Home Research COVID-19 Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●QUARK ●LOMETS ●COACH ●COFACTOR ●MetaGO ●MUSTER ●CEthreader ●SEGMER ●FG-MD ●ModRefiner ●REMO ●DEMO ●SPRING ●COTH ●BSpred ●ANGLOR ●BSP-SLIM ●SAXSTER ●ThreaDom ●ThreaDomEx ●EvoDesign ●GPCR-I-TASSER ●BindProf ●BindProfX ●SSIPe ●ResQ ●IonCom ●STRUM ●DAMpred

●TM-score ●TM-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13

[Back to server]

Modeling of Pfam protein domain faimilies by C-I-TASSER (Page 35)

Search by Pfam ID:

Go to page (83 pages in total): [First page] << < 30 31 32 33 34 35 36 37 38 39 40 > >> [Last page] [All entries in one page].

# Pfam ID C-I-TASSER models ranked
by estimated TM-score
(click to view)		 Full name and representative sequence
3401 PF04172
(LrgB)
 click to view
Estimated TM-score=0.57;
hard target.		 >LrgB-like family (Length=213)
TLCVFWLAQQLYRRLGEFPLLNPVLVSVVALVVILAATGTPYEDYFDGAQFIHFLLGPATVALAVPLAGQARELRRYWRP
IAIALSAGSLTAVASAMALGWLLGLDSQTLLSMLPKSVTTPIAMGVTEQIGGLPSLTAVLVILTGITGAVIGIPLLRLLG
VRDPVAKGFAMGVAAHGIGTARAFEHSERAGAYSGLGMGLNGALTALLVPLLV
3402 PF03988
(DUF347)
 click to view
Estimated TM-score=0.57;
hard target.		 >Repeat of Unknown Function (DUF347) (Length=52)
AFWIMKICATTLGETAGDLLSMTLDVGYAISSLILISLFVATLVTQLAAKRY
3403 PF03940
(MSSP)
 click to view
Estimated TM-score=0.57;
very hard target.		 >Male specific sperm protein (Length=51)
CCGPCCGPCCGPCCGPCCGPCGPCCGPCGPRCGPCGPCGPCCGTMEKRNGL
3404 PF03533
(SPO11_like)
 click to view
Estimated TM-score=0.57;
hard target.		 >SPO11 homologue (Length=43)
AFAPMGPEASFFEVLDRHRASLLAALRRGGGEPAGGGTRLASS
3405 PF03206
(NifW)
 click to view
Estimated TM-score=0.57;
hard target.		 >Nitrogen fixation protein NifW (Length=99)
TLEEFKKLVDAEEFLQFFNLPYDQQFVNVNRLHILKKFSQYIREVDDNSPDLSPEERLNQYSLALQKAYQVFIESTPHEQ
KLFKVFNDKPKNVVTLTEL
3406 PF03000
(NPH3)
 click to view
Estimated TM-score=0.57;
hard target.		 >NPH3 family (Length=266)
DWWYDDVSCLSLPLYKKVISAMEYRGINQDIIVGSLNHYAKRRLPGLNRRKSISDVSSCLSMSSLTSISSEEEQKYLLEE
IDRLLPFQRGVTSCKLLFGLLRTAIILKASPSCVSNLERRIGMQLDKATVEDLLIPNISESVETLYDVDCIHRILDHFLA
MEQETGGASPGLGEDAQMLASPSLMPITMVAKLIDGYQAEVAPDVNLKLPKFRSLAAAIPNYARPIDDGLYRAIDIYLKA
HPYLSESEKEELCRVMDCQKLSLEAC
3407 PF02656
(DUF202)
 click to view
Estimated TM-score=0.57;
easy target.		 >Domain of unknown function (DUF202) (Length=66)
RFSLANERTFLAWIRTSLALIAGGVALEALGLGLQPGFRLAASIVLIVTGIAAPAQAWIGWMRTER
3408 PF02308
(MgtC)
 click to view
Estimated TM-score=0.57;
hard target.		 >MgtC family (Length=128)
LTVAVLLGAIIGHERRRSERGVGIQTMAITCLASALYTWGGMFCEGTGPSKWDTSRVAAAVVSGVSFIGGAVIVKGSDKN
PHVHGLTTATSVWLSAALGLMAGGALYPVAFFAAFTAVFYLRFGPSTH
3409 PF01705
(CX)
 click to view
Estimated TM-score=0.57;
very hard target.		 >CX module (Length=60)
YYWHGFYEKTSETTKKICKYGITEADGELQNVRFENGTSPKAISFGCSKWDECCGFKCCN
3410 PF01646
(Herpes_UL24)
 click to view
Estimated TM-score=0.57;
easy target.		 >Herpes virus proteins UL24 and UL76 (Length=172)
RLPTKRKLAGQKAHLEMYRKLAKYSSVGHLLKFLAIDHPCPTRCQLKIFFEVCLGNRIADCVILLSCGETRLCYIIELKT
CMSDSPSMYNETRLCQRSQGLCQLSDALRFISFNAPAGRQKWHLVPHLIFKSQRGLKTIYTETPQFPTNIIHSSPDKLAS
FFFSRADREVSE
3411 PF01579
(DUF19)
 click to view
Estimated TM-score=0.57;
hard target.		 >Domain of unknown function (DUF19) (Length=159)
CTSEHAVLTMLNCTSTLLDMIEIAKAHPKDFESLKAYLECCEHFMTCDQSYKCQNNTKYEEDLRNHETKCIDNLHILEEF
HDCERKLKISNTTCYQNYNPFKGNDIILKMAKKEKESCDTFFGEDDCMIKETIEKCGKTQAQRYQKELRIIAEALAICD
