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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2801 1b82:A (1.8) BS01 CA 1.11.1.14 GO:0000302 ... P06181 11162097
    2802 1b82:A (1.8) BS02 CA 1.11.1.14 GO:0000302 ... P06181 11162097
    2803 1b82:A (1.8) BS03 HEM 1.11.1.14 GO:0000302 ... P06181 11162097
    2804 1b82:B (1.8) BS01 CA 1.11.1.14 GO:0000302 ... P06181 11162097
    2805 1b82:B (1.8) BS02 CA 1.11.1.14 GO:0000302 ... P06181 11162097
    2806 1b82:B (1.8) BS03 HEM 1.11.1.14 GO:0000302 ... P06181 11162097
    2807 1b85:A (1.85) BS01 CA 1.11.1.14 GO:0000302 ... P06181 11162097
    2808 1b85:A (1.85) BS02 CA 1.11.1.14 GO:0000302 ... P06181 11162097
    2809 1b85:A (1.85) BS03 HEM 1.11.1.14 GO:0000302 ... P06181 11162097
    2810 1b85:B (1.85) BS01 CA 1.11.1.14 GO:0000302 ... P06181 11162097
    2811 1b85:B (1.85) BS02 CA 1.11.1.14 GO:0000302 ... P06181 11162097
    2812 1b85:B (1.85) BS03 HEM 1.11.1.14 GO:0000302 ... P06181 11162097
    2813 1b86:A (2.5) BS01 HEM ? GO:0004601 ... P69905 8377203
    2814 1b86:B (2.5) BS01 HEM ? GO:0004601 ... P68871 8377203
    2815 1b86:B (2.5) BS02 DG2 ? GO:0004601 ... P68871 8377203
    2816 1b86:C (2.5) BS01 HEM ? GO:0004601 ... P69905 8377203
    2817 1b86:D (2.5) BS01 HEM ? GO:0004601 ... P68871 8377203
    2818 1b87:A (2.7) BS01 ACO ? GO:0016747 ... Q47764 10378269
    2819 1b8a:A (1.9) BS01 MN 6.1.1.12 GO:0000166 ... Q52428 9724658
    2820 1b8a:A (1.9) BS02 ATP 6.1.1.12 GO:0000166 ... Q52428 9724658
    2821 1b8a:B (1.9) BS01 MN 6.1.1.12 GO:0000166 ... Q52428 9724658
    2822 1b8a:B (1.9) BS02 ATP 6.1.1.12 GO:0000166 ... Q52428 9724658
    2823 1b8c:A (2.0) BS01 MG ? GO:0005509 ... P02618 10545326
    2824 1b8c:B (2.0) BS01 MG ? GO:0005509 ... P02618 10545326
    2825 1b8d:A (1.9) BS01 PEB ? GO:0009507 ... O36005 10388620
    2826 1b8d:A (1.9) BS02 PEB ? GO:0009507 ... O36005 10388620
    2827 1b8d:A (1.9) BS03 PEB ? GO:0009507 ... O36005 10388620
    2828 1b8d:A (1.9) BS04 PEB ? GO:0009507 ... O36005 10388620
    2829 1b8d:B (1.9) BS01 PEB ? GO:0009507 ... O36004 10388620
    2830 1b8d:B (1.9) BS02 PEB ? GO:0009507 ... O36004 10388620
    2831 1b8d:B (1.9) BS03 PUB ? GO:0009507 ... O36004 10388620
    2832 1b8d:K (1.9) BS01 PEB ? GO:0009507 ... O36005 10388620
    2833 1b8d:K (1.9) BS02 PEB ? GO:0009507 ... O36005 10388620
    2834 1b8d:K (1.9) BS03 PEB ? GO:0009507 ... O36005 10388620
    2835 1b8d:L (1.9) BS01 PEB ? GO:0009507 ... O36004 10388620
    2836 1b8d:L (1.9) BS02 PEB ? GO:0009507 ... O36004 10388620
    2837 1b8d:L (1.9) BS03 PUB ? GO:0009507 ... O36004 10388620
    2838 1b8g:A (2.37) BS01 PLP 1.4.-.-
    4.4.1.14
    GO:0003824 ... P37821 10610793
    2839 1b8g:B (2.37) BS01 PLP 1.4.-.-
    4.4.1.14
    GO:0003824 ... P37821 10610793
    2840 1b8h:B (3.0) BS01 peptide ? GO:0006260 ... O80164 10535734
    2841 1b8i:A (2.4) BS01 dna ? GO:0000981 ... P83949 10067897
    2842 1b8i:A (2.4) BS02 dna ? GO:0000981 ... P83949 10067897
