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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    895601 8y6o:I (3.38) BS01 rna 3.6.4.13 GO:0000354 ... Q9BUQ8 38484052
    895602 8y6o:I (3.38) BS02 rna 3.6.4.13 GO:0000354 ... Q9BUQ8 38484052
    895603 8y6o:L (3.38) BS01 rna ? GO:0000244 ... Q8WWY3 38484052
    895604 8y6o:L (3.38) BS02 rna ? GO:0000244 ... Q8WWY3 38484052
    895605 8y6o:N (3.38) BS01 rna ? GO:0000244 ... O43395 38484052
    895606 8y6o:N (3.38) BS02 rna ? GO:0000244 ... O43395 38484052
    895607 8y6o:O (3.38) BS01 rna ? GO:0000398 ... P55769 38484052
    895608 8y6o:R (3.38) BS01 rna ? GO:0000398 ... Q86UT8 38484052
    895609 8y6o:R (3.38) BS02 rna ? GO:0000398 ... Q86UT8 38484052
    895610 8y6o:R (3.38) BS03 ZN ? GO:0000398 ... Q86UT8 38484052
    895611 8y6o:R (3.38) BS04 ZN ? GO:0000398 ... Q86UT8 38484052
    895612 8y6o:U (3.38) BS01 ZN 3.4.19.12 GO:0000245 ... Q53GS9 38484052
    895613 8y6o:V (3.38) BS01 ZN ? GO:0005515 ... Q9UDW3 38484052
    895614 8y6o:V (3.38) BS02 ZN ? GO:0005515 ... Q9UDW3 38484052
    895615 8y6o:W (3.38) BS01 rna ? GO:0000398 ... Q16560 38484052
    895616 8y6o:W (3.38) BS02 rna ? GO:0000398 ... Q16560 38484052
    895617 8y6o:X (3.38) BS01 rna ? GO:0000398 ... Q9BV90 38484052
    895618 8y6o:X (3.38) BS02 rna ? GO:0000398 ... Q9BV90 38484052
    895619 8y6o:Y (3.38) BS01 rna ? GO:0005515 ... Q6IEG0 38484052
    895620 8y6o:Y (3.38) BS02 rna ? GO:0005515 ... Q6IEG0 38484052
    895621 8y6o:Y (3.38) BS03 ZN ? GO:0005515 ... Q6IEG0 38484052
    895622 8y6o:Z (3.38) BS01 rna ? GO:0005634 ... Q8N8D1 38484052
    895623 8y6o:a (3.38) BS01 rna ? GO:0000387 ... P14678 38484052
    895624 8y6o:b (3.38) BS01 rna ? GO:0000243 ... P62314 38484052
    895625 8y6o:c (3.38) BS01 rna ? GO:0000245 ... P62316 38484052
    895626 8y6o:d (3.38) BS01 rna ? GO:0000243 ... P62318 38484052
    895627 8y6o:e (3.38) BS01 rna ? GO:0000245 ... P62304 38484052
    895628 8y6o:f (3.38) BS01 rna ? GO:0000387 ... P62306 38484052
    895629 8y6o:g (3.38) BS01 rna ? GO:0000245 ... P62308 38484052
    895630 8y6o:h (3.38) BS01 rna ? GO:0000387 ... P14678 38484052
    895631 8y6o:i (3.38) BS01 rna ? GO:0000243 ... P62314 38484052
    895632 8y6o:j (3.38) BS01 rna ? GO:0000245 ... P62316 38484052
    895633 8y6o:k (3.38) BS01 rna ? GO:0000243 ... P62318 38484052
    895634 8y6o:l (3.38) BS01 rna ? GO:0000245 ... P62304 38484052
    895635 8y6o:m (3.38) BS01 rna ? GO:0000387 ... P62306 38484052
    895636 8y6o:n (3.38) BS01 rna ? GO:0000245 ... P62308 38484052
    895637 8y6o:o (3.38) BS01 rna ? GO:0000387 ... P14678 38484052
    895638 8y6o:p (3.38) BS01 rna ? GO:0000243 ... P62314 38484052