3412 PF01552
(Pico_P2B)
 click to view
Estimated TM-score=0.57;
hard target.		 >Picornavirus 2B protein (Length=99)
QGITNYIESLGAAFGSGFTQQISDKITELTNMVTSTITEKLLKNLIKIISSLVIITRNYEDTTTVLATLALLGCDASPWQ
WLRKKACDVLEIPYVIKQG
3413 PF01160
(Opiods_neuropep)
 click to view
Estimated TM-score=0.57;
hard target.		 >Vertebrate endogenous opioids neuropeptide (Length=46)
DCQRDCLSCNRHLYNQQDNFNVLVCIMECEGKAFSSTTWELCTKVV
3414 PF01141
(Gag_p12)
 click to view
Estimated TM-score=0.57;
very hard target.		 >Gag polyprotein, inner coat protein p12 (Length=84)
PALTPSIKSKPPKPQVLPDSGGPLIDLLTEDPPPYGAQPSSSARENNEEEAATTSEVSPPSPMVSRLRGRRDPPAADSTT
SQAF
3415 PF18802
(CxC1)
 click to view
Estimated TM-score=0.56;
very hard target.		 >CxC1 like cysteine cluster associated with KDZ transposases (Length=105)
NWSGTNAYEEYKSDACKCTAQQKTTRPIDMVDIYAQRRRPVEFCKCTYDAVRLLRLGYLAGSPLKPQTAFSLPLLIFHNS
LWNNCNIGMLPFTVALTEFLEPRSE
3416 PF18759
(Plavaka)
 click to view
Estimated TM-score=0.56;
hard target.		 >Plavaka transposase (Length=318)
FDSYDHMYAVIDEIGEGSAPWKCFVSQGEENLPPNAPNWRREEYQIWYRDPQTVIANMLDNPDFTGEFDAAPYIHLDPSD
KRRWGDFMSGNYPWRHSKTQIFEEDPSTEGAMYVPIILGSDKTTVSVATGNVEYHPLYMSIGNIHSSVRRAHRNGVVPIG
FLAIPKSDRKYDKDPAFRAFKRKLYHQSIASILSTLTSGMCTPEVRRCPDGHFRRVVYDLVAFIADYPEQVLLTGIVQGW
CARCTAFASDLDGSEASGRRSKDLTSDLIQEFQGQGTLLWDNYGIDDEIIINIHEMISSDLLHQIIKGSFKDHLVTWV
3417 PF18753
(Nmad2)
 click to view
Estimated TM-score=0.56;
very hard target.		 >Nucleotide modification associated domain 2 (Length=203)
MAKVYFYVVARDFGFAPNPFHGMCTLATCKPTIRRTARAGDWVVGMGGAKLDAVGRCVYAMQVTDARTFEKYWEELEFRA
KRPVRNGSRKTIVGDNIYHRSSSSKKWQQEDSHHSKPDGSPDPHNIQHDTQTNRVLISNQFYYFGKTAPLVPKEILDDLG
FRNGVGHRVFSIQDAQPFLSWLDTSFGSEVNLVLGDPFQFTQS
3418 PF18746
(aGPT-Pplase3)
 click to view
Estimated TM-score=0.56;
very hard target.		 >Alpha-glutamyl/putrescinyl thymine pyrophosphorylase clade 3 (Length=274)
ARDTLAMQIVASLRREEYYQVIQRRGPISPRRADPHHDSFEAELGVVHFIQQNAYDEAAWLIFLMVHLGKPATDGWRRLR
DIYGKLGQGRWDWAAGSTNPAAFEQWLAANWQSIRGKFGNHRKYESLDPSKQRAMGPAVVDYVNWVNAAGGHQALFSQII
LTAGNDPNVIFDAFYKALPVKGYGRLGRFDWTTMLSRYGFAPAEAGSAYLKTATGPKAGMRLLFAGNANSGTGYVPLQQW
LDELDTTLQVGMEVLEDAICNWQKSPTAFVHFKG
3419 PF18738
(HEPN_DZIP3)
 click to view
Estimated TM-score=0.56;
hard target.		 >DZIP3/ hRUL138-like HEPN (Length=147)
PGKLDTVLSSPPVHKALQLLKKKKVLNPSQWGKLYPAIKSSVSSQHFDITLLMVLLRNICGLVPPATGWNTLPPAADTTL
EADIIRIKYYRDKVYGHAIEASVDDASFNQHWMDIRGALVRLGGARYQGDIDNLKKEGMDPEIEEHY
3420 PF18476
(PIN_8)
 click to view
Estimated TM-score=0.56;
hard target.		 >PIN like domain (Length=229)
FIFDTNVLLKLYSYQPNTLSDFFSILKKLGDKIWIPHQVGLEFQNRRLDIKAKEKQKFSELEKQLDEILKVENKINQLFL
KGRFPNLDVATENLFNDIRKLVDGYKNTLNQCNESQPNIRSHDSIREKIDDCFKGKVGSPFSQEDLEKIYEDGEKRYENK
IPPGFKDNNKNSSTDYFYKGVEYKRKFGDLILWKQIIEKAKDENIKNVIFITDDEKEDWWYIAKENGDK
3421 PF18474
(DUF5614)
 click to view
Estimated TM-score=0.56;
very hard target.		 >Family of unknown function (DUF5614) (Length=221)
MASYAMLQERIAVAKDLLERVESISGGQKKGVEGKAKLCSKLRAELKFLQKVEAGEVVIKESHLQSTNLTHLKAIVESAE
SLEDVVSVLHVFTYEDQAGEKQTLVVDVVANGGHTWVKAIGRKAEALHNIWQGRGQYGDKSIVKQAENFLQASRQQPVQY
SNPHIIFAFYNGVSSPMADRLREMGISVRGDIVAVNSVAGAEEGEDALSDSSCESDADGDE
3422 PF18197
(DUF5602)
 click to view
Estimated TM-score=0.56;
hard target.		 >Domain of unknown function (DUF5602) (Length=53)
DASGNPTEIGMRLTEAALTGLPTTNTNPPAWYMLALPANSTAKLPFNHLSLDW
3423 PF18183
(SLATT_2)
 click to view
