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●I-TASSER ●QUARK ●LOMETS ●COACH ●COFACTOR ●MetaGO ●MUSTER ●CEthreader ●SEGMER ●FG-MD ●ModRefiner ●REMO ●DEMO ●SPRING ●COTH ●BSpred ●ANGLOR ●BSP-SLIM ●SAXSTER ●ThreaDom ●ThreaDomEx ●EvoDesign ●GPCR-I-TASSER ●BindProf ●BindProfX ●SSIPe ●ResQ ●IonCom ●STRUM ●DAMpred

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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13

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Modeling of Pfam protein domain faimilies by C-I-TASSER (Page 37)

Search by Pfam ID:

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# Pfam ID C-I-TASSER models ranked
by estimated TM-score
(click to view)		 Full name and representative sequence
3601 PF06626
(DUF1152)
 click to view
Estimated TM-score=0.56;
hard target.		 >Protein of unknown function (DUF1152) (Length=298)
FVFGIGGGGDIVSAIVVYTYLRKLGYNVLLGAVVWERYVEDPIPGPICFDDLRNAILVNQGLYKVNKDTYAIRGSRQVVP
QLVRAIRALELEGAYGICNKSGAMGLYSSLKEFANTEKIDLIVGVDAGGDVLAKGCEETLGSPLIDFISLASLVKLEEDG
YNVMLGVIGSGSDGELQYDYFLKRISEIASLNGLLDIKGYDRETATLVERVLNEVNTEASKIPFEAFKGLYGEIPIRNGT
RNVFVTPVSAIMFFLDPIKVAETSPLYSLVKDSSSIDDANKNLNEVGIYTEYNFEIDL
3602 PF06591
(Phage_T4_Ndd)
 click to view
Estimated TM-score=0.56;
very hard target.		 >T4-like phage nuclear disruption protein (Ndd) (Length=152)
MKYMTVTDLNNAGATVIGTIKGGEWFLGTPHKDILSKPGFYFLVSKLDGRPFSNPCVSARFYVGNQRSKQGFSAVLSHIR
QRRSQLARTIANNNVPYTVFYLPASKMKPLTTGFGKGQLALAFTRNHHSEYQTLEEMNRMLADNFKFVLQAY
3603 PF06580
(His_kinase)
 click to view
Estimated TM-score=0.56;
hard target.		 >Histidine kinase (Length=80)
ARLDALKLQLNPHFFFNSLASVRSLISEAPRRAKKMVARLARLLRKTLQASDEETVSLREELSTTQTYLQLEKVRFEDRL
3604 PF06578
(YscK)
 click to view
Estimated TM-score=0.56;
hard target.		 >YOP proteins translocation protein K (YscK) (Length=205)
ALTPYQFRFCPASYIHSDHLSPEWLTVLSSLPEWRHSPRLNGLLLTQFDLNVDYELPTGLGNIALLEQSCLEQLLTWLGA
LLHGQAIRHCLMATELRHLHDSLGKEGHRFCLKYLDIIIGNWPTGWQRSLPPEINANYFRTSALQFWLTAMESPPIDFAK
RLSLRLPSYENLAAWPVSQAERPLAQALCLKLAKQVNTECYHLLK
3605 PF06515
(BDV_P10)
 click to view
Estimated TM-score=0.56;
very hard target.		 >Borna disease virus P10 protein (Length=87)
MSSDLRLTLLELVRRLNGNATIESGRLPGGRRRSPDTTTGTIGVTKTTEDPKECIDPTSRPAPEGPQEEPLHDLRPRPAN
RKGAAVE
3606 PF06423
(GWT1)
 click to view
Estimated TM-score=0.56;
hard target.		 >GWT1 (Length=161)
QNREGIFSFIGYLSIFLAGQSLGSIALPRQPKPKPVPNPPSPTSPLHHLTRSTLGQLCLVSIAWTCLFYLCTSYHGLHLT
VSRRLANLPYVVWVASFNSANIALCCAIESLLFPNLYHAKAGSRAEERRRARDATSTVLHAYNRNGLVVFLVANLLTGLV
N
3607 PF06139
(BphX)
 click to view
Estimated TM-score=0.56;
hard target.		 >BphX-like (Length=132)
MKNARLFLIAIGVFYIINLIGTLPFSTLGLFGRMYPGVELHVGAPIFTLLQDAWAVVGLQLGAIGAVALWGARDPGRYRA
VIPVVIATEVVDGLWDFYSIVWSHEALWFGLVTLVIHVLWIGWGLHAWRALA
3608 PF06096
(Baculo_8kDa)
 click to view
Estimated TM-score=0.56;
hard target.		 >Baculoviridae 8.2 KDa protein (Length=63)
DNYSVQNFYNNDRKPLKPTTLHDGNIKKSVYEDVTYIRKLMCKEIMPGEHDHKFYNYGYNKEN
3609 PF05919
(Mitovir_RNA_pol)
 click to view
Estimated TM-score=0.56;
easy target.		 >Mitovirus RNA-dependent RNA polymerase (Length=479)
EFDDSNHFVSVKSSPTGPSTLTALWGLWNHSYESFNWLFKITSLSGVDYLTKIMNWTWLKDLGNKNNNKWSKQFLGSLSL
IYDPECKVRIVAMLDYTTQLFLRPIHNDLFKLLKKLPQDRTFTQNPLNDWENNEHSFWSIDLTAATDRFPISLQRRLLLY
IYSDPEIANSWQNLLVHREYARNGLNPIKYSVGQPMGAYSSWPAFTLSHHLVVHWCAHLCHINKFKDYIILGDDIVIHND
KVAKKYIEIMGKLGVGLSDSKTHVSKDTYEFAKRWIHKGQEISPLPITGIVNNITNPYIVLMNLYDFFKIKRNQYNFSGD
