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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1001 1aed:A (2.1) BS02 DTI 1.11.1.5 GO:0004601 ... P00431 11812152
    1002 1aee:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 11812152
    1003 1aee:A (2.1) BS02 ANL 1.11.1.5 GO:0004601 ... P00431 11812152
    1004 1aef:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 11812152
    1005 1aef:A (2.1) BS02 3AP 1.11.1.5 GO:0004601 ... P00431 11812152
    1006 1aeg:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 11812152
    1007 1aeg:A (2.1) BS02 4AP 1.11.1.5 GO:0004601 ... P00431 11812152
    1008 1aeh:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 11812152
    1009 1aeh:A (2.1) BS02 24T 1.11.1.5 GO:0004601 ... P00431 11812152
    1010 1aei:A (2.8) BS01 CA ? GO:0005509 ... P26256 7477411
    1011 1aei:A (2.8) BS02 CA ? GO:0005509 ... P26256 7477411
    1012 1aei:A (2.8) BS03 CA ? GO:0005509 ... P26256 7477411
    1013 1aei:A (2.8) BS04 CA ? GO:0005509 ... P26256 7477411
    1014 1aei:B (2.8) BS01 CA ? GO:0005509 ... P26256 7477411
    1015 1aei:B (2.8) BS02 CA ? GO:0005509 ... P26256 7477411
    1016 1aei:B (2.8) BS03 CA ? GO:0005509 ... P26256 7477411
    1017 1aei:B (2.8) BS04 CA ? GO:0005509 ... P26256 7477411
    1018 1aei:C (2.8) BS01 CA ? GO:0005509 ... P26256 7477411
    1019 1aei:C (2.8) BS02 CA ? GO:0005509 ... P26256 7477411
    1020 1aei:C (2.8) BS03 CA ? GO:0005509 ... P26256 7477411
    1021 1aei:C (2.8) BS04 CA ? GO:0005509 ... P26256 7477411
    1022 1aei:D (2.8) BS01 CA ? GO:0005509 ... P26256 7477411
    1023 1aei:D (2.8) BS02 CA ? GO:0005509 ... P26256 7477411
    1024 1aei:D (2.8) BS03 CA ? GO:0005509 ... P26256 7477411
    1025 1aei:D (2.8) BS04 CA ? GO:0005509 ... P26256 7477411
    1026 1aei:E (2.8) BS01 CA ? GO:0005509 ... P26256 7477411
    1027 1aei:E (2.8) BS02 CA ? GO:0005509 ... P26256 7477411
    1028 1aei:E (2.8) BS03 CA ? GO:0005509 ... P26256 7477411
    1029 1aei:E (2.8) BS04 CA ? GO:0005509 ... P26256 7477411
    1030 1aei:F (2.8) BS01 CA ? GO:0005509 ... P26256 7477411
    1031 1aei:F (2.8) BS02 CA ? GO:0005509 ... P26256 7477411
    1032 1aei:F (2.8) BS03 CA ? GO:0005509 ... P26256 7477411
    1033 1aei:F (2.8) BS04 CA ? GO:0005509 ... P26256 7477411
    1034 1aej:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 11812152
    1035 1aej:A (2.1) BS02 NVI 1.11.1.5 GO:0004601 ... P00431 11812152
    1036 1aek:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 11812152
    1037 1aek:A (2.1) BS02 IDM 1.11.1.5 GO:0004601 ... P00431 11812152
    1038 1aem:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 11812152
    1039 1aem:A (2.1) BS02 MPI 1.11.1.5 GO:0004601 ... P00431 11812152
    1040 1aen:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 11812152
    1041 1aen:A (2.1) BS02 25T 1.11.1.5 GO:0004601 ... P00431 11812152