Estimated TM-score=0.56;
hard target.		 >SMODS and SLOG-associating 2TM effector domain 2 (Length=191)
DLTGMPFPLGDWGEPAERLDELYRWVESHALRTAEWYLSDRVWKRRSARILRVGTAAGVIAGAALPLLDLTGAIEGAAGW
GYLSLLLGAACMACDRYFGLTSGWMRDVATAQAVQRRLQALQFDWASESVREVLGPTEGTASEAAERCLGVLRRFSEDVT
ELVRAETADWMVEFRSGPAPLMLQSVGVAPA
3424 PF17731
(DUF5570)
 click to view
Estimated TM-score=0.56;
easy target.		 >Family of unknown function (DUF5570) (Length=123)
AISWELDNVLMPSPRIWPQVTPTGRSASARSEGSTSSLWNFSAGQDVHAIVTRTCESVLSSAVYTHGCGYVRSATNITCQ
SSGQQRQAARQEEENSICKAHDSREGRLGYPLSAHQPGSGGPN
3425 PF17606
(DUF5502)
 click to view
Estimated TM-score=0.56;
very hard target.		 >Family of unknown function (DUF5502) (Length=87)
VLILLIIKISVWKDEPFHLSDAKEIECLGSCEIKNTNQKIHFFSIKENLFEEKGDIAGILNEDEQKVADKSIFIVILDDE
KGIANEE
3426 PF17602
(DUF5498)
 click to view
Estimated TM-score=0.56;
very hard target.		 >Family of unknown function (DUF5498) (Length=96)
MKSSLRFLGQELVVEGVIPADNAFNEAVYDEFIKIFGTDKKFGIFPSENFSKPEQTESIFQGVVTGKFESEAPVKIEVYI
EDSLVASVAAFISFRK
3427 PF17593
(DUF5490)
 click to view
Estimated TM-score=0.56;
hard target.		 >Family of unknown function (DUF5490) (Length=62)
MNPESKLSQRIAEERAKFFQNMKHNGIEDEVFLNWFWNNKYAACEGALSLSVAMMYEGWKGA
3428 PF17568
(DUF5474)
 click to view
Estimated TM-score=0.56;
hard target.		 >Family of unknown function (DUF5474) (Length=77)
MYKITNVSFVEYYSNNVSKDVIYSYLMNSTCSNKGTIKLNLESGKRLKQEGPYILPPIRWLDSFEKNAEFTILCEVD
3429 PF17560
(Megourin)
 click to view
Estimated TM-score=0.56;
very hard target.		 >Aphid Megourins (Length=63)
YLDVNQIASYLLCLGQGAVFNGRKTCQIGCRAACQQPGCGGYKECEQIPNIRLHKYRCHCNSG
3430 PF17448
(YqaH)
 click to view
Estimated TM-score=0.56;
hard target.		 >Uncharacterized YqaH-like (Length=87)
MNLNHFLKSDREKAERLYKSLQFLVSELLADAVKEGDFDGCIELAGSIVDHSRDLKKMQHPEKVVELHEIASEFAKRGLN
VVPVKPP
3431 PF17399
(DUF5405)
 click to view
Estimated TM-score=0.56;
hard target.		 >Domain of unknown function (DUF5405) (Length=95)
QNPAYNRVDINGRYAIAKVGYDFALGEVQCDNRDGAQPYLSTLAVYQTPITLVNDFVHRSLCAEIRRGTVTDITTMLTEA
ERLSLLCLNAFEQLE
3432 PF17363
(DUF5388)
 click to view
Estimated TM-score=0.56;
easy target.		 >Family of unknown function (DUF5388) (Length=68)
DSGVTFPVNVRVDNHIRNKISALLNLGMAKSQKELVKQLVENEIDRLPESDKSRFDRMFEILEEKDNM
3433 PF17333
(DEFB136)
 click to view
Estimated TM-score=0.56;
easy target.		 >Beta defensin 136 (Length=51)
NDGVELRTCTALKGRCFFGCRVGWTWVAFCHNILSCCTKMKKNLPPQVKEP
3434 PF17326
(DUF5365)
 click to view
Estimated TM-score=0.56;
hard target.		 >Family of unknown function (DUF5365) (Length=114)
MKVVYASTPEQEQKIKELVDYFYSNVFPIYFSDEDIMEFNRLKVLHTSTRHFEYFGTLKEAYQVIASLQTLISILETSQS
KEKYYSLFVKNASILEEFDIYFPFTFSQFSETRN
3435 PF17275
(DUF5340)
 click to view
Estimated TM-score=0.56;
hard target.		 >Family of unknown function (DUF5340) (Length=70)
MEPIPLPSYIHYELLLQLLERQTSFAVNQQPAVREQVHQLIVTLRKALAQQKQLEQSCQRANLPIEYRWS
3436 PF17260
(DUF5326)
 click to view
Estimated TM-score=0.56;
hard target.		 >Family of unknown function (DUF5326) (Length=70)
MREIFAGLPWWVKWIAVPVIALVVFGGLIASVVGFVIGLLFKVLVFVALVGGLIYVVRKFTSSSSSRGDW
3437 PF17255
(EbsA)
 click to view
Estimated TM-score=0.56;
hard target.		 >EbsA-like protein (Length=134)
FGKIRYHWQPELSWAIIYWSIAIAPIFIGLSLLYERTEIPSQVFVLFAIFIVLVGIGFHRYFVIEEDGYLRIVSFNFLRR
SKFPIEDIAKIEVTKSSVTIKFNNNHERIFYMRKWPKKYFLDALAIEPKFKGEV
3438 PF17227
(DUF5302)
 click to view
Estimated TM-score=0.56;