ILTMLLKLYQGLKIYKGDKSKKHYYLSLNRFKNLDIFLFALNNTFGYSTYDHKRSFLISKEYSKDLPGPKIMQDLIXYVI
STGLSNLTVESVNKSLKFVDTIIDNKSLLNIEDPNDLSNLPLFKGFQAYISNLRKTVEGWNNKSISLIEASRGLVQMDI
3610 PF05813
(Orthopox_F7)
 click to view
Estimated TM-score=0.56;
very hard target.		 >Orthopoxvirus F7 protein (Length=80)
MTLVMGSCCGRFCDAKNKNKKEDVEEGREGCYNYKNLNDLDESEARVEFGPLYMINEEKSDINTLDIKRRYRHTIESVYF
3611 PF05751
(FixH)
 click to view
Estimated TM-score=0.56;
hard target.		 >FixH (Length=140)
KQFWPWFLIILPMCAVIASLTTLKIALDNSDSLVAEDYYKQGKAINMDLRKIKYAQQIGMKFLVTVDDQELTITQHGGPE
YRAALNVRFYHPTIEAKDFSLNATADANYVYHIPLDAAITGPWEVRIEGFDAKWRIQQRI
3612 PF05628
(Borrelia_P13)
 click to view
Estimated TM-score=0.56;
very hard target.		 >Borrelia membrane protein P13 (Length=143)
LLVYETSKQDPIVPFLLNLFLGFGIGSFAQGDILGGSLILGFDAVGIGLILAGAYLDIKALDGITKKAAFQWTWGKGVML
AGVVTMAVTRLTEIILPFTFANSYNRKLKNSLNVALGGFEPSFDVAMGQSSALGFELSFKKSY
3613 PF05595
(DUF771)
 click to view
Estimated TM-score=0.56;
hard target.		 >Domain of unknown function (DUF771) (Length=90)
EDMVLITRVEYEMLKQKELSGLYWNMKDLEKRINKKSEWIKENILYPGRFRKILDINKGGFVYYPETKGQHWSFQATKMA
EFLDNNFGNI
3614 PF05398
(PufQ)
 click to view
Estimated TM-score=0.56;
hard target.		 >PufQ cytochrome subunit (Length=74)
MTDMTSNTPVEARSHKPPKTEFMVYFAIIFVATLPLATLTWALAAIKSGSFTEKGPVARAWSQARIITPMIFTA
3615 PF05385
(Adeno_E4)
 click to view
Estimated TM-score=0.56;
hard target.		 >Mastadenovirus early E4 13 kDa protein (Length=108)
MVLPALPAPPVCDSQNECVGWLGVAYSAVVDVIRAAAHEGVYIEPEARGRLDALREWIYYNYYTERAKRRDRRRRSVCHA
RTWFCFRKYDYVRRSIWHDTTTNTISVV
3616 PF05295
(Luciferase_N)
 click to view
Estimated TM-score=0.56;
hard target.		 >Luciferase/LBP N-terminal domain (Length=85)
MASRGQLVQFLANEGKVDQKVIAYMTNQMKLTSVSDFANYFTSSEFEKGVQDDIVAQVSPFNADVSKPDAKIQTARLRAA
WKAAQ
3617 PF04885
(Stig1)
 click to view
Estimated TM-score=0.56;
hard target.		 >Stigma-specific protein, Stig1 (Length=130)
AITLTITFTGSNHEPTPITEPSSSVAKPFPKRVSRFLAESKNPRATDHCYKDDAICYILEGKNSTCCNXKCMDLSQDKXN
CGACKNKCKFTSSCCRGECVNLAYDKRHCGSCGNKCMPGGYCIYGLCSYA
3618 PF04883
(HK97-gp10_like)
 click to view
Estimated TM-score=0.56;
hard target.		 >Bacteriophage HK97-gp10, putative tail-component (Length=85)
KKMAKSFQKALDERVIERWIREFLLEMAFRAERKIKKRTPVGVYPNKTGGYLRRNWQVGNVIKQGDAYIVEIFNNTEYAS
YVEYG
3619 PF04770
(ZF-HD_dimer)
 click to view
Estimated TM-score=0.56;
hard target.		 >ZF-HD protein dimerisation region (Length=54)
NVRYCECQKNQAVGVGGHAVDGCMEFMPSGAEGTDAALACAACGCHKNFHRRVV
3620 PF04554
(Extensin_2)
 click to view
Estimated TM-score=0.56;
hard target.		 >Extensin-like region (Length=59)
YVYKSPPPPPYIYKSPPPPPYVYKSPPPPPYIYKSPPPPPYVYKSPPPPPYIYKSPPPP
3621 PF04259
(SASP_gamma)
 click to view
Estimated TM-score=0.56;
hard target.		 >Small, acid-soluble spore protein, gamma-type (Length=78)
GTDVQHVQKQNSGAASGQYGTEFASETNVQEVKQQNQQAEAGKSYGAQGSGQYGTEFASETNVQEVKQQNQQAEAGKS
3622 PF04143
(Sulf_transp)
 click to view
Estimated TM-score=0.56;
hard target.		 >Sulphur transport (Length=311)
RGRFCLTGAYRDLYLTKDNRMFIAVILAIAVQSIGVFLLYSFGLIQFKEGNFMWLATIIGAFIFGIGIVLAGGCATGTWY
RAGEGLIGSWIALIAYMVSSAMMKGGVLQSLNDSLQSYTVNHVTIYDSFGVSPWVFVILLSVITGYFVWKQLRKPSVKIP
SLKQKKTGIAHVLFEKRWHPFVTAILVGCIAILAWPLSEATGRMYGLGVTTPTANILHFLVSGDVSYINWGVFLVLGIFL
GSLIAAKGSGEFRWRTPDAKTTIFSFIGGILMGIGASLAGGCSIGNGLVGTAIFTWQGWIALPFMIFGTWT
3623 PF03935
(SKN1)
 click to view
Estimated TM-score=0.56;