    895639 8y6o:q (3.38) BS01 rna ? GO:0000245 ... P62316 38484052
    895640 8y6o:r (3.38) BS01 rna ? GO:0000243 ... P62318 38484052
    895641 8y6o:s (3.38) BS01 rna ? GO:0000245 ... P62304 38484052
    895642 8y6o:t (3.38) BS01 rna ? GO:0000387 ... P62306 38484052
    895643 8y6o:u (3.38) BS01 rna ? GO:0000245 ... P62308 38484052
    895644 8y6u:C (3.97) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 38039839
    895645 8y6u:C (3.97) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 38039839
    895646 8y6u:D (3.97) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 38039839
    895647 8y6u:D (3.97) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 38039839
    895648 8y6u:F (3.97) BS01 dna ? GO:0003677 ... Q0P6L9 38039839
    895649 8y6u:F (3.97) BS02 dna ? GO:0003677 ... Q0P6L9 38039839
    895650 8y6u:H (3.97) BS01 dna ? GO:0003677 ... P0A9F6 38039839
    895651 8y6u:H (3.97) BS02 dna ? GO:0003677 ... P0A9F6 38039839
    895652 8y6u:I (3.97) BS01 dna 2.7.7.6 GO:0000345 ... P0A7Z4 38039839
    895653 8y6u:I (3.97) BS02 dna 2.7.7.6 GO:0000345 ... P0A7Z4 38039839
    895654 8y6u:J (3.97) BS01 dna ? GO:0003677 ... P0A9F6 38039839
    895655 8y6u:J (3.97) BS02 dna ? GO:0003677 ... P0A9F6 38039839
    895656 8y74:A (1.9) BS01 peptide N/A N/A O46789 38768812
    895657 8y74:D (1.9) BS01 peptide N/A N/A O46789 38768812
    895658 8y7e:1 (4.66) BS01 rna ? GO:0000245 ... O75533 38484052
    895659 8y7e:1 (4.66) BS02 rna ? GO:0000245 ... O75533 38484052
    895660 8y7e:2 (4.66) BS01 rna ? GO:0000398 ... Q13435 38484052
    895661 8y7e:6 (4.66) BS01 rna ? GO:0000398 ... Q7RTV0 38484052
    895662 8y7e:6 (4.66) BS02 rna ? GO:0000398 ... Q7RTV0 38484052
    895663 8y7e:6 (4.66) BS03 ZN ? GO:0000398 ... Q7RTV0 38484052
    895664 8y7e:6 (4.66) BS04 ZN ? GO:0000398 ... Q7RTV0 38484052
    895665 8y7e:6 (4.66) BS05 ZN ? GO:0000398 ... Q7RTV0 38484052
    895666 8y7e:h (4.66) BS01 rna ? GO:0000243 ... P62318 38484052
    895667 8y7e:i (4.66) BS01 rna ? GO:0000387 ... P14678 38484052
    895668 8y7e:j (4.66) BS01 rna ? GO:0000243 ... P62314 38484052
    895669 8y7e:k (4.66) BS01 rna ? GO:0000245 ... P62316 38484052
    895670 8y7e:l (4.66) BS01 rna ? GO:0000245 ... P62304 38484052
    895671 8y7e:m (4.66) BS01 rna ? GO:0000387 ... P62306 38484052
    895672 8y7e:n (4.66) BS01 rna ? GO:0000245 ... P62308 38484052
    895673 8y7e:v (4.66) BS01 rna ? GO:0000380 ... Q9BWG6 38484052
    895674 8y7e:v (4.66) BS02 ZN ? GO:0000380 ... Q9BWG6 38484052
    895675 8y7g:A (3.15) BS01 rna N/A N/A A0A0H2SHM8 38967023
    895676 8y7g:A (3.15) BS02 rna N/A N/A A0A0H2SHM8 38967023
    895677 8y7g:A (3.15) BS03 ACT N/A N/A A0A0H2SHM8 38967023
