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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    5001 1c88:A (1.8) BS01 OTA 3.1.3.48 GO:0004725 ... P18031 10744717 MOAD: Ki=5.1uM
    PDBbind: -logKd/Ki=5.29, Ki=5.1uM
    BindingDB: IC50=500000nM, Ki=11500nM
    5002 1c8c:A (1.45) BS01 dna ? GO:0003677 ... P39476 11031116
    5003 1c8c:A (1.45) BS02 dna ? GO:0003677 ... P39476 11031116
    5004 1c8d:A (3.0) BS01 CA ? GO:0005198 ... P17455 10884355
    5005 1c8f:A (3.0) BS01 CA ? GO:0005198 ... P24840 10884355
    5006 1c8g:A (3.0) BS01 CA ? GO:0005198 ... P24840 10884355
    5007 1c8i:A (2.0) BS01 BMA 1.11.1.7 GO:0000302 ... P28313 10915789
    5008 1c8i:A (2.0) BS02 CA 1.11.1.7 GO:0000302 ... P28313 10915789
    5009 1c8i:A (2.0) BS03 CA 1.11.1.7 GO:0000302 ... P28313 10915789
    5010 1c8i:A (2.0) BS04 HEM 1.11.1.7 GO:0000302 ... P28313 10915789
    5011 1c8i:A (2.0) BS05 HOA 1.11.1.7 GO:0000302 ... P28313 10915789
    5012 1c8j:A (2.1) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 N/A
    5013 1c8j:B (2.1) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 N/A
    5014 1c8k:A (1.76) BS01 PLP 2.4.1.1 GO:0000166 ... P00489 10924512
    5015 1c8k:A (1.76) BS02 CPB 2.4.1.1 GO:0000166 ... P00489 10924512 MOAD: ic50=1uM
    PDBbind: -logKd/Ki=6.00, IC50=1uM
    BindingDB: IC50=1200nM
    5016 1c8l:A (2.3) BS01 PLP 2.4.1.1 GO:0000166 ... P00489 11368311
    5017 1c8l:A (2.3) BS02 BIN 2.4.1.1 GO:0000166 ... P00489 11368311 MOAD: ic50=6.9nM
    PDBbind: -logKd/Ki=8.16, IC50=6.9nM
    5018 1c8l:A (2.3) BS03 CFF 2.4.1.1 GO:0000166 ... P00489 11368311 MOAD: ic50=0.45mM
    BindingDB: IC50=114000nM
    5019 1c8m:1 (2.8) BS01 peptide 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0005198 ... Q82122 N/A
    5020 1c8m:1 (2.8) BS02 W11 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0005198 ... Q82122 N/A
    5021 1c8m:3 (2.8) BS01 peptide 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0005198 ... Q82122 N/A
    5022 1c8n:A (2.25) BS01 CA ? GO:0005198 ... Q9IPS9 10864506
    5023 1c8n:A (2.25) BS02 CA ? GO:0005198 ... Q9IPS9 10864506
    5024 1c8n:A (2.25) BS03 CA ? GO:0005198 ... Q9IPS9 10864506
    5025 1c8n:B (2.25) BS01 CA ? GO:0005198 ... Q9IPS9 10864506
    5026 1c8n:B (2.25) BS02 CA ? GO:0005198 ... Q9IPS9 10864506
    5027 1c8n:C (2.25) BS01 CA ? GO:0005198 ... Q9IPS9 10864506
    5028 1c8n:C (2.25) BS02 CA ? GO:0005198 ... Q9IPS9 10864506
    5029 1c8n:C (2.25) BS03 CA ? GO:0005198 ... Q9IPS9 10864506
    5030 1c8q:A (2.3) BS01 CA 3.2.1.1 GO:0003824 ... P0DUB6 N/A
    5031 1c8r:A (1.8) BS01 RET ? GO:0005216 ... P02945 10514362
    5032 1c8s:A (2.0) BS01 RET ? GO:0005216 ... P02945 10514362
    5033 1c8t:A (2.6) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10877850
    5034 1c8t:A (2.6) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10877850
    5035 1c8t:A (2.6) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10877850
    5036 1c8t:A (2.6) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10877850
    5037 1c8t:A (2.6) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10877850
    5038 1c8t:A (2.6) BS06 TR1 3.4.24.17 GO:0004222 ... P08254 10877850
    5039 1c8t:B (2.6) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10877850
    5040 1c8t:B (2.6) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10877850
    5041 1c8t:B (2.6) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10877850
    5042 1c8t:B (2.6) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10877850
    5043 1c8t:B (2.6) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10877850
    5044 1c8t:B (2.6) BS06 TR1 3.4.24.17 GO:0004222 ... P08254 10877850
    5045 1c8v:A (2.2) BS01 HE1 4.2.1.20 GO:0000162 ... P00929 10504236 MOAD: ic50=472nM
    PDBbind: -logKd/Ki=6.33, IC50=472nM
    5046 1c8v:B (2.2) BS01 PLP 4.2.1.20 GO:0000162 ... P0A2K1 10504236
    5047 1c8y:A (2.0) BS01 ZN 3.2.1.96 GO:0004553 ... P04067 10595536