easy target.		 >Beta-glucan synthesis-associated protein (SKN1) (Length=504)
FPLHIDEKEPDDYLHNPDPVQDALYDKHRFWNDLKNADRRSAWGLVGFIILITAAVGVFIILPVLTFTGVEVHRTPQEYE
VLTDYQYPMLSAIRQTLVDPDTPEDALTITAKDGSQWVLVFSDEFNAEGRTFYEGDDQFFTAPDLNYAATRDLEWYDPDA
ATTADGTLQLRMDAFNNHDLFYRSGMLQSWNKFCFTQGRIVMSARLPNYGTVSGLWPGMWTMGNLGRPGYLASTEGVWPY
SYDTCDAGITPNQSSTDGISYLPGQRLNSCTCKGESHPNPGVGRGAPEIDVIEAAIGTDPTGKTPNIGVASQSLQLAPFD
IWYMPDYSYIEIYNSSVTTMNTYAGGPFQQALSGTTTLNSSWYEFGPFEHNFQRYGFEYLNDDDKGYLTWFVGDDPTFTV
YPQSLHPNGNVGWRHLSKEPMSIIMNLGISNSWAYIDWPSITFPVTFRIDYVRVYQPKDQINVGCDPPDYPTYDYIQQHL
NIFENVNLTLFEMGGYTFPKNKLT
3624 PF03855
(M-factor)
 click to view
Estimated TM-score=0.56;
very hard target.		 >M-factor (Length=44)
MDSIATNTHSSSIVNAYNNNPTDVVKTQNIKNYTPKVPYMCVIA
3625 PF03690
(UPF0160)
 click to view
Estimated TM-score=0.56;
hard target.		 >Uncharacterised protein family (UPF0160) (Length=320)
KIGTHNGTFHCDEVLACFFLRQLPEYSDGEIVRTRDPAQLAECDIVVDVGGEFDPKRHRYDHHQRTFSDTFNSLCPEKPW
VTKLSSAGLVYLHFGRRVLSQLTQLKEDDRQLEVLYDKLYENFVEEVDAVDNGISQYDGESRYSISTTLSARVSHLNPRW
NSTDQDTEEGFKKALKMVGEEFLDRLDFYKSSWLPAREVVEEAVKKRHQIDPSGEVLLFSQGGCPWKEHLFALEKELHVE
TPIKFVLYPDQNGQWRVQCVPAGLNTFQNRLSLPEEWRGVRDEALSELSGIKGCIFVHAGGFIGGNKTQEGALEMARRTL
3626 PF03295
(Pox_TAA1)
 click to view
Estimated TM-score=0.56;
hard target.		 >Poxvirus trans-activator protein A1 C-terminal (Length=63)
AMIKTHVALREEPKITLLPLVFYNKPEEVINIINSLRNKDGVYGSCFYKENDQSVQISLRSLL
3627 PF03181
(BURP)
 click to view
Estimated TM-score=0.56;
very hard target.		 >BURP domain (Length=213)
FFRESMLKTGTVMPMPDIRDKMPQRSFLPRAIVSKLPFSSSNVNVLKEIFHASENSSMESIIKDALSECERQPSKGETKR
CIGSAEDMIDFATSVLGNSVTLRTTQNVQGSKQNIMIGSVKGINGGKVTQSVSCHQSLFPYLLYYCHSVPKVRVYEADLL
DPKTKAKINHGVAICHIDTSAWSQTHGAFLALGSGPGRIEVCHWIFENDLTWT
3628 PF03124
(EXS)
 click to view
Estimated TM-score=0.56;
hard target.		 >EXS family (Length=326)
LQIWGGFLLMILMAWLFSLNCLVWAKFKVSYKFIFEFNEHDALDFKQYMVIPSLLLFIGGLTAWFSFEDFWPNHFSGYDF
PWVFLAAAVAILFCPFDVFFLSARLWLLSTLTRLLLSGLYPVEFRDFFMGDILCSLTYSISNVSMFFCIYAQHWNDCSNC
GSAKSRLLGFLQCVPSIWRFLQCFRRYADTGDWFPHLANMGKYTVSMMYYMSLSLYRIDTVNHYRALLIFWATTNSIYSI
VWDVVMDWSLFQLDSKYFLLRDEITFKEPMIYYAAIIADVVLRFQWVFYALFPKQIQQSAITSFGIAVAEVVRRFIWVFF
RMENEH
3629 PF02519
(Auxin_inducible)
 click to view
Estimated TM-score=0.56;
hard target.		 >Auxin responsive protein (Length=91)
KKWQRMAALGRKRLTMKAKENEECCTSVAGKGHCVMYTADGSRFEVPLAYLGTAVFSELLRMSQEEFGFTSDGRIMLPCD
AVVMDYAMCLL
3630 PF02049
(FliE)
 click to view
Estimated TM-score=0.56;
easy target.		 >Flagellar hook-basal body complex protein FliE (Length=85)
TNNTNTVTPHKTQSTFSNFLKDAINEVNETQINSDQLTEKLALGENVNLHDVMIASQKATITLQTTMEVRNKVVEAYQEI
MRMQV
3631 PF18868
(zf-C2H2_3rep)
 click to view
Estimated TM-score=0.55;
easy target.		 >Zinc finger C2H2-type, 3 repeats (Length=126)
CAICLDSFTNKKVLETHVQERHHVQFVEQCMLLQCIPCGSHFGNTEELWLHVLSVHPVNFRQSKAGQQHNLSAGEDSPLK
LELYNTAPMENNSENSGGFRKFICRFCGLKFDLLPDLGRHHQAAHM
3632 PF18813
(PBECR4)
 click to view
Estimated TM-score=0.55;
very hard target.		 >phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease4 (Length=172)
IIVHAAKEYEEKLNNKHFLIVYQKKSLTKTVEIGFRDMNFLHLTGVKTKLSAQQFYAACLESKLAERDFEIDNKGKVQQK
LMVLPCLSKLMSHHCLVGEFINSGVYIRADYFVGDTKAILSVGFRNGNRVDYPVTLYNEDVKRLSNPTNKVLAIFSKSYK
EKCYNKCTYLSK
3633 PF18803
(CxC2)
 click to view
Estimated TM-score=0.55;
very hard target.		 >CxC2 like cysteine cluster associated with KDZ transposases (Length=108)