    895678 8y7g:B (3.15) BS01 rna N/A N/A A0A0H2SHM8 38967023
    895679 8y7g:B (3.15) BS02 rna N/A N/A A0A0H2SHM8 38967023
    895680 8y7g:B (3.15) BS03 ACT N/A N/A A0A0H2SHM8 38967023
    895681 8y7l:B (2.683) BS01 A1D59 N/A N/A P22736 N/A
    895682 8y7y:A (3.24) BS01 MJJ N/A GO:0016020 ... Q5MQD0 38964329
    895683 8y81:B (2.89) BS01 Y01 N/A GO:0005768 ... P13386 39169187
    895684 8y83:A (2.0) BS01 NAD ? N/A A0A562MSV3 N/A
    895685 8y83:B (2.0) BS01 NAD ? N/A A0A562MSV3 N/A
    895686 8y84:A (2.98) BS01 Y01 N/A N/A P12371 39169187
    895687 8y84:B (2.98) BS01 Y01 N/A GO:0005768 ... P13386 39169187
    895688 8y85:A (2.73) BS01 BCT N/A GO:0005452 ... P48751 39033175
    895689 8y85:A (2.73) BS02 4KU N/A GO:0005452 ... P48751 39033175
    895690 8y85:B (2.73) BS01 4KU N/A GO:0005452 ... P48751 39033175
    895691 8y86:A (2.75) BS01 BCT N/A GO:0005452 ... P48751 39033175
    895692 8y8b:A (3.01) BS01 MJJ N/A GO:0016020 ... Q0ZME7 38964329
    895693 8y8j:A (3.57) BS01 MJJ N/A GO:0016020 ... Q0ZME7 38964329
    895694 8y8z:A (3.29) BS01 A1LX3 ? GO:0003779 ... P23975 38750358
    895695 8y8z:E (3.29) BS01 A1LX3 ? GO:0003779 ... P23975 38750358
    895696 8y90:A (3.15) BS01 A1LX6 ? GO:0003779 ... P23975 38750358
    895697 8y91:A (3.13) BS01 A1LX5 ? GO:0003779 ... P23975 38750358
    895698 8y91:D (3.13) BS01 A1LX5 ? GO:0003779 ... P23975 38750358
    895699 8y92:A (3.29) BS01 A1LX4 ? GO:0003779 ... P23975 38750358
    895700 8y92:B (3.29) BS01 A1LX4 ? GO:0003779 ... P23975 38750358
    895701 8y93:A (3.0) BS01 TP0 ? GO:0003779 ... P23975 38750358
    895702 8y95:A (3.24) BS01 E5E ? GO:0003779 ... P23975 38750358
    895703 8y95:D (3.24) BS01 E5E ? GO:0003779 ... P23975 38750358
    895704 8y9b:B (3.2) BS01 ZN N/A N/A P18177 N/A
    895705 8y9c:B (3.0) BS01 ZN N/A N/A N/A N/A
    895706 8y9p:A (1.64) BS01 A3P ? N/A A0A6G7MAL8 38621346
    895707 8y9v:C (1.9) BS01 peptide 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004252 ... Q32ZE1 N/A
    895708 8y9v:D (1.9) BS01 peptide 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... Q32ZE1 N/A
    895709 8y9x:A (2.0) BS01 HEM 1.11.1.7 GO:0004601 ... P80025 N/A
    895710 8y9x:A (2.0) BS02 CA 1.11.1.7 GO:0004601 ... P80025 N/A
    895711 8ya7:A (1.99) BS01 X6Y ? N/A A0A1B1Y779 N/A
    895712 8ya7:A (1.99) BS02 X6Y ? N/A A0A1B1Y779 N/A
    895713 8ya7:A (1.99) BS03 X2Y ? N/A A0A1B1Y779 N/A
    895714 8yb6:A (3.06) BS01 rna N/A GO:0051607 ... A0A1V6F8C5 39047725
    895715 8yb6:A (3.06) BS02 ZN N/A GO:0051607 ... A0A1V6F8C5 39047725
    895716 8yb6:B (3.06) BS01 rna N/A GO:0016787 ... A0A1V6F8C4 39047725
    895717 8yb6:D (3.06) BS01 rna N/A N/A A0A1V6F8B5 39047725