hard target.		 >Family of unknown function (DUF5302) (Length=50)
NDEIKRKFREALDRKNHQQSNSAAHLDGQSKVHDAHGSAEHKREFRRKSG
3439 PF17198
(AveC_like)
 click to view
Estimated TM-score=0.56;
hard target.		 >Spirocyclase AveC-like (Length=234)
ERRITLDGMIMVSTGLFFFQDPLLNYINTWCTYNAWAFNMGSWAPHVPGWLSPERPGAQVAEPLGINVSGYAYGVLLCTI
LGCWVMRKAQQRWPNLGTKGLIGVAFAWGFVFDFVMEGLILMPLGMYTFPGAIQSLSINAGTYYQWPIYEGLMWGGVQAA
LCCLRFFTDDRGRTVVERGLDNVRGGFAKQQFVRFLAIFAAISASFFVFYIIPAQFMATHADPWPEDVQKRSYF
3440 PF17109
(Goodbye)
 click to view
Estimated TM-score=0.56;
hard target.		 >fungal STAND N-terminal Goodbye domain (Length=121)
WDLALKRYTAAVGRQLDDPSLPHPSSVEELLNRLDSQNGHFSQFRENKRSLFNILTCICNPIERFGSMAASIASNAFPAS
SVCFSAITYLIDAAKDVSASYNAVIELFFTLKDFLVRLAIY
3441 PF17096
(AIM3)
 click to view
Estimated TM-score=0.56;
very hard target.		 >Altered inheritance of mitochondria protein 3 (Length=92)
KDSITSGLKSAGKYGYQGTKYVAKTGYKASKKHYNNSKARRERKSGKKNSSDEEYDSEDEMEYERKPTDIRSLKDPKSFP
PPPLKPGQKTYT
3442 PF17050
(AIM5)
 click to view
Estimated TM-score=0.56;
hard target.		 >Altered inheritance of mitochondria 5 (Length=63)
DILRAQTYVLNNLAQGPASNIPLPPPSRSEQAALARANFVETAKDRWNAEIEGAVRWAQTKDW
3443 PF16938
(Phage_holin_Dp1)
 click to view
Estimated TM-score=0.56;
hard target.		 >Putative phage holin Dp-1 (Length=63)
MSNKTYDTLKWIAMYLLPALGTLYFALAGIWNFPCGEQVVGTITAVDTFLGVILGISTSQYNK
3444 PF16625
(ISET-FN3_linker)
 click to view
Estimated TM-score=0.56;
very hard target.		 >Unstructured linking region I-set and fnIII on Brother of CDO (Length=65)
ARPGTTLRPWRDAKLDTATPPMPPSRPGSPEQMLRGRPGLPKPLTSMQPASPQCAGEKGQVAPAE
3445 PF16438
(DUF5035)
 click to view
Estimated TM-score=0.56;
hard target.		 >Domain of unknown function (DUF5035) (Length=147)
CSNSGESPVIKIEKLYVKAEPDSDSAKEEDYANKMDELPALKVGDEVKALLLLDGNGAELKTFKLQKDNDEALDTKLNYE
KNEVSTEGNLTDEENGQLRFKDGVTQTKVLVQATIKQVDKNGDVRLEFYLSSKAECEGAQEEIGLKT
3446 PF16437
(DUF5034)
 click to view
Estimated TM-score=0.56;
very hard target.		 >Domain of unknown function (DUF5034) (Length=150)
LKEVELYHWDNAGEKPKEALDNKVLKEAYMMEIRLLTDAGEKDPESYDTDHYLRHVLSDGIKKIQIFTETAFNEEFPAGA
EVTSCFYDYPKTFVKDQQTDYTVNGGVISMIDEVNKIYKALLTIPQSGGEFRFRVVLTMESGETVERLSD
3447 PF16427
(DUF5024)
 click to view
Estimated TM-score=0.56;
hard target.		 >Domain of unknown function (DUF5024) (Length=108)
QKNIDKMAAELEKRDDVAINSVTKRDPKTRKVVKVVKSFSLKDENIGARLIEAFEKDEEYAETAIKDMPKGRGKAQKANF
TFIYKTDNEKRTYTLNVKESGSVSMTVI
3448 PF16395
(DUF5004)
 click to view
Estimated TM-score=0.56;
hard target.		 >Domain of unknown function (DUF5004) (Length=147)
EDGSYVDPITIYEKVNGNWGLTNLKMVDEFAKTNKIEPNEENLSTFFNYEDFKINFSVDEKNRPTSYEVTGNVPPLFALK
GYWELSSDFQQTNASAVKIYLYSDAQKTQKTDELRLSSVPGKSGEMEFQLVRSSEGTAFLTYVFKLN
3449 PF16206
(Mon2_C)
 click to view
Estimated TM-score=0.56;
hard target.		 >C-terminal region of Mon2 protein (Length=785)
TDFLTVMPWRCLPLCISTAAKFGSQTQELNISLTAIGLMWNISDFFNQNQDKLMSTQLQDVAILPEFPGTVKMPQFDKLW
MCLYAKLGELCVDLRPAVRKSAGQTLFSTISAHGSLLNPPTWQALVWQVLFPLLDNVRALSSSASNEKVDASGNILIHHS
RNTAQKQWAETQVLTLSGVCRVFNTKRELLQMLGDFERAWSLILEFIQNAALSKNGEVSLAALKSLQEIMYHNTTTERTV
GGVGGASLKDPQTAQEQDEEIWTYLKSIEKQFSTFRVNHMELFFIAWNIWLSIGMESTKMSTTKAQPQPSSNGGSNGSQD
SQEDFYIPSQAFLTALIQIFPAIFHHIQVKFSPTDFDKFCTVLTNAVCIPVQTDAVPYIMSTVSDTLLTPLHDGILDCME
LIQKEATKPDSHISQLIPAIFRQLLIFSKFACAPPTFQQNVEHKYAKSTSGHYANNASVEVVGMNYIPFGEKSISICVKL
YQTTATEESVVQEQILHDIVKAVRTPLAMKYKCLSSSTWKLAISSLISVLHTGLKVARAKPQHFASLWDDLADTLDKFLF