LKSLGLRIQLGHAPGQTCPNPHRAFNDDFVIIDSHGVHEVSLDFCDCTQAETHVQQLLRMSLFPSTTADPKTAATFRLLE
EFHLLSFESKVSAYEFYNALTRRSDNTG
3634 PF18745
(SNAD2)
 click to view
Estimated TM-score=0.55;
hard target.		 >Secreted Novel AID/APOBEC-like Deaminase 2 (Length=204)
LYNIINFLRNNYGGDYQYALGINVPPRYCEQVAPLDPPDQNFLPSDNNAQRVKDDMAGDDKIYKGDQLIGARPKPIPHSQ
NNNYHSEYLLLINSTSSKLEPKPLMETLLDSNPDGCAVFFTRNSPCVRTCSTPNGLYSIIPALRSQFQNHKGLKAFVFNR
VWPRDENDPAWRNNIKTINDIIPVYRCDGNCTLCVNNNDVDRCC
3635 PF18730
(HEPN_Cthe2314)
 click to view
Estimated TM-score=0.55;
hard target.		 >Cthe_2314-like HEPN (Length=178)
WIRGLISSLDELEQSLFAASFFRKSVKAGYMDDMSVSEQGDYARYVYFYKNGFIRVFSLLDKLGTVLNTLYDLNTVRVKA
HFSYFTVLRRFRSTKKHRELSGRLDEIKESYRDPMQKLRNRRNAEIHYMNSEMQDDLWQRHQGLHDKIRLEDLDEHLEDL
RQGMEMVCKTLVEVFTYS
3636 PF18717
(CxC4)
 click to view
Estimated TM-score=0.55;
very hard target.		 >CxC4 like cysteine cluster associated with KDZ transposases (Length=137)
PLQQPPALIQLSEKASCPCLDGERAFFDPLQPTITCECKVYTLTEAFSVQIQLQQCPRCPQERHRYIGPEPRDIGLFNLN
NSAIFTHELLNEYTSAFSSSETPFEPWVQTIARRYEEMQPSIPFVGGGLFRSVWFAY
3637 PF18289
(HU-CCDC81_euk_2)
 click to view
Estimated TM-score=0.55;
easy target.		 >CCDC81 eukaryotic HU domain 2 (Length=72)
PIVPLNIVIVSLESSLRRDVVQDCLRETLLYLLGLIVEERPITFLFNEIGILRIQNEKVHMTFFKEFLKVMD
3638 PF18177
(La_HTH_kDCL)
 click to view
Estimated TM-score=0.55;
hard target.		 >La HTH in kinetoplastid DICER domain (Length=89)
VMRRLKKMLRFGSPYYEHFVRKGVWAHILCSDGWVPLQLIEEELAADTTTPVAKLPSKEKLKIVESLLCQHDNFQRFEVG
YCLLRRSPF
3639 PF18174
(HU-CCDC81_bac_1)
 click to view
Estimated TM-score=0.55;
easy target.		 >CCDC81-like prokaryotic HU domain 1 (Length=59)
MIELERHIEILLLSNDCVIVPGFGGFMAHHVDARYDEQENLFLPPQRTIGFNPQLTLND
3640 PF18160
(SLATT_5)
 click to view
Estimated TM-score=0.55;
hard target.		 >SMODS and SLOG-associating 2TM effector domain family 5 (Length=203)
DKTFLEELNHKIWCTKGTRFNADSRFKKKSKLSNISVSILSAYLIIASLFSVYNINQNSDDNIISYLVTALSILLLVVSM
HESNQDYKLRAFNFHSCGLELAEIYNRLRTFKTLEGEKSESEISESEISDFCFEINNKYQSILNKYDNHDDIDYDTFRIK
NLDYFEEVFTEKEIKKIERKLNLNIYAWHLSMIIITPIIIIAL
3641 PF18142
(SLATT_fungal)
 click to view
Estimated TM-score=0.55;
hard target.		 >SMODS and SLOG-associating 2TM effector domain (Length=123)
HAQKARDDFAKRAKLHGYTLNAAIGLQVLLGSLTTGLSAAATSGKSAAVQTTILGGLSTIVASYLARARGSNEPELSNLR
VKDLDQFIRDCQALSMDHGYDTTGRFDNDLRVKRERFEELLGN
3642 PF17733
(DUF5572)
 click to view
Estimated TM-score=0.55;
hard target.		 >Family of unknown function (DUF5572) (Length=48)
PYPTSFAHIVELITTGQPIPGIKEIPDTVLEGQGSASTASKRKKPWEK
3643 PF17570
(DUF5476)
 click to view
Estimated TM-score=0.55;
very hard target.		 >Family of unknown function (DUF5476) (Length=61)
MCFSPKVKVPKMDTNQVRAVEPAPLTQEVSGVEFGGSSDETDTEGTEVSGRKDLKVERDDS
3644 PF17507
(DUF5439)
 click to view
Estimated TM-score=0.55;
very hard target.		 >Family of unknown function (DUF5439) (Length=75)
MKYDVIVYWYIWKEFYQSRNKRLISHRNTKVNNLIIEDYSVTIVINWYSIIIIDKVLFIHDVMFICWHSSEIDVW
3645 PF17376
(DUF5398)
 click to view
Estimated TM-score=0.55;
easy target.		 >Family of unknown function (DUF5398) (Length=80)
MFGLEDQKKKKTSEEFVFELEKDLKNPKKNKEIRQQVEERIQKIKEALRSGENQEEFDRFGLLLHGYTSLLKVISRFNPK
3646 PF17342
(DUF5372)
 click to view
Estimated TM-score=0.55;
hard target.		 >Family of unknown function (DUF5372) (Length=78)
VTHRFHPLFGRDFEFVAHRQNWGEDRVHLHDENGELFSLPAGWTDIAPVDPFVVVADGRCAFTTDGLLAVADLIDRLR
3647 PF17338
(GP88)
 click to view
Estimated TM-score=0.55;
hard target.		 >Gene product 88 (Length=231)
