To facilitate template-based protein-ligand docking and protein function annotation, all data from the BioLiP database are freely available. You can download them from the links provided below. ( Please DON'T attempt to download all the files at the same time which may result in crash of the network connections.)
Redundant set (Complete set of BioLiP before 2013-03-6. Updated subsets are available at the weekly update.)
Non-redundant set (Ligand-protein interaction sites with binding site residues identity > 90% and receptor sequence identity >90% are removed.)
Weekly update
Download the datasets of weekly update
Template library for protein function prediction by COACH and COFACTOR
Download the library
Standalone package for protein function prediction by COACH and COFACTOR
Donwload through the I-TASSER Suite
| Link | Description |
|---|---|
| Receptor (with original PDB residue numbering) (3.6 G) Receptor1 (with residues re-numbered starting from 1) (3.6 G) |
3D structures of PDB chains that interact with at least one biologically relevant small molecule |
| Ligand (438 M) | 3D structures of biologically relevant ligands |
| Annotations (19 M) | The annotations for each ligand-protein interaction site (README) |
| Link | Description |
|---|---|
| Receptor (with original PDB residue numbering) (2.2 G) Receptor1 (with residues re-numbered starting from 1) (2.2 G) |
3D structures of PDB chains that interact with at least one biologically relevant small molecule |
| Ligand (365 M) | 3D structures of biologically relevant ligands |
| Annotations (13 M) | The annotations for each ligand-protein interaction site (README) |
Download the datasets of weekly update
Download the library
Donwload through the I-TASSER Suite
zhanggroup.org