    5048 1c96:A (1.81) BS01 FLC 4.2.1.3 GO:0003994 ... P20004 10631981
    5049 1c96:A (1.81) BS02 SF4 4.2.1.3 GO:0003994 ... P20004 10631981
    5050 1c97:A (1.98) BS01 SF4 4.2.1.3 GO:0003994 ... P20004 10631981
    5051 1c97:A (1.98) BS02 O 4.2.1.3 GO:0003994 ... P20004 10631981
    5052 1c9b:A (2.65) BS01 dna 2.3.1.48 GO:0006352 ... Q00403 10619841
    5053 1c9b:A (2.65) BS02 dna 2.3.1.48 GO:0006352 ... Q00403 10619841
    5054 1c9b:A (2.65) BS03 dna 2.3.1.48 GO:0006352 ... Q00403 10619841
    5055 1c9b:A (2.65) BS04 dna 2.3.1.48 GO:0006352 ... Q00403 10619841
    5056 1c9b:B (2.65) BS01 dna ? GO:0003677 ... P20226 10619841
    5057 1c9b:B (2.65) BS02 dna ? GO:0003677 ... P20226 10619841
    5058 1c9b:E (2.65) BS01 dna 2.3.1.48 GO:0006352 ... Q00403 10619841
    5059 1c9b:E (2.65) BS02 dna 2.3.1.48 GO:0006352 ... Q00403 10619841
    5060 1c9b:E (2.65) BS03 dna 2.3.1.48 GO:0006352 ... Q00403 10619841
    5061 1c9b:E (2.65) BS04 dna 2.3.1.48 GO:0006352 ... Q00403 10619841
    5062 1c9b:F (2.65) BS01 dna ? GO:0003677 ... P20226 10619841
    5063 1c9b:F (2.65) BS02 dna ? GO:0003677 ... P20226 10619841
    5064 1c9b:I (2.65) BS01 dna 2.3.1.48 GO:0006352 ... Q00403 10619841
    5065 1c9b:I (2.65) BS02 dna 2.3.1.48 GO:0006352 ... Q00403 10619841
    5066 1c9b:I (2.65) BS03 dna 2.3.1.48 GO:0006352 ... Q00403 10619841
    5067 1c9b:J (2.65) BS01 dna ? GO:0003677 ... P20226 10619841
    5068 1c9b:J (2.65) BS02 dna ? GO:0003677 ... P20226 10619841
    5069 1c9b:M (2.65) BS01 dna 2.3.1.48 GO:0006352 ... Q00403 10619841
    5070 1c9b:M (2.65) BS02 dna 2.3.1.48 GO:0006352 ... Q00403 10619841
    5071 1c9b:M (2.65) BS03 dna 2.3.1.48 GO:0006352 ... Q00403 10619841
    5072 1c9b:N (2.65) BS01 dna ? GO:0003677 ... P20226 10619841
    5073 1c9b:N (2.65) BS02 dna ? GO:0003677 ... P20226 10619841
    5074 1c9b:Q (2.65) BS01 dna 2.3.1.48 GO:0006352 ... Q00403 10619841
    5075 1c9b:Q (2.65) BS02 dna 2.3.1.48 GO:0006352 ... Q00403 10619841
    5076 1c9b:R (2.65) BS01 dna ? GO:0003677 ... P20226 10619841
    5077 1c9b:R (2.65) BS02 dna ? GO:0003677 ... P20226 10619841
    5078 1c9c:A (2.4) BS01 PP3 2.6.1.1 GO:0003824 ... P00509 10858450
    5079 1c9d:A (2.3) BS01 HF1 4.2.1.20 GO:0000162 ... P00929 10504236 MOAD: ic50=499nM
    PDBbind: -logKd/Ki=6.30, IC50=499nM
    5080 1c9d:B (2.3) BS01 PLP 4.2.1.20 GO:0000162 ... P0A2K1 10504236
    5081 1c9e:A (2.3) BS01 MP1 4.99.1.9 GO:0004325 ... P32396 10704318
    5082 1c9h:A (2.0) BS01 RAP 5.2.1.8 GO:0002027 ... P68106 10713512 BindingDB: Kd=0.200000nM
    5083 1c9i:A (2.9) BS01 peptide ? GO:0005198 ... P11442 10655490
    5084 1c9i:B (2.9) BS01 peptide ? GO:0005198 ... P11442 10655490
    5085 1c9j:A (1.8) BS01 CA 3.4.21.62 GO:0004252 ... P29600 10493860
    5086 1c9j:A (1.8) BS02 CA 3.4.21.62 GO:0004252 ... P29600 10493860
    5087 1c9k:A (2.2) BS01 5GP 2.7.1.156
    2.7.7.62
    GO:0000166 ... Q05599 10529169
    5088 1c9k:B (2.2) BS01 5GP 2.7.1.156
    2.7.7.62
    GO:0000166 ... Q05599 10529169
    5089 1c9k:C (2.2) BS01 MG 2.7.1.156
    2.7.7.62
    GO:0000166 ... Q05599 10529169
    5090 1c9k:C (2.2) BS02 POP 2.7.1.156
    2.7.7.62
    GO:0000166 ... Q05599 10529169
    5091 1c9k:C (2.2) BS03 5GP 2.7.1.156
    2.7.7.62
    GO:0000166 ... Q05599 10529169
    5092 1c9l:A (2.9) BS01 peptide ? GO:0005198 ... P11442 10655490
    5093 1c9l:B (2.9) BS01 peptide ? GO:0005198 ... P11442 10655490
    5094 1c9m:A (1.67) BS01 CA 3.4.21.62 GO:0004252 ... P29600 10493860
    5095 1c9m:A (1.67) BS02 CA 3.4.21.62 GO:0004252 ... P29600 10493860
    5096 1c9n:A (1.5) BS01 CA 3.4.21.62 GO:0004252 ... P29600 10493860
    5097 1c9n:A (1.5) BS02 CA 3.4.21.62 GO:0004252 ... P29600 10493860
    5098 1c9o:A (1.17) BS01 NA ? GO:0003676 ... P41016 10736231
    5099 1c9o:B (1.17) BS01 NA ? GO:0003676 ... P41016 10736231
    5100 1c9p:A (2.8) BS01 CA 3.4.21.4 GO:0004252 ... P00761 10512718