LTQNSEMRQIGVWNWSLPAWAGRLPDGRTYNTCPSAGICAQACYARHGTYTWPVVRAKHQANLTYVLDDLAGWQAAMVAE
LSATKFRGAWIRIHDSGDFFSDSYLQAWLDICRARPDTNFYAYTKEVSRFRALVEPDPPPNFLWVYSYGGTQDAALNPAV
DRVADVFPDESAIAEAGWASQEASDLLAVLGPRLVGVPANRIPAYLKRLAGRRFSEWQAEVDAERAARRGR
3648 PF17249
(DUF5318)
 click to view
Estimated TM-score=0.55;
hard target.		 >Family of unknown function (DUF5318) (Length=130)
MSTQRQVVDYALQRRALLAEVYAGRVGTMEVCDASPYLLRAAKFHGRPSDVTCPVCRKEPLTHVSWVYGDELKHAAGSAR
TADELARMATLFEEFTVYVVEVCRTCSWNHLVQSYVLGTRGLNTRKPRRR
3649 PF17038
(CBP_BcsN)
 click to view
Estimated TM-score=0.55;
very hard target.		 >Cellulose biosynthesis protein BcsN (Length=185)
ALPPPGGPAVVSIVERRFSNSTQQDIFLFTSASTPGQNVLRVQMFGPVGLQMDGQKALGYSSVRASDIAKEMRRELPGVA
LAQSPLYLQNNYGPFSYAYGRGHGNDACLYAWQQIRSPDEARTVFQNRGTIQVRLRLCEDGASEEKLLGTMYGYTIRGAF
NAAGWNPYGEPPSVDPTLGRTGNPI
3650 PF17032
(zinc_ribbon_15)
 click to view
Estimated TM-score=0.55;
hard target.		 >zinc-ribbon family (Length=83)
RCINCNSKADLVKYDNVLKLFFVPVWKWPGKKPLLHCNTCNLFFPESLSKTTSSSLPSDNDVLRCHSCARLVDADYRFCP
FCG
3651 PF16998
(17kDa_Anti_2)
 click to view
Estimated TM-score=0.55;
hard target.		 >17 kDa outer membrane surface antigen (Length=114)
GGMDILSSAKVDRSVATGTIPTAPVTTDSVSDETTVRNAVTSADLHKLNGQPVPWANASTGSAGVIDTIVENSASGQVCR
QFRTTRHSYQGIANFSGRTCLLGQGEWQLLSFQQ
3652 PF16996
(Asp4)
 click to view
Estimated TM-score=0.55;
hard target.		 >Accessory secretory protein Sec Asp4 (Length=55)
KKDLFYKEVEGRMESLKRRPAEKEKTTRSEKINVTFNVIIGLVILLGVIFTLFRV
3653 PF16995
(tRNA-synt_2_TM)
 click to view
Estimated TM-score=0.55;
hard target.		 >Transmembrane region of lysyl-tRNA synthetase (Length=210)
RLHQVPHIAGLILGVFSVLVFLWSISPVLRYYVHVPREYVDTYYFDAPDTSLSWALVVALLAAALASRKRIAWWLLTIYL
VLFLITNVIVSITDKNVNAMVAAVVQVVLIGILIAARPEFYTRVRRGAGWKALGVLIVGLAIGTLLGWGLVELFPGTLPQ
NERFLWALNRVTALAAADNEQFTGRPHGFVNTLLGLFGAIALLAAVITLF
3654 PF16977
(ApeC)
 click to view
Estimated TM-score=0.55;
hard target.		 >C-terminal domain of apextrin (Length=207)
WPAGSYALPMANSGCPNSSGFTWHTGHRTEELENDGNRNAHSTSIHLKAKVGKPDITQHFCVKNSTATDKGKPKWPNGKY
CIYKEGAFCPQEFYEGFVRWDDNNEKNGSNRNNKEGKLPAGVYNQDTLIYFCCKTTGSAIKRIALPVIKPFYLMAFGSTT
CQEVQGAVYSLEYVVFDTENTDNMDNRVYPFPYGADRKEPTIHYCYY
3655 PF16945
(Phage_r1t_holin)
 click to view
Estimated TM-score=0.55;
hard target.		 >Putative lactococcus lactis phage r1t holin (Length=70)
GNFLIDLADRVGRTFVGALVGAIPATGTLADIDWQAALSIAATTAIVSAITSILSINLGTAKGLPSLAPV
3656 PF16722
(SAPIS-gp6)
 click to view
Estimated TM-score=0.55;
trivial target.		 >Pathogenicity island protein gp6 in Staphylococcus (Length=72)
METKYELNNTKKVANAFGLNEEDTNLLINAVDLDIKNNMQEISSELQQSEQSKQKQYGTTLQNLAKQNRIIK
3657 PF16665
(NCOA_u2)
 click to view
Estimated TM-score=0.55;
very hard target.		 >Unstructured region on nuclear receptor coactivator protein (Length=113)
YGLNMNSPPHGSPGLGSNQQNIMISPRNRGSPKMPSHQFSPVAGMHSPMGSASNTGGNSFSSSSLSALQAISEGVGTSLL
STLSSPGPKLDNSPNMNINQQSKIGSQDSKSPA
3658 PF16447
(DUF5044)
 click to view
Estimated TM-score=0.55;
very hard target.		 >Domain of unknown function (DUF5044) (Length=179)
PFLTARGALAATQERYAFGPGEVIARFSPQQEGMPPLRYYIVRDGDWFAWCSVEGDGLFWRPGALTAACPDGEAPLAILA
SPTFGGTSPELVVVSSDPDIAAVELDYLVKSAIIDTVVYVHVEMARQEPLEDSCFYFSLEDAYSRLFYETPSTVFRVRYY
DADGKLLYESPYPARWLEY
3659 PF16434
(DUF5031)
 click to view
Estimated TM-score=0.55;
hard target.		 >Domain of unknown function (DUF5031) (Length=362)
