRYLPLKNGNMAYSRANSIDQLRSALIELVDVVEDFQHVTKQDAGRLKKMGIAYAKQ
DX
3084 PF11326
(DUF3128)
 click to view
Estimated TM-score=0.58;
easy target.		 >Protein of unknown function (DUF3128) (Length=73)
RLSCSPCFDALWFCYSPVHQMQQYYRLGVLDNCSEKWSALVDCLTLKTKRSSQIQEILDTRERAKPPHIWTFR
3085 PF11314
(DUF3117)
 click to view
Estimated TM-score=0.58;
hard target.		 >Protein of unknown function (DUF3117) (Length=50)
LRPRTGDGPLEVTTEGQSIVMRIPLEGGGRLVVELTPDEAGALGDALTKV
3086 PF11310
(DUF3113)
 click to view
Estimated TM-score=0.58;
hard target.		 >Protein of unknown function (DUF3113) (Length=60)
MQQQAYINATIDIRIPTEVEYHHFDDVDDEKDMLAKRLDDNPDELLKYDNITIRHAYIEV
3087 PF11306
(DUF3108)
 click to view
Estimated TM-score=0.58;
easy target.		 >Protein of unknown function (DUF3108) (Length=234)
TCFLSQAQKKDAAFETGEWFKFRIHYGFINASYATLEVKDDYLNGKSVYHVVGKGKTTGFASIFFKVDDNYESYFDKNSG
KPYKFIRQIDEGGHTKDIEIDFNHEKEKALVNNKKHKTKEEINIEKNVQDMVSAFYYLRNNYDVSSIKEGDEVVLNMFFD
KENFKFKLKFLGRETMRTKFGKVPCLKFRPYVQAGRVFKESESLTLWVSDDENKIPIRIKAKLVVGSLKADLDA
3088 PF11256
(DUF3055)
 click to view
Estimated TM-score=0.58;
hard target.		 >Protein of unknown function (DUF3055) (Length=80)
LYDDTENTKTRFVSFLGENHRFDFAIVQTNRHYGKHLVLDMQGNRFAIIGHDDLEEEGYLEHAFQLNEHDAEELRSFLSE
3089 PF11237
(DUF3038)
 click to view
Estimated TM-score=0.58;
hard target.		 >Protein of unknown function (DUF3038) (Length=168)
PRTRQQIDLILLAIEALELGGSEAMLFAAKELELQDIIKNRVVLWRLRCSNPLRRSYSRNPLALEEAKALVVIASHMARR
MTVLIRQMLLAYQQLNEKQVPLENHFRLSEYLERFRAHFRSRMNPRRAKVAIYSSDDKLNELALSLLSQLLFCTGTSGVQ
RFWISLFD
3090 PF11210
(DUF2996)
 click to view
Estimated TM-score=0.58;
hard target.		 >Protein of unknown function (DUF2996) (Length=121)
AVEDKPFAEFIQQDYLPALQTALTKQGVEDLDVSFAKQKIPVAGMSSAGDCWQVVGKFQSGQRQFNLYFPQENIQSQRAF
SCAENNTKTSTLEPFLIDERKITLDLMVFGVVQRLNAQKWL
3091 PF11201
(DUF2982)
 click to view
Estimated TM-score=0.58;
very hard target.		 >Protein of unknown function (DUF2982) (Length=150)
FTLTASHFQQHLFKGGWVVRWRNIESIGICSYQQDGWHQPLPWIGIRLKDYSPYLDAICPRIATEILLSQRALLYLGARQ
NHCEEKFEDMMLDPQPYTSKAGKQYDGLQAMLANRMKYQRKFYGYDVFISASDLDREADEFVGLTRRYLA
3092 PF11153
(DUF2931)
 click to view
Estimated TM-score=0.58;
very hard target.		 >Protein of unknown function (DUF2931) (Length=206)
LLACTLALLSGCAASQAQPKLPFDAWYAGTFAPDHMEVWVESVDVIDRRGLAYERVNGGVPSYSSTIAGWPSHPAGGAGK