PASVCTIEDRGLEEIVLDETIDCHVIELLRDEVLPHAHEMPHQFIMQIVVLLNKGSIHSASDTNICYESDWKLREIFAKT
CFETLLQFSLLEDHHATNNNRINANLLPAGAAGAVGKDFAGRLAVTALLHRFQEVLKRFNDDERQSGKCPLPRFRLSEIS
FVLKAIATLVVSMKKAPASKVNKPAWDQLIGLYPYLVDCTTTTSPEVSRSLREALLQYTDLLQAP
3450 PF16163
(DUF4869)
 click to view
Estimated TM-score=0.56;
hard target.		 >Domain of unknown function (DUF4869) (Length=128)
IYNTAVYFKNTYEDAWITEPLSREMIQDVDHSTVLDGGVIDSPVLGKIPPVQLSGGVKTLILVANEPDKVFNASTCGDNC
AKWLLKIAEEKDVTINLRHLMNFGNEPFTIHILNTNQIVHSMKELIPI
3451 PF16151
(DUF4859)
 click to view
Estimated TM-score=0.56;
hard target.		 >Domain of unknown function (DUF4859) (Length=116)
DWTATYFQLDKAQIAKNLGLTEQTLVTNGGSSVTVYSVKEDGTKVAPNSKHAGAGGNAGDWHDANGHSLSASTGIFYHVI
NYSNFSVGIGQRPTAGITYGQSFAFKLVVEYIPASG
3452 PF16148
(DUF4856)
 click to view
Estimated TM-score=0.56;
very hard target.		 >Domain of unknown function (DUF4856) (Length=360)
PNTYVFERDGNTTVSFSGQTTRIQMAQEIVSGLSNTANTETILDNMFAHQEGANDFSDAALNASNKSVRSKTAASTDYYA
ANTTDAATIKATFDFFIEEQVNTVFPNWDTDASAGVAGSIQEAGGGSTRYVSEKGLEYNQAFAKGLIGALMVDQIVNNYL
SPAVLDAGDNEANNDADVLDGDNNYTTMEHKWDEAYGYLYGNEANPAVPVLGADNFLNKYLSRVENDEDFTGIAMEIYNA
FKLGRAAIVAKDYALRDAQANIIKEKISEIIAVRAVYYLQQGKADLGSDWASAFHSLSEGYGFVYSLQFTRKPGTNEPYL
SKDEVLFYTDSLMEGNGFWDITPETLDTISNEISAEFSFT
3453 PF16117
(DUF4833)
 click to view
Estimated TM-score=0.56;
very hard target.		 >Domain of unknown function (DUF4833) (Length=138)
FYIQRDPNTNTICYEVNVDNDGKLEKNNPIHGYWIRYPEGGQRKELNFIQRKFAYGINSKSIGNDAYELRSVAYNKIPLY
LRKDPDNQYHVYVDIDKKECILNRIFIRIDGGTFWHPNVLYIELKGVNPATGKTVVQR
3454 PF16108
(DUF4826)
 click to view
Estimated TM-score=0.56;
hard target.		 >Domain of unknown function (DUF4826) (Length=129)
EALRQEWVRTQFQKANRFLAEKGILPGKVLIDESRYLVPYVAVWKMEAQKPAKQTYWVMSGDLPTDYVDVKVAQTARDAL
KHFSMMWQLKAENLIQSGAVQDPTQAKFANMLISRAQSLYQIQQDDKLW
3455 PF16104
(FPRL1_inhibitor)
 click to view
Estimated TM-score=0.56;
easy target.		 >Formyl peptide receptor-like 1 inhibitory protein (Length=105)
FFSYEWKGLEIAKNLADQAKKDDERIDKLMKESDKNLTPYKAETVNDLYLIVKKLSQGDVKKAVVRIKDGGPRDYYTFDL
TRPLEENRKNIKVVKNGEIDSITWY
3456 PF16096
(FXR_C1)
 click to view
Estimated TM-score=0.56;
very hard target.		 >Fragile X-related 1 protein C-terminal region 2 (Length=75)
GGGSSISSVLKDPDSNPYSLLDNTETDQTADTDASDSHHNTNRRRRSRRRRTDEDATLMDGMTESDNASVSENGI
3457 PF15997
(DUF4772)
 click to view
Estimated TM-score=0.56;
easy target.		 >Domain of unknown function (DUF4772) (Length=123)
KRLAKRSIIGTRVCAPGADGIWYSGTIQGVKTPPSANQKDNTNCINLTPHTRYSVRFDSKQDISRRGLAREFRESELIGP
GFKSIMDVRLKPGQKVFLTYNGRESAGEVVQHDDLKDEVTVKI
3458 PF15878
(DUF4733)
 click to view
Estimated TM-score=0.56;
very hard target.		 >Domain of unknown function (DUF4733) (Length=94)
AMLGALHPRAGLSLFVLYLLLAAALLRPQPLRQQQAVPEEFSAPLELSQPLSGLVDDYGIRPKHPWPRGPRPLLSRAQQR
KRDGPDMAEYYYDA
3459 PF15600
(Imm64)
 click to view
Estimated TM-score=0.56;
hard target.		 >Immunity protein 64 (Length=207)
MGSYISIGLTYGIVQRFANLVYDDATNNKIEKELKKLIEYFLDSDGIIKNIKYSEDLEGEHWKEVNSPSPFFPRDCYKSF
SRGFYGEVAVHADILKRRGVDLIMRLEKQSEFFGFLLDIKEEDLLETHSKEEIGYMTEELIDTMMSIYKYSKYDYTFCDQ
EAEFKYSLSSLKKLKEDVYSIVIIPDSDNNSFTVIKSDWNIDGLTGR
3460 PF15572
(Imm45)
 click to view
Estimated TM-score=0.56;
hard target.		 >Immunity protein 45 (Length=94)
LVNYPSKALVHGTVLRLPGQWPYEELVDFMVFDMPGGDRSNGLMVSSGHKAGLILVLLPQDSELKEVRGLSTQWVIDNWE
KWIYPECNINDVHV
3461 PF15101
(TERB2)
 click to view
Estimated TM-score=0.56;