MKTIQYISRISILLIVGSIASSCVKEEVVTPIPALAPEGMPVAINFKDPKPSLADLKYSLYLFSHAKGSSDTYIMEELKN
PLQNDSRLKFRNSELREKDYRFLFVATPGTTPEIQVYKNTLNNPPATGDNWEDIRIGILSPKLSLHNYYQVKDISGDELL
ANDSVRGELSRMVGQMEFRFFKIGNDITNPIPIDLTGIYSIFDRIYKIDITYTGYTTSLSFGEGNILQPETSNNEEFKQE
INVALNDRFGIEIPNGQLDTLAGGATAGGKFKGYCFLPANNNVRAVLKIYYYDTTPTCDNLIVPHTANCYEQRQLELRIP
AEATAGLPIEANTYTVNSAGIRCNRIIDIHVDHNTNIFTQWD
3660 PF16424
(DUF5021)
 click to view
Estimated TM-score=0.55;
very hard target.		 >Domain of unknown function (DUF5021) (Length=178)
VTSANSTAASIKKQIDNFLTDADTAGYGMKQSSAAKANITFKINADGEWEASVVTGTYTGGAAGGALTDAFKTGGSIQWG
ASAADITKDTPKSSAGDATALLTIDLASVFPDVKSSYIYAYCEGGKTLYVAYTADGNTKPTSMPGEADFKKGTYTWDGNT
AGITSDGITLGTAPALSL
3661 PF16334
(DUF4964)
 click to view
Estimated TM-score=0.55;
very hard target.		 >Domain of unknown function (DUF4964) (Length=81)
VFCSCETQVEQHEKNELRAPAYPLVTIDPYTSAWSTTDNLYDSPVKHWTGKDFPLLGVAKVDGQTYRFMGTEELELRPLV
K
3662 PF16266
(DUF4919)
 click to view
Estimated TM-score=0.55;
hard target.		 >Domain of unknown function (DUF4919) (Length=183)
IESSIRDFNSEMYYPRLMRRYINNDTTLTLNEFRHLYLGYSFQESYNPYRISPHIEKLANLYARYEHSTTECDSIIKYAT
LAVDDFPFDLRQINMLIYAYKQKKMKDIAAIWEYKLKNIVNAILSTGNGEKPETAWYVIYPTHEYDVVNRMGFTGAKYTF
IEPTFDYLEVEKNPLNVKGYYFN
3663 PF16110
(DUF4828)
 click to view
Estimated TM-score=0.55;
hard target.		 >Domain of unknown function (DUF4828) (Length=78)
FYAGTWQFVDPHNQRHHRLEISPNLDVHIDGRSLEVRVQELNEHQLTFQDKFGYHLVIHANEQQPISFFDEADDCTYT
3664 PF16097
(FXR_C3)
 click to view
Estimated TM-score=0.55;
very hard target.		 >Fragile X-related 1 protein C-terminal region 3 (Length=69)
PKDNLKKNKKEMGQVDLIEEHSTLEKMINGPSNGSGDELGKFQCTPTERTQKVTYQGDGNNQETVLNGV
3665 PF15940
(YjcB)
 click to view
Estimated TM-score=0.55;
hard target.		 >Family of unknown function (Length=92)
MGTLTASLVLMRWELVSAVMMFIASTFNVKCRQASHKGIAFVFTGVGIGMSCWFVTGLLGITLSMDNLHNFWHITKDVFI
DVMSHTPTDYPM
3666 PF15884
(QIL1)
 click to view
Estimated TM-score=0.55;
hard target.		 >MICOS complex subunit MIC13, QIL1 (Length=76)
TIDKGIWKDSATTSAFYEELESGVSPYVGELKKQIPYELPPLPSNDRLSYLMKYYWNCGVKTTFNFLVDLPTHTSN
3667 PF15805
(SCNM1_acidic)
 click to view
Estimated TM-score=0.55;
hard target.		 >Acidic C-terminal region of sodium channel modifier 1 SCNM1 (Length=46)
PEKRRTLEHYLKLKSSGWIQDGSGKWVKDENVEFDSDEEEPPMLPP
3668 PF15674
(CCDC23)
 click to view
Estimated TM-score=0.55;
easy target.		 >Coiled-coil domain-containing protein 23 (Length=63)
PARKEKSKVKEPAFRVEKAKQKSAQQELKQRQRAEIYALNRVMTELEQQQFDEFCKQMQPPGE
3669 PF15657
(Tox-HNH-EHHH)
 click to view
Estimated TM-score=0.55;
very hard target.		 >HNH/Endo VII superfamily nuclease toxins (Length=69)
VLGENGRPVMTREYTYVRPDGSKVIIQDHSAGHRFGEGGIGDRGPHFNVRPPENTRSGHVPGTDDHYPF
3670 PF15652
(Tox-SHH)
 click to view
Estimated TM-score=0.55;
hard target.		 >HNH/Endo VII superfamily toxin with a SHH signature (Length=102)
NSPLENHHGVMDVWAKHNVPNYVSRGSNTPTVALTKEQHNATKKVYREWLFEKTGKKVGGKVNWKEVSPREIQELTEKMF
DAANVPKEARQQYYNAFNQYNF
3671 PF15647
(Tox-REase-3)
 click to view
Estimated TM-score=0.55;
hard target.		 >Restriction endonuclease fold toxin 3 (Length=106)
QNAKYREALDIHYEDLIRRKTDGSSKFINGREIDAVTNDALIQAKRTISAIDKPKNFLNQKNRKQIKATIEAANQQGKRA
EFWFKYGVHSQVKSYIESKGGIVKTG
3672 PF15640
(Tox-MPTase4)
 click to view
Estimated TM-score=0.55;
hard target.		 >Metallopeptidase toxin 4 (Length=132)
EEMPVSGQRRLTSTGHRIMDISEMKSFKKEMGAIDIKVLIDKKDKILPENAAAGFNPATGEIVLRKEPTNLSAIHESYHA
KQWKELGKDNYLQQSTLEREEFVYNEIMKNKVLFNDGEILFSQKYIYKLRNG