    1042 1aeo:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 11812152
    1043 1aeo:A (2.1) BS02 2AP 1.11.1.5 GO:0004601 ... P00431 11812152
    1044 1aeq:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 11812152
    1045 1aeq:A (2.1) BS02 2EZ 1.11.1.5 GO:0004601 ... P00431 11812152
    1046 1aer:A (2.3) BS01 TAD 2.4.2.36 GO:0047286 ... P11439 8692916
    1047 1aer:B (2.3) BS01 TIA 2.4.2.36 GO:0047286 ... P11439 8692916
    1048 1aer:B (2.3) BS02 AMP 2.4.2.36 GO:0047286 ... P11439 8692916
    1049 1aes:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 8673607
    1050 1aes:A (2.1) BS02 IMD 1.11.1.5 GO:0004601 ... P00431 8673607
    1051 1aet:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 8673607
    1052 1aet:A (2.1) BS02 1MZ 1.11.1.5 GO:0004601 ... P00431 8673607
    1053 1aeu:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 8673607
    1054 1aeu:A (2.1) BS02 2MZ 1.11.1.5 GO:0004601 ... P00431 8673607
    1055 1aev:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 9305956
    1056 1aev:A (2.1) BS02 AMT 1.11.1.5 GO:0004601 ... P00431 9305956
    1057 1aex:A (2.1) BS01 CA 3.1.31.1 GO:0003676 ... P00644 8762134
    1058 1aex:A (2.1) BS02 THP 3.1.31.1 GO:0003676 ... P00644 8762134
    1059 1af0:A (1.8) BS01 ZN 3.4.24.40 GO:0001907 ... P23694 N/A
    1060 1af0:A (1.8) BS02 CA 3.4.24.40 GO:0001907 ... P23694 N/A
    1061 1af0:A (1.8) BS03 CA 3.4.24.40 GO:0001907 ... P23694 N/A
    1062 1af0:A (1.8) BS04 CA 3.4.24.40 GO:0001907 ... P23694 N/A
    1063 1af0:A (1.8) BS05 CA 3.4.24.40 GO:0001907 ... P23694 N/A
    1064 1af0:A (1.8) BS06 CA 3.4.24.40 GO:0001907 ... P23694 N/A
    1065 1af0:A (1.8) BS07 CA 3.4.24.40 GO:0001907 ... P23694 N/A
    1066 1af0:A (1.8) BS08 CA 3.4.24.40 GO:0001907 ... P23694 N/A
    1067 1af0:A (1.8) BS09 0Z9 3.4.24.40 GO:0001907 ... P23694 N/A
    1068 1af2:A (2.3) BS01 ZN 3.5.4.5 GO:0001884 ... P0ABF6 9125497
    1069 1af2:A (2.3) BS02 U 3.5.4.5 GO:0001884 ... P0ABF6 9125497 PDBbind: -logKd/Ki=3.10, Ki=0.8mM
    1070 1af4:A (2.6) BS01 CA 3.4.21.62 GO:0004252 ... P00780 9113975
    1071 1af6:A (2.4) BS01 GLC ? GO:0001618 ... P02943 9299337 PDBbind: -logKd/Ki=1.82, Kd=15mM
    1072 1af6:A (2.4) BS02 FRU ? GO:0001618 ... P02943 9299337
    1073 1af6:B (2.4) BS01 GLC ? GO:0001618 ... P02943 9299337 PDBbind: -logKd/Ki=1.82, Kd=15mM
    1074 1af6:B (2.4) BS02 FRU ? GO:0001618 ... P02943 9299337
    1075 1af6:C (2.4) BS01 GLC ? GO:0001618 ... P02943 9299337
    1076 1af6:C (2.4) BS02 FRU ? GO:0001618 ... P02943 9299337
    1077 1af7:A (2.0) BS01 SAH 2.1.1.80 GO:0006935 ... P07801 9115443
    1078 1afa:1 (2.0) BS01 MBG ? N/A P19999 8636086
    1079 1afa:1 (2.0) BS02 CA ? N/A P19999 8636086
    1080 1afa:1 (2.0) BS03 CA ? N/A P19999 8636086
    1081 1afa:2 (2.0) BS01 MBG ? N/A P19999 8636086