    2843 1b8i:B (2.4) BS01 dna ? GO:0000981 ... P40427 10067897
    2844 1b8i:B (2.4) BS02 dna ? GO:0000981 ... P40427 10067897
    2845 1b8j:A (1.9) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 10085061
    2846 1b8j:A (1.9) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 10085061
    2847 1b8j:A (1.9) BS03 MG 3.1.3.1 GO:0000287 ... P00634 10085061
    2848 1b8j:B (1.9) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 10085061
    2849 1b8j:B (1.9) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 10085061
    2850 1b8j:B (1.9) BS03 MG 3.1.3.1 GO:0000287 ... P00634 10085061
    2851 1b8l:A (1.7) BS01 CA ? GO:0005509 ... P02618 10545326
    2852 1b8n:A (2.0) BS01 IMG 2.4.2.1 GO:0003824 ... P55859 12463747 MOAD: Ki=30pM
    PDBbind: -logKd/Ki=10.52, Ki=30pM
    BindingDB: Ki=0.030000nM
    2853 1b8o:A (1.5) BS01 PO4 2.4.2.1 GO:0003824 ... P55859 11170405
    2854 1b8o:A (1.5) BS02 IMH 2.4.2.1 GO:0003824 ... P55859 11170405 MOAD: Ki=23pM
    PDBbind: -logKd/Ki=10.64, Ki=23pM
    2855 1b8q:A (-1.00) BS01 peptide 1.14.13.39 N/A P29476 10331866
    2856 1b8r:A (1.9) BS01 CA ? GO:0005509 ... P02618 10545326
    2857 1b8r:A (1.9) BS02 CA ? GO:0005509 ... P02618 10545326
    2858 1b8s:A (1.65) BS01 FAD 1.1.3.6
    5.3.3.1
    GO:0004769 ... P12676 10194345
    2859 1b8t:A (-1.00) BS01 ZN ? GO:0001725 ... P67966 10231520
    2860 1b8t:A (-1.00) BS02 ZN ? GO:0001725 ... P67966 10231520
    2861 1b8t:A (-1.00) BS03 ZN ? GO:0001725 ... P67966 10231520
    2862 1b8t:A (-1.00) BS04 ZN ? GO:0001725 ... P67966 10231520
    2863 1b8u:A (2.5) BS01 OAA 1.1.1.37 GO:0003824 ... Q9ZF99 10206992
    2864 1b8u:A (2.5) BS02 NAD 1.1.1.37 GO:0003824 ... Q9ZF99 10206992
    2865 1b8v:A (2.1) BS01 NAD 1.1.1.37 GO:0003824 ... Q9ZF99 10206992
    2866 1b8y:A (2.0) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10422833
    2867 1b8y:A (2.0) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10422833
    2868 1b8y:A (2.0) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    2869 1b8y:A (2.0) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    2870 1b8y:A (2.0) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    2871 1b8y:A (2.0) BS06 IN7 3.4.24.17 GO:0004222 ... P08254 10422833 MOAD: Ki=14nM
    PDBbind: -logKd/Ki=7.85, Ki=14nM
    2872 1b90:A (2.5) BS01 ACT 3.2.1.2 GO:0000272 ... P36924 10353816
    2873 1b90:A (2.5) BS02 CA 3.2.1.2 GO:0000272 ... P36924 10353816
    2874 1b93:B (1.9) BS01 PO4 4.2.3.3 GO:0005737 ... P0A731 10368300
    2875 1b94:A (1.9) BS01 dna 3.1.21.4 GO:0003677 ... P04390 10446231
    2876 1b94:A (1.9) BS02 dna 3.1.21.4 GO:0003677 ... P04390 10446231
    2877 1b94:A (1.9) BS03 CA 3.1.21.4 GO:0003677 ... P04390 10446231
    2878 1b94:B (1.9) BS01 dna 3.1.21.4 GO:0003677 ... P04390 10446231
    2879 1b94:B (1.9) BS02 dna 3.1.21.4 GO:0003677 ... P04390 10446231
    2880 1b94:B (1.9) BS03 CA 3.1.21.4 GO:0003677 ... P04390 10446231