    895718 8yb6:E (3.06) BS01 rna N/A N/A A0A1V6F8B5 39047725
    895719 8yb6:F (3.06) BS01 rna N/A N/A A0A1V6F8B5 39047725
    895720 8yb6:G (3.06) BS01 rna N/A N/A A0A1V6F8B5 39047725
    895721 8yb6:H (3.06) BS01 rna N/A N/A A0A1V6F8B5 39047725
    895722 8yb6:I (3.06) BS01 rna N/A N/A A0A1V6F8B5 39047725
    895723 8yb6:J (3.06) BS01 rna N/A N/A A0A1V6F8D1 39047725
    895724 8yb6:J (3.06) BS02 ZN N/A N/A A0A1V6F8D1 39047725
    895725 8ybe:A (2.3) BS01 GLC ? GO:0005515 ... P0AEX9 N/A
    895726 8ybe:A (2.3) BS02 GLC ? GO:0005515 ... P0AEX9 N/A
    895727 8ybj:A (2.38) BS01 dna N/A GO:0000786 ... P68431 38972377
    895728 8ybj:A (2.38) BS02 dna N/A GO:0000786 ... P68431 38972377
    895729 8ybj:B (2.38) BS01 dna N/A GO:0000781 ... P62805 38972377
    895730 8ybj:B (2.38) BS02 dna N/A GO:0000781 ... P62805 38972377
    895731 8ybj:C (2.38) BS01 dna N/A GO:0000786 ... P04908 38972377
    895732 8ybj:C (2.38) BS02 dna N/A GO:0000786 ... P04908 38972377
    895733 8ybj:D (2.38) BS01 dna N/A GO:0000786 ... P06899 38972377
    895734 8ybj:D (2.38) BS02 dna N/A GO:0000786 ... P06899 38972377
    895735 8ybj:E (2.38) BS01 dna N/A GO:0000786 ... P68431 38972377
    895736 8ybj:E (2.38) BS02 dna N/A GO:0000786 ... P68431 38972377
    895737 8ybj:F (2.38) BS01 dna N/A GO:0000781 ... P62805 38972377
    895738 8ybj:F (2.38) BS02 dna N/A GO:0000781 ... P62805 38972377
    895739 8ybj:G (2.38) BS01 dna N/A GO:0000786 ... P04908 38972377
    895740 8ybj:G (2.38) BS02 dna N/A GO:0000786 ... P04908 38972377
    895741 8ybj:H (2.38) BS01 dna N/A GO:0000786 ... P06899 38972377
    895742 8ybj:H (2.38) BS02 dna N/A GO:0000786 ... P06899 38972377
    895743 8ybk:A (2.69) BS01 dna N/A GO:0000786 ... P68431 38972377
    895744 8ybk:A (2.69) BS02 dna N/A GO:0000786 ... P68431 38972377
    895745 8ybk:B (2.69) BS01 dna N/A GO:0000781 ... P62805 38972377
    895746 8ybk:B (2.69) BS02 dna N/A GO:0000781 ... P62805 38972377
    895747 8ybk:C (2.69) BS01 dna N/A GO:0000786 ... P04908 38972377
    895748 8ybk:C (2.69) BS02 dna N/A GO:0000786 ... P04908 38972377
    895749 8ybk:D (2.69) BS01 dna N/A GO:0000786 ... P06899 38972377
    895750 8ybk:E (2.69) BS01 dna N/A GO:0000786 ... P68431 38972377
    895751 8ybk:E (2.69) BS02 dna N/A GO:0000786 ... P68431 38972377
    895752 8ybk:F (2.69) BS01 dna N/A GO:0000781 ... P62805 38972377
    895753 8ybk:F (2.69) BS02 dna N/A GO:0000781 ... P62805 38972377
    895754 8ybk:G (2.69) BS01 dna N/A GO:0000786 ... P04908 38972377
    895755 8ybk:G (2.69) BS02 dna N/A GO:0000786 ... P04908 38972377
    895756 8ybk:H (2.69) BS01 dna N/A GO:0000786 ... P06899 38972377