3673 PF15606
(Ntox34)
 click to view
Estimated TM-score=0.55;
hard target.		 >Bacterial toxin 34 (Length=75)
PGLALDITMIASRGNVADTGITDRVNDIINDRFWSDGKKPDRCDVLQELIDCGDISAKDAKSTQKAWNCRHSRQS
3674 PF15574
(Imm48)
 click to view
Estimated TM-score=0.55;
hard target.		 >Immunity protein 48 (Length=123)
YVSESLRIANDIIQLVKIDLKDEMNRQILASYIFGVLNAKAIQESISPIDVQVTMIRVGIEALGYSPEAATQMTQFVIDA
TDKNFHPTVYAIIHRGIEAFYLYSNEKYEQLKEDFDNIMASIK
3675 PF15536
(Ntox3)
 click to view
Estimated TM-score=0.55;
hard target.		 >Bacterial toxin 3 (Length=132)
RAGIAVPGAEARYERQEPTATAQQRARIEASPDVRVAVPGTRITYTLVRDAELHAQGAHYQYQWYFLNDPETSQTLGHPA
RVEASEGPRVDARARFVGDHKIICKEVYHPADGDPQAPVFYEVPLRVVSEGD
3676 PF15529
(Ntox24)
 click to view
Estimated TM-score=0.55;
hard target.		 >Bacterial toxin 24 (Length=94)
KGTGGRAGNNLPVENGPKDGTLYKTDPQTGKVTNYTTYDSEGRAVKRVDLEGRPHGGVDTPHVVEYERNTNPKTGQVFVR
PSNEVRAAFPWEIP
3677 PF15506
(OCC1)
 click to view
Estimated TM-score=0.55;
very hard target.		 >OCC1 family (Length=60)
MGCGNSTSASTAAGPSESAIDVQDDSSMDDEKRRNYGGVYVGLPADLSNVATGQTPSTQK
3678 PF15451
(DUF4632)
 click to view
Estimated TM-score=0.55;
very hard target.		 >Domain of unknown function (DUF4632) (Length=71)
AGNPAKESSDADGEAEEEGESEKGAGPRSAGWRALRRLWDRVLAPARRWRRPLPSNVLYCPEIKDIAHLTR
3679 PF15386
(Tantalus)
 click to view
Estimated TM-score=0.55;
very hard target.		 >Drosophila Tantalus-like (Length=58)
LTPMGLPRPKRLKKKEFSLEEIYTNKNYKSPPANRCLETIFEEPKERNGTLISVSQQK
3680 PF15165
(REC114-like)
 click to view
Estimated TM-score=0.55;
easy target.		 >Meiotic recombination protein REC114-like (Length=241)
WPLQRYARCIPSNTRDPPGPCLEAGTAPCPTWKVFDSNEESGYLVLTIVISGHFFIFQGQTLLEGFSLIGSKDWLKIVRR
VDCLLFGTTIKDKSRLFRVQFSGESKEQALEHCCSCVQKLAQYITVQVPDGNIQELQLIPGPPRATESQGKDSAKSVPRQ
PGSHQHSEQQQVCVTAGTGAPDGRTSLTQLAQTLLASEELPHVYEQSAWGAEELGPFLRLCLMDQNFPAFVEEVEKELKK
L
3681 PF15159
(PIG-Y)
 click to view
Estimated TM-score=0.55;
hard target.		 >Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y (Length=69)
GWFLLFAAYFIFVFSMYAIVVSKFVPETGNKTLDWIKKDEYYCLLVPLTLPVTIYAVFFNWLGMKFFRH
3682 PF15022
(DUF4522)
 click to view
Estimated TM-score=0.55;
very hard target.		 >Protein of unknown function (DUF4522) (Length=117)
MAYGLPRKNTVKTILRGSCYNVQEPWDLALLTETWYTNLANIKLPFLGEISFGSPLHLKKTKTIKNALLPSAESMKLERE
YEMKRLNRLKCQENVAEEIQLSLRERQVGLRRPLPPK
3683 PF14998
(Ripply)
 click to view
Estimated TM-score=0.55;
hard target.		 >Transcription Regulator (Length=84)
FWRPWIATPKDAERERGQNHSALCSLPEITENSAKLTQYTHPVRLFWPKSKCFDYLYQEAEALLRNFPVQATISFYEDSE
SEEE
3684 PF14980
(TIP39)
 click to view
Estimated TM-score=0.55;
hard target.		 >TIP39 peptide (Length=50)
DWPSRVGHQQKRNIVVADDAAFREKSKLLTAMERQKWLNSYMQKLLVVNS
3685 PF14974
(P_C10)
 click to view
Estimated TM-score=0.55;
hard target.		 >Protein C10 (Length=103)
FTLETAKAILTDILTALNTPENLQKLAEAKENSGNEMLKMMQFVFPLVTQIQMDVIKNYGFPEGREGTVQFAQLIRTLER
EDAEVAQLHSQVRSYFLPPVRIN
3686 PF14908
(HU-CCDC81_euk_1)
 click to view
Estimated TM-score=0.55;
easy target.		 >CCDC81 eukaryotic HU domain 1 (Length=85)
IEENCKLFYPTLKNLHVDEITNIWDKVSEFVHHNLCMNKGVQIPGLGIFSFARIKLDLSGNKFLVTQKPVFLLSEKLCQA
YRLKQ
3687 PF14797
(SEEEED)
 click to view
Estimated TM-score=0.55;
very hard target.		 >Serine-rich region of AP3B1, clathrin-adaptor complex (Length=130)
AKKFYSESEEEEDSSDSSSDSESESGSESGEQGESGEEGDSNEDSSEDSSSEQDSESGRESGLENKRTAKRNSKAKGKSD
SEDGEKENEKSKTSDSSNAESSSIEDSSSDSESESESESESESRKVTQEK