easy target.		 >Telomere-associated protein TERB2 (Length=204)
FQGQRGWFCGSVSQDLRQFWVAEGGTISDPRAADFLFSCDASHPDTLRIYQSLDYIEDNATVFHAYYLSAVANAKIKNSV
ALGHFILPPACLQKEIRRKIGSFIWEQDQHFLIEKHDEVTPNEIKTLRENSELATEHKKELSKSPEKHFIRTPVVEKQMY
FPLQNYPVNNMVTGYISIDAMKKFLGELHDFIPGTSGYLAYHVQ
3462 PF15023
(DUF4523)
 click to view
Estimated TM-score=0.56;
easy target.		 >Protein of unknown function (DUF4523) (Length=166)
NLHKLLPNHLMETLYSYKSEEDKKKCENPELSGLERILARHQLPKEINLTPKPNRMPPWKRKIINNVTDGWKKCHLLKRN
MKEPPMSTIVVRWLKKNMQPTEDLKSVICRLSAFGPIQSVTVCGRQSAIVAFKDMTSACNAVSAFQSRTPGTMFQCSWQQ
RFMSKD
3463 PF14976
(FAM72)
 click to view
Estimated TM-score=0.56;
easy target.		 >FAM72 protein (Length=144)
STFKNKCVSVLCCNFCDHILCTRGMKAVLLADAEIELYSTDIPPTSSVDFVGSCYSTEGCKCKLKDIACLTCGNIVGYHV
VAPCKPCLLSCNNGHFWMFHSKAVSAFNRLDSSGMNLLLWGNLPETEESENEDLDSLSEEECIR
3464 PF14912
(THEG)
 click to view
Estimated TM-score=0.56;
hard target.		 >Testicular haploid expressed repeat (Length=59)
WAVSLGAKTAEERERTMQLAQPKKPDARYRPCRDPIWPVAEAAKRGSPTPRVENLARPK
3465 PF14780
(DUF4477)
 click to view
Estimated TM-score=0.56;
hard target.		 >Domain of unknown function (DUF4477) (Length=190)
WNQVRIPSPGSLSTVAVEDEDGAIGSYIKAVIKECHTVKMSLIRKDLDAETGVLRAILYSNHNKLCHHKPYLALKQVEQC
LKRMNCVNLEGSIQDFFELCPKEDELESRKKYIIPSQPVMEFVLMKILGTCKLILRLLDCCCKTFLFSVKHLCLEEFIIL
NTVITGLVSRLWVLYKDVLKKLVSLYQPLF
3466 PF14761
(HPS3_N)
 click to view
Estimated TM-score=0.56;
easy target.		 >Hermansky-Pudlak syndrome 3 (Length=223)
RVITVHNFLGQNVTQIEEPTATCTATSQRREMLLLALSTHCVEVWELMNSDVKLRTVFPTVDMINQMVHCAKGDYIVTLE
SKYLRDTVSNNHANKVTSNFVRIYVNWATVKDQSQPMRARIAGRVTPSLNRPLNSLEMIELPLNMQPTLIACCQSTGNLL
VASGNTAVLHEFKIETQQVSKMKFIDFESRPWSLGFSFAPTHMEIVEDFIAIMDNVNLSVFRL
3467 PF14653
(IGFL)
 click to view
Estimated TM-score=0.56;
very hard target.		 >Insulin growth factor-like family (Length=82)
LWLCEQAPRCGGRIYNPLERCCDYGIIEPLNLTRHCGPRCTFWPCFELCCPESYNSQRVYVVRLKVRGAKSRCTSSPISR
FC
3468 PF14536
(DUF4441)
 click to view
Estimated TM-score=0.56;
hard target.		 >Domain of unknown function (DUF4441) (Length=118)
KNVVKNIMSAFKTFVLTWGEKKAIEQIYNSSNSSCEEIEDIQRKFKRYIGSKSFNHYSLRLLILHVNYGPIFKFFLEKFS
TEWLENSKIKDTESHQKMIQFFLSCFEDIKIIDALRRH
3469 PF14484
(FISNA)
 click to view
Estimated TM-score=0.56;
hard target.		 >Fish-specific NACHT associated domain (Length=71)
HRTNLKEKFQCVFEGIAKKGSPTLLNQIYTELYITEGGTEEVNNEHEVRQIEMASRKPEQHETTIRQEDVF
3470 PF14435
(SUKH-4)
 click to view
Estimated TM-score=0.56;
easy target.		 >SUKH-4 immunity protein (Length=190)
VPARLLDQEFGHGRVTRHEEVDLPATLTHEPTRRFLRETGLPEAAVVFHADTDGPLRTLTEFTTGEPCDDRSGRPAPSAD
ALPAHSDHLIRLGHLVEDNSLVVDGRTGAVLTYSAPDATLHALNTDVSTLAFTLWLLHHERTIDEHLSRELTTDAYDQLA
AAMIQTLASVDPTAAAPATEWHYWTELFQD
3471 PF14308
(DnaJ-X)
 click to view
Estimated TM-score=0.56;
hard target.		 >X-domain of DnaJ-containing (Length=222)
IEMRKELSNKLIDKLSLFTETDMKDDVAQSFKGKLQYEAESLKMESFGLEILHTLGSIYKTKSKIFLKNQTFFGWGGFWH
SVKEKGGVVKDTFSTVSTALDAQRTMEEYSKMQQDNEYHALKEAEEEEAKKSAAEQEHTPEELAEMEKYLMGKVLAAAWS
GSKFEIQGTIRGVCDNILYDEEVPLKKRIDRANALKLIGEVFSAVTRTEDEDEEARIFEQLV
3472 PF14282
(FlxA)
 click to view
Estimated TM-score=0.56;
hard target.		 >FlxA-like protein (Length=103)
SLSSIGSGSSGGGSASQVATLNKQITQLQAQLKDLGNDTTLTDEQKSEQQQLIEGQIQMIEAQIAQVEQQQAEKAQEKQS
SAKDDTANTISKAADGVNRPTAT
3473 PF14244
(Retrotran_gag_3)
 click to view
Estimated TM-score=0.56;
hard target.		 >gag-polypeptide of LTR copia-type (Length=44)