    895757 8ybk:H (2.69) BS02 dna N/A GO:0000786 ... P06899 38972377
    895758 8ybq:A (2.59) BS01 CHT N/A N/A N/A 39141726
    895759 8ybq:B (2.59) BS01 CHT N/A N/A N/A 39141726
    895760 8ybq:C (2.59) BS01 CHT N/A N/A N/A 39141726
    895761 8yc0:e (4.12) BS01 peptide ? GO:0004888 ... P07766 38657677
    895762 8yc0:m (4.12) BS01 peptide ? GO:0002250 ... A0JD36
    B7Z8K6    		 38657677
    895763 8yc0:m (4.12) BS02 CLR ? GO:0002250 ... A0JD36
    B7Z8K6    		 38657677
    895764 8yc0:n (4.12) BS01 peptide ? GO:0002250 ... P0CF51
    Q99603    		 38657677
    895765 8yd3:A (1.96) BS01 ZN N/A N/A P00441 N/A
    895766 8yd3:A (1.96) BS02 A1LYN N/A N/A P00441 N/A
    895767 8yd3:B (1.96) BS01 ZN N/A N/A P00441 N/A
    895768 8yd3:C (1.96) BS01 ZN N/A N/A P00441 N/A
    895769 8yd3:C (1.96) BS02 A1LYN N/A N/A P00441 N/A
    895770 8yd3:D (1.96) BS01 A1LYN N/A N/A P00441 N/A
    895771 8yd3:D (1.96) BS02 ZN N/A N/A P00441 N/A
    895772 8yd3:E (1.96) BS01 ZN N/A N/A P00441 N/A
    895773 8yd3:F (1.96) BS01 ZN N/A N/A P00441 N/A
    895774 8yd3:H (1.96) BS01 ZN N/A N/A P00441 N/A
    895775 8yd3:H (1.96) BS02 A1LYN N/A N/A P00441 N/A
    895776 8yd3:I (1.96) BS01 ZN N/A N/A P00441 N/A
    895777 8yd3:I (1.96) BS02 A1LYN N/A N/A P00441 N/A
    895778 8yd3:J (1.96) BS01 ZN N/A N/A P00441 N/A
    895779 8ydb:A (3.4) BS01 rna N/A N/A N/A 39047725
    895780 8ydb:A (3.4) BS02 rna N/A N/A N/A 39047725
    895781 8ydb:B (3.4) BS01 rna N/A N/A N/A 39047725
    895782 8ydb:D (3.4) BS01 rna N/A N/A N/A 39047725
    895783 8ydb:E (3.4) BS01 rna N/A N/A N/A 39047725
    895784 8ydb:E (3.4) BS02 rna N/A N/A N/A 39047725
    895785 8ydb:F (3.4) BS01 rna N/A N/A N/A 39047725
    895786 8ydb:F (3.4) BS02 rna N/A N/A N/A 39047725
    895787 8ydb:G (3.4) BS01 rna N/A N/A N/A 39047725
    895788 8ydb:G (3.4) BS02 rna N/A N/A N/A 39047725
    895789 8ydb:H (3.4) BS01 rna N/A N/A N/A 39047725
    895790 8ydb:H (3.4) BS02 rna N/A N/A N/A 39047725
    895791 8ydb:I (3.4) BS01 rna N/A N/A N/A 39047725
    895792 8ydb:I (3.4) BS02 rna N/A N/A N/A 39047725
    895793 8ydb:J (3.4) BS01 rna N/A N/A N/A 39047725
    895794 8ydb:J (3.4) BS02 rna N/A N/A N/A 39047725
    895795 8ydb:J (3.4) BS03 rna N/A N/A N/A 39047725
    895796 8ye0:A (1.94) BS01 PIS N/A GO:0016740 ... A0A551Z2V8 38837490
    895797 8ye0:B (1.94) BS01 PIS N/A GO:0016740 ... A0A551Z2V8 38837490
    895798 8ye0:C (1.94) BS01 PIS N/A GO:0016740 ... A0A551Z2V8 38837490
    895799 8ye0:D (1.94) BS01 PIS N/A GO:0016740 ... A0A551Z2V8 38837490
    895800 8ye4:A (3.2) BS01 peptide N/A N/A Q6IVJ7 39002680
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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