    2881 1b95:A (2.05) BS01 dna 3.1.21.4 GO:0003677 ... P04390 10446231
    2882 1b95:A (2.05) BS02 dna 3.1.21.4 GO:0003677 ... P04390 10446231
    2883 1b95:B (2.05) BS01 dna 3.1.21.4 GO:0003677 ... P04390 10446231
    2884 1b95:B (2.05) BS02 dna 3.1.21.4 GO:0003677 ... P04390 10446231
    2885 1b96:A (2.3) BS01 dna 3.1.21.4 GO:0003677 ... P04390 10446231
    2886 1b96:A (2.3) BS02 dna 3.1.21.4 GO:0003677 ... P04390 10446231
    2887 1b96:B (2.3) BS01 dna 3.1.21.4 GO:0003677 ... P04390 10446231
    2888 1b96:B (2.3) BS02 dna 3.1.21.4 GO:0003677 ... P04390 10446231
    2889 1b97:A (1.9) BS01 dna 3.1.21.4 GO:0003677 ... P04390 10446231
    2890 1b97:A (1.9) BS02 dna 3.1.21.4 GO:0003677 ... P04390 10446231
    2891 1b97:B (1.9) BS01 dna 3.1.21.4 GO:0003677 ... P04390 10446231
    2892 1b97:B (1.9) BS02 dna 3.1.21.4 GO:0003677 ... P04390 10446231
    2893 1b99:A (2.7) BS01 FUP 2.7.4.6 GO:0004550 ... P22887 10353838
    2894 1b99:C (2.7) BS01 POP 2.7.4.6 GO:0004550 ... P22887 10353838
    2895 1b99:D (2.7) BS01 POP 2.7.4.6 GO:0004550 ... P22887 10353838
    2896 1b99:E (2.7) BS01 POP 2.7.4.6 GO:0004550 ... P22887 10353838
    2897 1b9a:A (2.0) BS01 CA ? GO:0005509 ... P02618 10545326
    2898 1b9a:A (2.0) BS02 CA ? GO:0005509 ... P02618 10545326
    2899 1b9e:B (2.5) BS01 peptide ? GO:0005179 ... P01308 10489447
    2900 1b9e:D (2.5) BS01 peptide ? GO:0005179 ... P01308 10489447
    2901 1b9h:A (2.0) BS01 PLP 2.6.1.-
    4.2.1.144
    GO:0000271 ... O52552 10433690
    2902 1b9i:A (2.0) BS01 PXG 2.6.1.-
    4.2.1.144
    GO:0000271 ... O52552 10433690
    2903 1b9j:A (1.8) BS01 peptide ? GO:0015031 ... P06202 10438628
    2904 1b9o:A (1.15) BS01 CA ? GO:0000139 ... P00709 10080897
    2905 1b9r:A (-1.00) BS01 FES ? GO:0005829 ... P33007 10220356
    2906 1b9s:A (2.5) BS01 CA 3.2.1.18 GO:0004308 ... P03474 10547289
    2907 1b9s:A (2.5) BS02 FDI 3.2.1.18 GO:0004308 ... P03474 10547289 MOAD: ic50>667uM
    PDBbind: -logKd/Ki=3.18, IC50>667uM
    BindingDB: IC50=670000nM
    2908 1b9t:A (2.4) BS01 CA 3.2.1.18 GO:0004308 ... P03474 10547289
    2909 1b9t:A (2.4) BS02 RAI 3.2.1.18 GO:0004308 ... P03474 10547289 MOAD: ic50=8uM
    PDBbind: -logKd/Ki=5.10, IC50=8uM
    BindingDB: IC50=8000nM
    2910 1b9v:A (2.35) BS01 CA 3.2.1.18 GO:0004308 ... P03474 10547289
    2911 1b9v:A (2.35) BS02 RA2 3.2.1.18 GO:0004308 ... P03474 10547289 MOAD: ic50=224uM
    PDBbind: -logKd/Ki=3.65, IC50=224uM
    BindingDB: IC50=271000nM
    2912 1b9z:A (2.1) BS01 GLC 3.2.1.2 GO:0000272 ... P36924 10353816
    2913 1b9z:A (2.1) BS02 GLC 3.2.1.2 GO:0000272 ... P36924 10353816
    2914 1b9z:A (2.1) BS03 GLC 3.2.1.2 GO:0000272 ... P36924 10353816
    2915 1b9z:A (2.1) BS04 GLC 3.2.1.2 GO:0000272 ... P36924 10353816
    2916 1b9z:A (2.1) BS05 GLC 3.2.1.2 GO:0000272 ... P36924 10353816
    2917 1b9z:A (2.1) BS06 GLC 3.2.1.2 GO:0000272 ... P36924 10353816
    2918 1b9z:A (2.1) BS07 GLC 3.2.1.2 GO:0000272 ... P36924 10353816