    5101 1c9q:A (-1.00) BS01 ZN 2.3.2.27 N/A P98170 10548111
    5102 1c9s:A (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 10499579
    5103 1c9s:A (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    5104 1c9s:A (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 10499579
    5105 1c9s:B (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 10499579
    5106 1c9s:B (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    5107 1c9s:C (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 10499579
    5108 1c9s:C (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    5109 1c9s:D (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 10499579
    5110 1c9s:D (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    5111 1c9s:E (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 10499579
    5112 1c9s:E (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    5113 1c9s:F (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 10499579
    5114 1c9s:F (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    5115 1c9s:G (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 10499579
    5116 1c9s:G (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    5117 1c9s:H (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 10499579
    5118 1c9s:H (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    5119 1c9s:I (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 10499579
    5120 1c9s:I (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    5121 1c9s:J (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 10499579
    5122 1c9s:J (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    5123 1c9s:K (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 10499579
    5124 1c9s:K (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    5125 1c9s:L (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 10499579
    5126 1c9s:L (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    5127 1c9s:L (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 10499579
    5128 1c9s:M (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 10499579
    5129 1c9s:M (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    5130 1c9s:M (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 10499579
    5131 1c9s:N (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 10499579
    5132 1c9s:N (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    5133 1c9s:N (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 10499579
    5134 1c9s:O (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 10499579
    5135 1c9s:O (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    5136 1c9s:O (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 10499579
    5137 1c9s:P (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 10499579
    5138 1c9s:P (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    5139 1c9s:P (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 10499579
    5140 1c9s:Q (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 10499579
    5141 1c9s:Q (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    5142 1c9s:Q (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 10499579
    5143 1c9s:R (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 10499579
    5144 1c9s:R (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    5145 1c9s:R (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 10499579
    5146 1c9s:S (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 10499579
    5147 1c9s:S (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    5148 1c9s:S (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 10499579
    5149 1c9s:T (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 10499579
    5150 1c9s:T (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    5151 1c9s:T (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 10499579