GLHGIDLPEIIFVRWQSLVEPQTYNVRINIPEWIREEMLKPQAPYCRGEKRVVEGMYRRVITIGLAPGGIAKAWVGGPCL
QSIEIGRFEAAVSKAGSSLGQNEGRYAYPLSEKAKAYIEQHGVPYG
3093 PF11101
(DUF2884)
 click to view
Estimated TM-score=0.58;
hard target.		 >Protein of unknown function (DUF2884) (Length=228)
CEVSLNYDVTVEPKKLTVSDVGKEQYRIEMNKLFVNGEQISLNKQQQQLVSQYADEVSSQVPEVIELVNDAVAMASTAVS
MALTPLLGDATGAKIDEMMDGLQDRVEDVAYQNGDKFYLGATESSLESAFGEEFEKEMEQLVQNSIGTMMMSLGSQMMSG
DGDSFEAKMDAFSVKMDSIGEDIELQMEEQAQDLEARGERLCENFETLAALEKKLQAQIPELANYSLV
3094 PF11087
(PRD1_DD)
 click to view
Estimated TM-score=0.58;
hard target.		 >PRD1 phage membrane DNA delivery (Length=54)
MGEFGKTLITIVTAIIGVAIIAVIVSQRSNTAGVIQSATSGFSNILKSALAPII
3095 PF10967
(DUF2769)
 click to view
Estimated TM-score=0.58;
hard target.		 >Protein of unknown function (DUF2769) (Length=57)
CICPKCPTYTNCAKEAKELLFCMKGKSFMCITNEKGCICPDCPVTKEYGLKNKFFCM
3096 PF10925
(DUF2680)
 click to view
Estimated TM-score=0.58;
easy target.		 >Protein of unknown function (DUF2680) (Length=56)
LTPQQKQMISDYNEKIADLEKEFVNKLVDAGLITRQQADNIIKNIDERVSKANENN
3097 PF10895
(DUF2715)
 click to view
Estimated TM-score=0.58;
easy target.		 >Domain of unknown function (DUF2715) (Length=168)
FAAEVFVSPKVGQVGAHPWGKEPASRTEVLPYTPTLGLAVGVIAHNGFAFTTELDAGLSSLMFRAQFLVGWAIRSGKNFA
FIPSLGVDVLSTRDDKLVGIPINLDFLIFFTKHVGLDFTFGSGVNVPLTKNLKKGANGNGQDLTWSSIWTGYCCTSLVMV
KIGPVFRI
3098 PF10835
(DUF2573)
 click to view
Estimated TM-score=0.58;
hard target.		 >Protein of unknown function (DUF2573) (Length=77)
QKLQEQLDGLLEKYTELLLGETNDELKEEVKQWILYTHIAKSMPPLAKHWNATYPDAKQGIKEIIQHIKELNEAHRN
3099 PF10834
(DUF2560)
 click to view
Estimated TM-score=0.58;
hard target.		 >Protein of unknown function (DUF2560) (Length=72)
IPMTEEHKFQLEIYKLVMNQNAAAEEAFQFIGTDELKLELFKIHFQSGGANSDITTRTIEAVRKSKEALDLF
3100 PF10656
(DUF2483)
 click to view
Estimated TM-score=0.58;
very hard target.		 >Hypothetical protein of unknown function (DUF2483) (Length=72)
MKQTVTYLIKHKDENLFITNRPTEVNDTVKYSTDMRDAREFDGLDKTVIDMSKHKAIKKTVTETIEYEKVEH

Search by Pfam ID:
Go to page (83 pages in total): [First page] << < 26 27 28 29 30 31 32 33 34 35 36 > >> [Last page] [All entries in one page].

Bulk download:

[Back to server]

[an error occurred while processing this directive]

yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218