    2919 1b9z:A (2.1) BS08 ACT 3.2.1.2 GO:0000272 ... P36924 10353816
    2920 1b9z:A (2.1) BS09 CA 3.2.1.2 GO:0000272 ... P36924 10353816
    2921 1ba0:A (1.9) BS01 ADP 3.6.4.10 GO:0005524 ... P19120 9585559
    2922 1ba1:A (1.7) BS01 ADP 3.6.4.10 GO:0005524 ... P19120 9585559
    2923 1ba3:A (2.2) BS01 MBR 1.13.12.7 GO:0001676 ... P08659 9788915
    2924 1ba3:A (2.2) BS02 MBR 1.13.12.7 GO:0001676 ... P08659 9788915
    2925 1ba8:B (1.8) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 9724521
    2926 1ba8:B (1.8) BS02 0IT 3.4.21.5 GO:0004252 ... P00734 9724521 PDBbind: -logKd/Ki=9.00, Ki=1.0nM
    2927 1ba9:A (-1.00) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 9718300
    2928 1ba9:A (-1.00) BS02 CU1 1.15.1.1 GO:0000302 ... P00441 9718300
    2929 1bab:A (1.5) BS01 HEM ? GO:0004601 ... P69905 1618774
    2930 1bab:B (1.5) BS01 HEM ? GO:0004601 ... P68871 1618774
    2931 1bab:C (1.5) BS01 HEM ? GO:0004601 ... P69905 1618774
    2932 1bab:D (1.5) BS01 HEM ? GO:0004601 ... P68871 1618774
    2933 1baf:L (2.9) BS01 NPP N/A N/A N/A 1920408
    2934 1bag:A (2.5) BS01 BGC 3.2.1.1 GO:0003824 ... P00691 9514750
    2935 1bag:A (2.5) BS02 GLC 3.2.1.1 GO:0003824 ... P00691 9514750
    2936 1bag:A (2.5) BS03 GLC 3.2.1.1 GO:0003824 ... P00691 9514750
    2937 1bag:A (2.5) BS04 GLC 3.2.1.1 GO:0003824 ... P00691 9514750
    2938 1bag:A (2.5) BS05 GLC 3.2.1.1 GO:0003824 ... P00691 9514750
    2939 1bag:A (2.5) BS06 CA 3.2.1.1 GO:0003824 ... P00691 9514750
    2940 1bag:A (2.5) BS07 CA 3.2.1.1 GO:0003824 ... P00691 9514750
    2941 1bag:A (2.5) BS08 CA 3.2.1.1 GO:0003824 ... P00691 9514750
    2942 1bai:A (2.4) BS01 0Q4 3.4.23.- GO:0004190 ... P03322 9521772 MOAD: Ki=20nM
    PDBbind: -logKd/Ki=7.70, Ki=20nM
    2943 1bai:B (2.4) BS01 0Q4 3.4.23.- GO:0004190 ... P03322 9521772 PDBbind: -logKd/Ki=7.70, Ki=20nM
    2944 1bap:A (1.75) BS01 ARA ? GO:0015407 ... P02924 2204627 MOAD: Kd=0.14uM
    2945 1bap:A (1.75) BS02 ARB ? GO:0015407 ... P02924 2204627 MOAD: Kd=0.14uM
    PDBbind: -logKd/Ki=6.85, Kd=0.14uM
    2946 1bav:A (1.6) BS01 ZN 3.4.17.1 GO:0004181 ... P00730 N/A
    2947 1bav:A (1.6) BS02 BIP 3.4.17.1 GO:0004181 ... P00730 N/A
    2948 1bav:B (1.6) BS01 ZN 3.4.17.1 GO:0004181 ... P00730 N/A
    2949 1bav:B (1.6) BS02 BIP 3.4.17.1 GO:0004181 ... P00730 N/A
    2950 1bav:C (1.6) BS01 ZN 3.4.17.1 GO:0004181 ... P00730 N/A
    2951 1bav:C (1.6) BS02 BIP 3.4.17.1 GO:0004181 ... P00730 N/A
    2952 1bav:D (1.6) BS01 ZN 3.4.17.1 GO:0004181 ... P00730 N/A
    2953 1bav:D (1.6) BS02 BIP 3.4.17.1 GO:0004181 ... P00730 N/A
    2954 1baw:A (2.8) BS01 CU ? GO:0005507 ... Q51883 10089349
    2955 1baw:A (2.8) BS02 ZN ? GO:0005507 ... Q51883 10089349
    2956 1baw:B (2.8) BS01 CU ? GO:0005507 ... Q51883 10089349
    2957 1baw:B (2.8) BS02 ZN ? GO:0005507 ... Q51883 10089349
    2958 1baw:C (2.8) BS01 CU ? GO:0005507 ... Q51883 10089349