    1082 1afa:2 (2.0) BS02 CA ? N/A P19999 8636086
    1083 1afa:2 (2.0) BS03 CA ? N/A P19999 8636086
    1084 1afa:2 (2.0) BS04 CA ? N/A P19999 8636086
    1085 1afa:3 (2.0) BS01 MBG ? N/A P19999 8636086
    1086 1afa:3 (2.0) BS02 CA ? N/A P19999 8636086
    1087 1afa:3 (2.0) BS03 CA ? N/A P19999 8636086
    1088 1afb:1 (1.9) BS01 CA ? N/A P19999 8636086
    1089 1afb:1 (1.9) BS02 CA ? N/A P19999 8636086
    1090 1afb:2 (1.9) BS01 CA ? N/A P19999 8636086
    1091 1afb:2 (1.9) BS02 CA ? N/A P19999 8636086
    1092 1afb:2 (1.9) BS03 CA ? N/A P19999 8636086
    1093 1afb:3 (1.9) BS01 CA ? N/A P19999 8636086
    1094 1afb:3 (1.9) BS02 CA ? N/A P19999 8636086
    1095 1afc:A (2.7) BS01 GU4 ? GO:0001525 ... P03968 7520817
    1096 1afc:A (2.7) BS02 YYJ ? GO:0001525 ... P03968 7520817
    1097 1afc:B (2.7) BS01 GU4 ? GO:0001525 ... P03968 7520817
    1098 1afc:B (2.7) BS02 YYJ ? GO:0001525 ... P03968 7520817
    1099 1afc:C (2.7) BS01 GU4 ? GO:0001525 ... P03968 7520817
    1100 1afc:C (2.7) BS02 YYJ ? GO:0001525 ... P03968 7520817
    1101 1afc:D (2.7) BS01 GU4 ? GO:0001525 ... P03968 7520817
    1102 1afc:D (2.7) BS02 YYJ ? GO:0001525 ... P03968 7520817
    1103 1afc:E (2.7) BS01 GU4 ? GO:0001525 ... P03968 7520817
    1104 1afc:E (2.7) BS02 YYJ ? GO:0001525 ... P03968 7520817
    1105 1afc:F (2.7) BS01 GU4 ? GO:0001525 ... P03968 7520817
    1106 1afc:F (2.7) BS02 YYJ ? GO:0001525 ... P03968 7520817
    1107 1afc:G (2.7) BS01 GU4 ? GO:0001525 ... P03968 7520817
    1108 1afc:G (2.7) BS02 YYJ ? GO:0001525 ... P03968 7520817
    1109 1afc:H (2.7) BS01 GU4 ? GO:0001525 ... P03968 7520817
    1110 1afc:H (2.7) BS02 YYJ ? GO:0001525 ... P03968 7520817
    1111 1afd:1 (2.0) BS01 CA ? N/A P19999 8636086
    1112 1afd:1 (2.0) BS02 CA ? N/A P19999 8636086
    1113 1afd:2 (2.0) BS01 CA ? N/A P19999 8636086
    1114 1afd:2 (2.0) BS02 CA ? N/A P19999 8636086
    1115 1afd:3 (2.0) BS01 CA ? N/A P19999 8636086
    1116 1afd:3 (2.0) BS02 CA ? N/A P19999 8636086
    1117 1afe:H (2.0) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 9217260
    1118 1afe:H (2.0) BS02 ALZ 3.4.21.5 GO:0004252 ... P00734 9217260
    1119 1afj:A (-1.00) BS01 HG ? GO:0015097 ... P04129 9188683
    1120 1afk:A (1.7) BS01 PAP 4.6.1.18 GO:0003676 ... P61823 9154942 MOAD: Ki=240nM
    PDBbind: -logKd/Ki=6.62, Ki=240nM
    1121 1afk:B (1.7) BS01 PAP 4.6.1.18 GO:0003676 ... P61823 9154942 MOAD: Ki=240nM
    1122 1afl:A (1.7) BS01 ATR 4.6.1.18 GO:0003676 ... P61823 9154942 MOAD: Ki=520nM
    PDBbind: -logKd/Ki=6.28, Ki=520nM
    1123 1afl:B (1.7) BS01 ATR 4.6.1.18 GO:0003676 ... P61823 9154942 MOAD: Ki=520nM
    1124 1afq:B (1.8) BS01 peptide 3.4.21.1 GO:0004252 ... P00766 9692896
    1125 1afq:B (1.8) BS02 0FG 3.4.21.1 GO:0004252 ... P00766 9692896
    1126 1afq:B (1.8) BS03 0FG 3.4.21.1 GO:0004252 ... P00766 9692896