3688 PF14736
(N_Asn_amidohyd)
 click to view
Estimated TM-score=0.55;
hard target.		 >Protein N-terminal asparagine amidohydrolase (Length=265)
VEVDPKRLLYVQQREFAATTPADDCVSVIGSDDATTCHLVVLRHTGSGAVCLAHCDGSSTWSEIQLITKAVTSLSNVRDD
GRFELHLVGGFNDDAKTSQKLSLSILAAFQKLEEEIHLETCCITEMNDAVVNGIHRPTVYGIGVNVKTGEVFPASFPHKG
PAEELRSARTFTGGEMAGIYDSSRGLVEIGPCHWTSDMDIAFWLSQSDDTILKYLSTSPEAEPPHFVQHMKSTIQFLLSH
PDSDSLFPGGQPQLYRRSESGAWER
3689 PF14545
(DBB)
 click to view
Estimated TM-score=0.55;
hard target.		 >Dof, BCAP, and BANK (DBB) motif, (Length=139)
VVQPDRIRCGAETTVYVIVRCKLDEKVSTEVEFSPEDSPSVRMEGTLENEYTVSVKAPDLSSGNVSLKVYSGDLVVCETT
ISYYTDMEEIGNLLSSAANPVEFMCQAFKIVPYNTETLDKLLTESLKNNIPASGLHLFG
3690 PF14342
(DUF4396)
 click to view
Estimated TM-score=0.55;
hard target.		 >Domain of unknown function (DUF4396) (Length=143)
WQSVGVGASHCGSGCTLGDIIAEWFVFFVPIVIFGSHVVGTWVLDYIVAFVFGIAFQYFTIKPMRELSVGEGLKAAVKAD
TLSLTAWQIGMYGWMAISFFLLFSPETLRPNNPVFWFMMQIGMVCGFLTSYPVNWWLLSKKIK
3691 PF14250
(AbrB-like)
 click to view
Estimated TM-score=0.55;
easy target.		 >AbrB-like transcriptional regulator (Length=69)
KFYNALIEAEGVELDSNTSAQGRGGRAATYRISVQSNGNLLIGSAYTKKMNLKPGDEFEISLGRKHIHL
3692 PF14184
(YrvL)
 click to view
Estimated TM-score=0.55;
hard target.		 >Regulatory protein YrvL (Length=126)
EKMKTFIICGMIFMGMLSIIALVCGAIMRFLGFQYESAGSIVLFFTIATVISYPLNLVAGALPKALYELKRISKLCALVL
YLILDTTATSLGLTAVDNCMSSVSATTISIVIISFLLALPGKDDFK
3693 PF14178
(YppF)
 click to view
Estimated TM-score=0.55;
easy target.		 >YppF-like protein (Length=59)
MNMAELKNKFIAVKDYEPTDMNELLCFARQMYLRGEITIAQYRDLVRELELAGAYKPDN
3694 PF14164
(YqzH)
 click to view
Estimated TM-score=0.55;
hard target.		 >YqzH-like protein (Length=64)
MDERWLQKQVRNCLRHYGYDDDMMPLGEDDWRELCTRIAAAKERQPNADIYELVHDIVYRFITS
3695 PF14133
(DUF4300)
 click to view
Estimated TM-score=0.55;
hard target.		 >Domain of unknown function (DUF4300) (Length=252)
TYSNLVDSLSQDEVKKAMESAGITSENIDLFFQSVNDFNTTIEKKSLVKDGFITVDNLKPEYDEVAIQEIWNAKNPKFIG
YNCRITSFALMKDLISIGNPNTKNSNNLFMDEDALENSPKKLFNPVEQKYFESLFSFVPTENTKDISIHLNKVKEDWKSK
DITFSNKKKASLISVFFHSHEDSYLFIGHAGVLIPTKDGKLLFIEKLSFNEPYQVIKFDNRIELNDYLMNKYDVSWNQPN
AKPFIMENDQLL
3696 PF14123
(DUF4290)
 click to view
Estimated TM-score=0.55;
hard target.		 >Domain of unknown function (DUF4290) (Length=173)
MDYNTNEKRLVLPEYGRNIQNMVDYCLTIQDREERKKCANTIINIMGNMFPHLRDVNDFKHILWDHLAIMADFKLDIDYP
YEIIEKENLHTRPPRIPYNSSRIRYRHYGRTLEMMIQKAVELEDGEERDALIRLLANHMKKSFMAWNKESVDDRKILSDL
AELSEGKITLNEE
3697 PF14030
(DUF4245)
 click to view
Estimated TM-score=0.55;
hard target.		 >Protein of unknown function (DUF4245) (Length=165)
RGTQTVRDMFLSMAVIGLVVAGIYMFIPHDDKADPVKAVDYRVELATARRAAPYPVVAPAGLADTWKPTSVSYKRQSADA
WHLGYLAPDGQYVAVEQSTAPPAKYVSDVTQRAEDTGRTQQVAGETWQRWKGPKYDALVRADGDATTVVTGTASYERLAE
MAAAL
3698 PF14029
(DUF4244)
 click to view
Estimated TM-score=0.55;
hard target.		 >Protein of unknown function (DUF4244) (Length=50)
RRMRSDAGMTTSEYAVGTIAACAFAAVLYKVVTSGTVQGALQSLIERALS
3699 PF13952
(DUF4216)
 click to view
Estimated TM-score=0.55;
hard target.		 >Domain of unknown function (DUF4216) (Length=77)
LEIQYMNNKSVMLFQCDWFEVPPQGRSQSRGYKKDEYGFVCVDITRLHYTSDPFILGSQAQSVYYVKHGQSEKWHSV
3700 PF13906
(AA_permease_C)
 click to view
Estimated TM-score=0.55;
easy target.		 >C-terminus of AA_permease (Length=51)
FKVPLVPLLPLISVFFNLYLMFQLDTGTWIRFSVWIAVGYFIYFSYGIRHS

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