    2959 1baw:C (2.8) BS02 ZN ? GO:0005507 ... Q51883 10089349
    2960 1bb0:B (2.1) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 9724521
    2961 1bb0:B (2.1) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 9724521
    2962 1bb0:B (2.1) BS03 0IV 3.4.21.5 GO:0004252 ... P00734 9724521 PDBbind: -logKd/Ki=8.36, Ki=4.4nM
    BindingDB: IC50=28.8nM
    2963 1bb6:A (2.0) BS01 UMG 3.2.1.17 GO:0003796 ... P11941 10089395 MOAD: Ka=500000M^-1
    2964 1bb7:A (2.0) BS01 GUM 3.2.1.17 GO:0003796 ... P11941 10089395 MOAD: Ka=15000M^-1
    2965 1bbb:A (1.7) BS01 HEM ? GO:0004601 ... P69905 1512262
    2966 1bbb:B (1.7) BS01 HEM ? GO:0004601 ... P68871 1512262
    2967 1bbb:C (1.7) BS01 HEM ? GO:0004601 ... P69905 1512262
    2968 1bbb:D (1.7) BS01 HEM ? GO:0004601 ... P68871 1512262
    2969 1bbh:A (1.8) BS01 HEC ? GO:0005506 ... P00154 8230224
    2970 1bbh:B (1.8) BS01 HEC ? GO:0005506 ... P00154 8230224
    2971 1bbo:A (-1.00) BS01 ZN ? N/A P15822 1567844
    2972 1bbo:A (-1.00) BS02 ZN ? N/A P15822 1567844
    2973 1bbp:A (2.0) BS01 BLV ? GO:0000302 ... P09464 3430616
    2974 1bbp:B (2.0) BS01 BLV ? GO:0000302 ... P09464 3430616
    2975 1bbp:C (2.0) BS01 BLV ? GO:0000302 ... P09464 3430616
    2976 1bbp:D (2.0) BS01 BLV ? GO:0000302 ... P09464 3430616
    2977 1bbr:E (2.3) BS01 peptide 3.4.21.5 GO:0004252 ... P00735 1560020
    2978 1bbr:H (2.3) BS01 peptide 3.4.21.5 GO:0004252 ... P00735 1560020
    2979 1bbr:K (2.3) BS01 peptide 3.4.21.5 GO:0004252 ... P00735 1560020
    2980 1bbr:N (2.3) BS01 peptide 3.4.21.5 GO:0004252 ... P00735 1560020
    2981 1bbu:A (2.7) BS01 LYS 6.1.1.6 GO:0000049 ... P0A8N3 11041850
    2982 1bbx:C (-1.00) BS01 dna ? GO:0003677 ... P39476 9665172
    2983 1bbx:C (-1.00) BS02 dna ? GO:0003677 ... P39476 9665172
    2984 1bbx:D (-1.00) BS01 dna ? GO:0003677 ... P39476 9665172
    2985 1bbx:D (-1.00) BS02 dna ? GO:0003677 ... P39476 9665172
    2986 1bbz:A (1.65) BS01 peptide 2.7.10.2 N/A P00519 9698566
    2987 1bbz:A (1.65) BS02 peptide 2.7.10.2 N/A P00519 9698566
    2988 1bbz:C (1.65) BS01 peptide 2.7.10.2 N/A P00519 9698566
    2989 1bbz:E (1.65) BS01 peptide 2.7.10.2 N/A P00519 9698566
    2990 1bbz:E (1.65) BS02 peptide 2.7.10.2 N/A P00519 9698566
    2991 1bbz:G (1.65) BS01 peptide 2.7.10.2 N/A P00519 9698566
    2992 1bbz:G (1.65) BS02 peptide 2.7.10.2 N/A P00519 9698566
    2993 1bc0:A (2.0) BS01 CA ? GO:0001786 ... P14668 9609693
    2994 1bc0:A (2.0) BS02 CA ? GO:0001786 ... P14668 9609693
    2995 1bc0:A (2.0) BS03 CA ? GO:0001786 ... P14668 9609693
    2996 1bc0:A (2.0) BS04 CA ? GO:0001786 ... P14668 9609693
    2997 1bc0:A (2.0) BS05 CA ? GO:0001786 ... P14668 9609693
    2998 1bc1:A (2.05) BS01 CA ? GO:0001786 ... P14668 9609693
    2999 1bc1:A (2.05) BS02 CA ? GO:0001786 ... P14668 9609693
    3000 1bc1:A (2.05) BS03 CA ? GO:0001786 ... P14668 9609693

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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