    5152 1c9s:U (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 10499579
    5153 1c9s:U (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    5154 1c9s:U (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 10499579
    5155 1c9s:V (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 10499579
    5156 1c9s:V (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    5157 1c9s:V (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 10499579
    5158 1c9u:A (2.2) BS01 CA 1.1.5.2 GO:0008876 ... P13650 10508152
    5159 1c9u:A (2.2) BS02 CA 1.1.5.2 GO:0008876 ... P13650 10508152
    5160 1c9u:A (2.2) BS03 CA 1.1.5.2 GO:0008876 ... P13650 10508152
    5161 1c9u:A (2.2) BS04 PQQ 1.1.5.2 GO:0008876 ... P13650 10508152
    5162 1c9u:B (2.2) BS01 CA 1.1.5.2 GO:0008876 ... P13650 10508152
    5163 1c9u:B (2.2) BS02 CA 1.1.5.2 GO:0008876 ... P13650 10508152
    5164 1c9u:B (2.2) BS03 CA 1.1.5.2 GO:0008876 ... P13650 10508152
    5165 1c9u:B (2.2) BS04 PQQ 1.1.5.2 GO:0008876 ... P13650 10508152
    5166 1c9w:A (2.4) BS01 NAP 1.1.1.21 GO:0004032 ... O08782 10651037
    5167 1c9y:A (1.9) BS01 NVA 2.1.3.3 GO:0000050 ... P00480 10813810
    5168 1c9y:A (1.9) BS02 CP 2.1.3.3 GO:0000050 ... P00480 10813810
    5169 1ca0:B (2.1) BS01 peptide 3.4.21.1 GO:0004252 ... P00766 9300481
    5170 1ca0:C (2.1) BS01 peptide 3.4.21.1 GO:0004252 ... P00766 9300481
    5171 1ca0:G (2.1) BS01 peptide 3.4.21.1 GO:0004252 ... P00766 9300481
    5172 1ca0:H (2.1) BS01 peptide 3.4.21.1 GO:0004252 ... P00766 9300481
    5173 1ca1:A (1.9) BS01 ZN 3.1.4.3 GO:0004629 ... P0C216 9699639
    5174 1ca2:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 3151019
    5175 1ca3:A (2.3) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    5176 1ca5:A (2.2) BS01 dna ? GO:0003677 ... P13123 11031116
    5177 1ca5:A (2.2) BS02 dna ? GO:0003677 ... P13123 11031116
    5178 1ca6:A (2.2) BS01 dna ? GO:0003677 ... P13123 11031116
    5179 1ca6:A (2.2) BS02 dna ? GO:0003677 ... P13123 11031116
    5180 1ca7:A (2.5) BS01 ENO 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 10353846
    5181 1ca7:A (2.5) BS02 ENO 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 10353846
    5182 1ca7:B (2.5) BS01 ENO 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 10353846
    5183 1ca7:B (2.5) BS02 ENO 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 10353846
    5184 1ca7:C (2.5) BS01 ENO 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 10353846
    5185 1ca7:C (2.5) BS02 ENO 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 10353846
    5186 1ca8:B (2.1) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 9724521
    5187 1ca8:B (2.1) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 9724521
    5188 1ca8:B (2.1) BS03 0KV 3.4.21.5 GO:0004252 ... P00734 9724521 PDBbind: -logKd/Ki=9.49, Ki=0.32nM
    BindingDB: IC50=0.67nM
    5189 1ca9:A (2.3) BS01 peptide 2.3.2.27 GO:0004842 ... Q12933 10206649
    5190 1ca9:B (2.3) BS01 peptide 2.3.2.27 GO:0004842 ... Q12933 10206649
    5191 1ca9:E (2.3) BS01 peptide 2.3.2.27 GO:0004842 ... Q12933 10206649
    5192 1caa:A (1.8) BS01 FE ? GO:0005506 ... P24297 1303768
    5193 1cad:A (1.8) BS01 FE ? GO:0005506 ... P24297 1303768
    5194 1cag:B (1.85) BS01 peptide N/A N/A N/A 7695699
    5195 1cag:B (1.85) BS02 peptide N/A N/A N/A 7695699
    5196 1cah:A (1.88) BS01 CO 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 1474587
    5197 1cah:A (1.88) BS02 BCT 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 1474587 BindingDB: Ki=85000000nM
    5198 1cai:A (1.8) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 7901850
    5199 1cai:A (1.8) BS02 SO4 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 7901850
    5200 1caj:A (1.9) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 7901850

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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