HHGESPGAILVTQLLTEDNYPNWARAMLMALDAKSKLGFVDASV
3474 PF14223
(Retrotran_gag_2)
 click to view
Estimated TM-score=0.56;
hard target.		 >gag-polypeptide of LTR copia-type (Length=132)
RKARAIIGLCVTSQHLATIQRSKTAKEAWDSLAAIFKTKGTALKLRLRRDLSSFKMAAGEPLTKYFARAKALQDKLLESF
PDFKEEDIFWPTVQGLPSTYDTILTIIENTADAELTLDSVLPKLMQVEQRQR
3475 PF14218
(COP23)
 click to view
Estimated TM-score=0.56;
hard target.		 >Circadian oscillating protein COP23 (Length=130)
TFYCGVSQGVPATIARTPNGNITVIRWVSTYFYEAGYDPQRRCEEVTGRFQTYKNNGTLNYITTGVINSQPVVCVSSTNG
GGCKGLLFTLKRGENASRVVQQLFNVRVGASGPLNESSDRVYIDVNKLLN
3476 PF14166
(YueH)
 click to view
Estimated TM-score=0.56;
hard target.		 >YueH-like protein (Length=80)
KIRKANINTQNGMITDVYLHENRKELRTLVAVPQLEWSTIISYEDDKATLPERLEASLRRHTEETPAGELAKKIIHWVTE
3477 PF14148
(YhdB)
 click to view
Estimated TM-score=0.56;
hard target.		 >YhdB-like protein (Length=70)
MNNVDYDKALYYTHRSQWDNLLILMVRTKDDFLSKKIEHFLHAYNFEHDYKEVEKQLYSLLRYIDHAVET
3478 PF14105
(DUF4278)
 click to view
Estimated TM-score=0.56;
very hard target.		 >Domain of unknown function (DUF4278) (Length=57)
MQLTYRGIPYNYTAPEVETPPVKTVGKYRGLDWRFHTDNKTVVQQPTVELKYRGVAY
3479 PF14094
(DUF4272)
 click to view
Estimated TM-score=0.56;
very hard target.		 >Domain of unknown function (DUF4272) (Length=212)
RKQRSMQLLREQGIPVIDHLPVIVGDEDAVIRTKDEIVQRAIALCLIAVYSGGIAENGNVEEEREFIEGIIEQYGAEGFF
TEKERAFLYNDAPDRTDTIQMVWMYECYWVLLWALGYVETLDFPSDICDVQSAIDCLRLAENYDAFYQNATVRSKTEILD
QADLIYRYDWACVDARINNRPVAGGLNDEVVLERHRALNWLVRYMDADWDDV
3480 PF14050
(Nudc_N)
 click to view
Estimated TM-score=0.56;
hard target.		 >N-terminal conserved domain of Nudc. (Length=59)
LDNIFLGILQNCGQIEPFLDVVFSFLARRTDFYVIMNSKQDKMGFPDGIAEQMVLKIFR
3481 PF14025
(DUF4241)
 click to view
Estimated TM-score=0.56;
very hard target.		 >Protein of unknown function (DUF4241) (Length=187)
SIPTGQILVRDPLYYLGNRQEQPYFQTVPAGTYRTEVCVVKPDEEDCARYAAVRVKFADAPAVRFEEALIGHEDLTDLGE
GEFFGFNVDAGLACICDKQLHHAFCDFKEKWHKEHPGENLYDHYFAALFAESFRQNPQYQREGGDWLNWQIPGTEYHLPI
FQSGFGDGAYPVYWGYDETGAICQIVV
3482 PF14015
(DUF4231)
 click to view
Estimated TM-score=0.56;
hard target.		 >Protein of unknown function (DUF4231) (Length=105)
DQLLWLEKRANTFRDRFYQLRMATIVGGVIIPALVSLNISGKSGDALRWTTFGISQLVAISAAVEEFFRYGDRWRQYRNT
AEGLKIEGWQFFQLSGPYRNSTTHS
3483 PF13997
(YqjK)
 click to view
Estimated TM-score=0.56;
hard target.		 >YqjK-like protein (Length=73)
LLQEIQQQRLDLANSAAHWLEVTAPYDRGWAKIVGMRKYLMVGSGIVALYGIRHPSKLVRWSRRAVSIWGTIR
3484 PF13957
(YafO_toxin)
 click to view
Estimated TM-score=0.56;
very hard target.		 >Toxin YafO, type II toxin-antitoxin system (Length=104)
SYKKDGVLPDTFGRDAPYDDDRTYPLIKEEQVAHIHLADADAPFPKFLRQFKRTSDQAHLVYCQGAMDPDAYLLIIILKP
EAHKMARNNNHMHKIGMMAEAFRM
3485 PF13681
(PilX)
 click to view
Estimated TM-score=0.56;
very hard target.		 >Type IV pilus assembly protein PilX C-term (Length=90)
GLIKQIPGNTTAPDKWTESQWSASAAAYSGGAIGGVSTAPRYVIEKLDSTLPSPSAQAAQALESKTLYRITARATGGTDS
SKVILQSIYK
3486 PF13586
(DDE_Tnp_1_2)
 click to view
Estimated TM-score=0.56;
hard target.		 >Transposase DDE domain (Length=90)
VHVDKIYRTRENRAWCKERGIRISGPPLGRPPKNVSQEQKKQAADDERIRNCIEGKFGQGKRRFSLGRVMAKLPHTSLTS
IAITFLVMNL
3487 PF13569
(DUF4132)
 click to view
Estimated TM-score=0.56;
very hard target.		 >Domain of unknown function (DUF4132) (Length=186)
GKQLKSVPAKLKKDEYIVAITEAKKQMAEQARRTRAMLEDAMESQETYTYAEIQGMLENPVIHDLVAALVFRVMDGGGVS