    1127 1afq:C (1.8) BS01 peptide 3.4.21.1 GO:0004252 ... P00766 9692896
    1128 1afq:C (1.8) BS02 0FG 3.4.21.1 GO:0004252 ... P00766 9692896
    1129 1afr:A (2.4) BS01 FE2 1.14.19.2 GO:0006631 ... P22337 8861937
    1130 1afr:A (2.4) BS02 FE2 1.14.19.2 GO:0006631 ... P22337 8861937
    1131 1afr:B (2.4) BS01 FE2 1.14.19.2 GO:0006631 ... P22337 8861937
    1132 1afr:B (2.4) BS02 FE2 1.14.19.2 GO:0006631 ... P22337 8861937
    1133 1afr:C (2.4) BS01 FE2 1.14.19.2 GO:0006631 ... P22337 8861937
    1134 1afr:C (2.4) BS02 FE2 1.14.19.2 GO:0006631 ... P22337 8861937
    1135 1afr:D (2.4) BS01 FE2 1.14.19.2 GO:0006631 ... P22337 8861937
    1136 1afr:D (2.4) BS02 FE2 1.14.19.2 GO:0006631 ... P22337 8861937
    1137 1afr:E (2.4) BS01 FE2 1.14.19.2 GO:0006631 ... P22337 8861937
    1138 1afr:E (2.4) BS02 FE2 1.14.19.2 GO:0006631 ... P22337 8861937
    1139 1afr:F (2.4) BS01 FE2 1.14.19.2 GO:0006631 ... P22337 8861937
    1140 1afr:F (2.4) BS02 FE2 1.14.19.2 GO:0006631 ... P22337 8861937
    1141 1afs:A (2.5) BS01 NAP 1.1.1.50 GO:0004032 ... P23457 9261071
    1142 1afs:A (2.5) BS02 TES 1.1.1.50 GO:0004032 ... P23457 9261071
    1143 1afs:B (2.5) BS01 NAP 1.1.1.50 GO:0004032 ... P23457 9261071
    1144 1afs:B (2.5) BS02 TES 1.1.1.50 GO:0004032 ... P23457 9261071
    1145 1ag0:A (2.4) BS01 CU ? GO:0005507 ... P00282 N/A
    1146 1ag0:B (2.4) BS01 CU ? GO:0005507 ... P00282 N/A
    1147 1ag1:T (2.36) BS01 PO4 5.3.1.1 GO:0004807 ... P04789 2040290
    1148 1ag6:A (1.6) BS01 CU ? GO:0005507 ... P00289 9792096
    1149 1ag9:A (1.8) BS01 CA ? GO:0000166 ... P61949 9416602
    1150 1ag9:A (1.8) BS02 FMN ? GO:0000166 ... P61949 9416602 MOAD: Kd=1nM
    PDBbind: -logKd/Ki=9.00, Kd=1nM
    1151 1ag9:A (1.8) BS03 BTB ? GO:0000166 ... P61949 9416602
    1152 1ag9:B (1.8) BS01 CA ? GO:0000166 ... P61949 9416602
    1153 1ag9:B (1.8) BS02 FMN ? GO:0000166 ... P61949 9416602 MOAD: Kd=1nM
    PDBbind: -logKd/Ki=9.00, Kd=1nM
    1154 1ag9:B (1.8) BS03 BTB ? GO:0000166 ... P61949 9416602
    1155 1agb:A (2.2) BS01 peptide ? N/A P01889 8976183
    1156 1agc:A (2.1) BS01 peptide ? N/A P01889 8976183
    1157 1agd:A (2.05) BS01 peptide ? N/A P01889 8976183
    1158 1age:A (2.3) BS01 peptide ? N/A P01889 8976183
    1159 1agf:A (2.2) BS01 peptide ? N/A P01889 8976183
    1160 1agm:A (2.3) BS01 MAN 3.2.1.3 GO:0004339 ... P69327 8195212
    1161 1agm:A (2.3) BS02 MAN 3.2.1.3 GO:0004339 ... P69327 8195212
    1162 1agm:A (2.3) BS03 MAN 3.2.1.3 GO:0004339 ... P69327 8195212
    1163 1agm:A (2.3) BS04 GLC 3.2.1.3 GO:0004339 ... P69327 8195212
    1164 1agm:A (2.3) BS05 AC1 3.2.1.3 GO:0004339 ... P69327 8195212
    1165 1agm:A (2.3) BS06 GLC 3.2.1.3 GO:0004339 ... P69327 8195212
    1166 1agm:A (2.3) BS07 AC1 3.2.1.3 GO:0004339 ... P69327 8195212
    1167 1agm:A (2.3) BS08 MAN 3.2.1.3 GO:0004339 ... P69327 8195212
    1168 1agm:A (2.3) BS09 MAN 3.2.1.3 GO:0004339 ... P69327 8195212
    1169 1agm:A (2.3) BS10 MAN 3.2.1.3 GO:0004339 ... P69327 8195212
    1170 1agm:A (2.3) BS11 MAN 3.2.1.3 GO:0004339 ... P69327 8195212
    1171 1agm:A (2.3) BS12 MAN 3.2.1.3 GO:0004339 ... P69327 8195212
    1172 1agm:A (2.3) BS13 MAN 3.2.1.3 GO:0004339 ... P69327 8195212
    1173 1agm:A (2.3) BS14 MAN 3.2.1.3 GO:0004339 ... P69327 8195212
    1174 1agm:A (2.3) BS15 MAN 3.2.1.3 GO:0004339 ... P69327 8195212
    1175 1agn:A (3.0) BS01 ZN 1.1.1.1
    1.1.1.105
    1.1.1.66
    GO:0001523 ... P40394 9228021
    1176 1agn:A (3.0) BS02 ZN 1.1.1.1
    1.1.1.105
    1.1.1.66
    GO:0001523 ... P40394 9228021
    1177 1agn:A (3.0) BS03 ACT 1.1.1.1
    1.1.1.105
    1.1.1.66
    GO:0001523 ... P40394 9228021
    1178 1agn:A (3.0) BS04 NAD 1.1.1.1
    1.1.1.105
    1.1.1.66
    GO:0001523 ... P40394 9228021
    1179 1agn:B (3.0) BS01 ZN 1.1.1.1
    1.1.1.105
    1.1.1.66
    GO:0001523 ... P40394 9228021
    1180 1agn:B (3.0) BS02 ZN 1.1.1.1
    1.1.1.105
    1.1.1.66
    GO:0001523 ... P40394 9228021
    1181 1agn:B (3.0) BS03 ACT 1.1.1.1
    1.1.1.105
    1.1.1.66
    GO:0001523 ... P40394 9228021
    1182 1agn:B (3.0) BS04 NAD 1.1.1.1
    1.1.1.105
    1.1.1.66
    GO:0001523 ... P40394 9228021
    1183 1agn:C (3.0) BS01 ZN 1.1.1.1
    1.1.1.105
    1.1.1.66
    GO:0001523 ... P40394 9228021
    1184 1agn:C (3.0) BS02 ZN 1.1.1.1
    1.1.1.105
    1.1.1.66
    GO:0001523 ... P40394 9228021
    1185 1agn:C (3.0) BS03 NAD 1.1.1.1
    1.1.1.105
    1.1.1.66
    GO:0001523 ... P40394 9228021
    1186 1agn:D (3.0) BS01 ZN 1.1.1.1
    1.1.1.105
    1.1.1.66
    GO:0001523 ... P40394 9228021
    1187 1agn:D (3.0) BS02 ZN 1.1.1.1
    1.1.1.105
    1.1.1.66
    GO:0001523 ... P40394 9228021
    1188 1agn:D (3.0) BS03 ZN 1.1.1.1
    1.1.1.105
    1.1.1.66
    GO:0001523 ... P40394 9228021
    1189 1agn:D (3.0) BS04 ACT 1.1.1.1
    1.1.1.105
    1.1.1.66
    GO:0001523 ... P40394 9228021
    1190 1agn:D (3.0) BS05 NAD 1.1.1.1
    1.1.1.105
    1.1.1.66
    GO:0001523 ... P40394 9228021
    1191 1agp:A (2.3) BS01 MG 3.6.5.2 GO:0003924 ... P01112 8357792
    1192 1agp:A (2.3) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 8357792
    1193 1agr:A (2.8) BS01 MG ? GO:0000287 ... P10824 9108480
    1194 1agr:A (2.8) BS02 ALF ? GO:0000287 ... P10824 9108480
    1195 1agr:A (2.8) BS03 GDP ? GO:0000287 ... P10824 9108480
    1196 1agr:D (2.8) BS01 MG ? GO:0000287 ... P10824 9108480
    1197 1agr:D (2.8) BS02 ALF ? GO:0000287 ... P10824 9108480
    1198 1agr:D (2.8) BS03 GDP ? GO:0000287 ... P10824 9108480
    1199 1agw:A (2.4) BS01 SU2 2.7.10.1 GO:0004672 ... P11362 9139660 PDBbind: -logKd/Ki=4.70, IC50=20uM
    1200 1agw:B (2.4) BS01 SU2 2.7.10.1 GO:0004672 ... P11362 9139660

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218