DHTQEEQVVFGFVTAKGMDIIGSHHIEPSGDTLLTVAHPFQMYKQGMWHTIQKYVFDNQIIQPFKQVFRELYVKTEEELN
MEHSLRYAGNQIQPRKTVACLRTRHW
3488 PF13233
(Complex1_LYR_2)
 click to view
Estimated TM-score=0.56;
easy target.		 >Complex1_LYR-like (Length=88)
RSLYRSLLRELPPRPILARNRSPIHSRIRSSFAEPAAAHPNAAAEAVQFLDYLRAQRVYATLLERYNPGMGMDEEERVRL
TARRVGMD
3489 PF13224
(DUF4032)
 click to view
Estimated TM-score=0.56;
hard target.		 >Domain of unknown function (DUF4032) (Length=163)
ELWSALTDEESFGADERWRVAARIDRLNHLGFDVGELEITTDIDGTSVQIQPKVVDAGHHSRRLMRLTGLDVQENQARRL
LNDLDSYRAAMDRQNDDEEFVAHDWLSGVFEPTVRAVPRDQRRKLEPAQLFHEVLDHRWFISEQQKRDVPMPEAVESYVE
NVL
3490 PF13222
(DUF4030)
 click to view
Estimated TM-score=0.56;
hard target.		 >Protein of unknown function (DUF4030) (Length=141)
DTPRTVDLEIADTVNTSKLKKAINTQLKNQDIRPYTINVSQRNMDIVKKERRWSEVYSSIFDEVFTKNGYKGFGIQPVNF
ESNQPFTLAIHTTINNSDPGAKDFGKKIEKEVDDLLKTKKVNKWIENDLYTVEIYSQDEQK
3491 PF13143
(DUF3986)
 click to view
Estimated TM-score=0.56;
hard target.		 >Protein of unknown function (DUF3986) (Length=87)
YEYDDSVHLHLDYFRTECDMESIAYKRKNEDVWDVYFNFGAYGVQKDEIETGRFMDEYAGHYVFSVHAHDLSWEFGSAQF
EEWVLRN
3492 PF13122
(DUF3977)
 click to view
Estimated TM-score=0.56;
very hard target.		 >Protein of unknown function (DUF3977) (Length=77)
MKYIEIGFGNRWFVRTETENKDGTEFEERGIIKPIYLESLYVRMWFRKTCLILDTKEGFKKVKKRRIEYKFIFGIVS
3493 PF13121
(DUF3976)
 click to view
Estimated TM-score=0.56;
easy target.		 >Domain of unknown function (DUF3976) (Length=41)
MYLFVRKDITKDNTLTKRGFYKLIGCLAVMLIGVIVMIVLV
3494 PF13101
(DUF3945)
 click to view
Estimated TM-score=0.56;
hard target.		 >Protein of unknown function (DUF3945) (Length=59)
EYVPSFISLDKLTNEVVAMRAESAFIPNEISGVTLTDQEKNDLREGKAVYIEGMKSRTG
3495 PF12952
(DUF3841)
 click to view
Estimated TM-score=0.56;
very hard target.		 >Domain of unknown function (DUF3841) (Length=177)
TVWTKQNENVLKEIEKTGRYIAKKEYILKDLDEHAHLVLEVYDWLVKNTPNTTQKPYDAEYPIWVSLAREATMLPSVGTV
LLELKVDPALITMVNINKWGAMLNYSYIPSDEQDAKNHRQLLKAYGVSSDTKAYMSQFYPQIKRRIIDSWHRLFDDSITL
GSDEKYGNIWEVRKEWI
3496 PF12886
(TORC_C)
 click to view
Estimated TM-score=0.56;
hard target.		 >Transducer of regulated CREB activity, C terminus (Length=75)
NIILTVTGESPPSLSKELTNSLAGVGDVSFDADSQFPLDELKIDPLTLDGLHMLNDPDMVLADPATEDTFRMDRL
3497 PF12732
(YtxH)
 click to view
Estimated TM-score=0.56;
hard target.		 >YtxH-like protein (Length=70)
LVGAAVGSLLGSVTALLMAPKAGKKLRQDINELYGDLTDRTHDAADQFTKRGKQFAKSFSGHSHDLADKA
3498 PF12674
(Zn_ribbon_2)
 click to view
Estimated TM-score=0.56;
hard target.		 >Putative zinc ribbon domain (Length=80)
TCQSCGMPMNKPEDFGTEADGSSSVEYCMYCYKNGSFTEPDITMDEMAEKGGAIMSQMFEIPAEKAVGFMKEQLSCLKRW
3499 PF12597
(DUF3767)
 click to view
Estimated TM-score=0.56;
hard target.		 >Protein of unknown function (DUF3767) (Length=99)
PTITDAVSMIKKEDFANVASTPCARQGFLTGIASGAGLGGLKFVLHGNANKAANWAVGMFVLGSVASYEYCQYQRRSERT
QMKRHIEVVSENRREQARK
3500 PF12450
(vWF_A)
 click to view
Estimated TM-score=0.56;
very hard target.		 >von Willebrand factor (Length=92)
NTENYDFIKENSFLDAQKNPLSTFSIDVDNASYSNVRRFLNQGQRPPADAVRIEEMVNYFNYDYPQPAGDAPFSVTTELS
ACPWNKQNQLLH

Search by Pfam ID:
Go to page (83 pages in total): [First page] << < 30 31 32 33 34 35 36 37 38 39 40 > >> [Last page] [All entries in one page].

Bulk download:

[Back to server]

[an error occurred while processing this directive]

yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218