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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    27601 1kvu:A (1.9) BS02 UPG 5.1.3.2 GO:0003978 ... P09147 9271498
    27602 1kvw:A (1.95) BS01 CA 3.1.1.4 GO:0002227 ... P00593 10089353
    27603 1kvx:A (1.9) BS01 CA 3.1.1.4 GO:0002227 ... P00593 10089353
    27604 1kvy:A (1.9) BS01 CA 3.1.1.4 GO:0002227 ... P00593 10089353
    27605 1kw0:A (2.5) BS01 FE2 1.14.16.1 GO:0004497 ... P00439 12126628
    27606 1kw0:A (2.5) BS02 H4B 1.14.16.1 GO:0004497 ... P00439 12126628
    27607 1kw0:A (2.5) BS03 TIH 1.14.16.1 GO:0004497 ... P00439 12126628
    27608 1kw1:A (2.2) BS01 MG 4.1.1.85 GO:0000287 ... P39304 11900527
    27609 1kw1:A (2.2) BS02 LG6 4.1.1.85 GO:0000287 ... P39304 11900527
    27610 1kw1:B (2.2) BS01 MG 4.1.1.85 GO:0000287 ... P39304 11900527
    27611 1kw1:B (2.2) BS02 LG6 4.1.1.85 GO:0000287 ... P39304 11900527
    27612 1kw3:B (1.45) BS01 FE2 1.13.11.39 GO:0003824 ... P17297 12206778
    27613 1kw6:B (1.45) BS01 FE2 1.13.11.39 GO:0003824 ... P17297 12206778
    27614 1kw6:B (1.45) BS02 BPY 1.13.11.39 GO:0003824 ... P17297 12206778
    27615 1kw8:B (2.0) BS01 FE2 1.13.11.39 GO:0003824 ... P17297 12206778
    27616 1kw8:B (2.0) BS02 NO 1.13.11.39 GO:0003824 ... P17297 12206778
    27617 1kw8:B (2.0) BS03 BPY 1.13.11.39 GO:0003824 ... P17297 12206778
    27618 1kw9:B (1.95) BS01 FE2 1.13.11.39 GO:0003824 ... P17297 12206778
    27619 1kw9:B (1.95) BS02 BPY 1.13.11.39 GO:0003824 ... P17297 12206778
    27620 1kwc:B (2.1) BS01 BPY 1.13.11.39 GO:0003824 ... P17297 12206778
    27621 1kwf:A (0.94) BS01 BGC 3.2.1.4 GO:0004553 ... A3DC29 11884144
    27622 1kwf:A (0.94) BS02 BGC 3.2.1.4 GO:0004553 ... A3DC29 11884144
    27623 1kwf:A (0.94) BS03 BGC 3.2.1.4 GO:0004553 ... A3DC29 11884144
    27624 1kwf:A (0.94) BS04 BGC 3.2.1.4 GO:0004553 ... A3DC29 11884144
    27625 1kwf:A (0.94) BS05 BGC 3.2.1.4 GO:0004553 ... A3DC29 11884144
    27626 1kwf:A (0.94) BS06 BGC 3.2.1.4 GO:0004553 ... A3DC29 11884144
    27627 1kwg:A (1.6) BS01 ZN 3.2.1.23 GO:0004565 ... O69315 12215416
    27628 1kwh:A (2.0) BS01 CA ? GO:0042597 ... Q9KWT5 11884143
    27629 1kwj:A (-1.00) BS01 HEC ? GO:0009055 ... P00137 11883773
    27630 1kwj:A (-1.00) BS02 HEC ? GO:0009055 ... P00137 11883773
    27631 1kwj:A (-1.00) BS03 HEC ? GO:0009055 ... P00137 11883773
    27632 1kwk:A (2.2) BS01 GAL 3.2.1.23 GO:0004565 ... O69315 12215416
    27633 1kwk:A (2.2) BS02 ZN 3.2.1.23 GO:0004565 ... O69315 12215416
    27634 1kwm:A (1.6) BS01 ZN 3.4.17.2 GO:0004180 ... P15086 12162965
    27635 1kwm:B (1.6) BS01 ZN 3.4.17.2 GO:0004180 ... P15086 12162965
    27636 1kwo:A (3.8) BS01 MG ? GO:0003774 ... P24733 12297624
    27637 1kwo:A (3.8) BS02 AGS ? GO:0003774 ... P24733 12297624
    27638 1kwo:A (3.8) BS03 PDM ? GO:0003774 ... P24733 12297624
    27639 1kwo:B (3.8) BS01 MG ? GO:0005509 ... P13543 12297624
    27640 1kwo:C (3.8) BS01 CA ? GO:0005509 ... P07291 12297624
    27641 1kwq:A (2.6) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 12166932
    27642 1kwq:A (2.6) BS02 SG1 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 12166932 PDBbind: -logKd/Ki=9.21, IC50=0.62nM
    BindingDB: IC50=0.62nM
    27643 1kwr:A (2.25) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 12166932
    27644 1kwr:A (2.25) BS02 SG2 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 12166932 MOAD: ic50=0.25uM
    PDBbind: -logKd/Ki=6.60, IC50=0.25uM
    BindingDB: IC50=245.5nM
    27645 1kws:A (2.1) BS01 MN 2.4.1.135 GO:0015018 ... O94766 11950836
    27646 1kws:A (2.1) BS02 UGA 2.4.1.135 GO:0015018 ... O94766 11950836
    27647 1kws:B (2.1) BS01 UGA 2.4.1.135 GO:0015018 ... O94766 11950836
    27648 1kwt:A (1.95) BS01 CA ? N/A P19999 11850428
    27649 1kwt:A (1.95) BS02 CA ? N/A P19999 11850428
    27650 1kwt:A (1.95) BS03 CA ? N/A P19999 11850428
    27651 1kwt:B (1.95) BS01 CA ? N/A P19999 11850428
    27652 1kwt:B (1.95) BS02 CA ? N/A P19999 11850428
    27653 1kwt:B (1.95) BS03 CA ? N/A P19999 11850428
    27654 1kwt:C (1.95) BS01 CA ? N/A P19999 11850428
    27655 1kwt:C (1.95) BS02 CA ? N/A P19999 11850428
    27656 1kwt:C (1.95) BS03 CA ? N/A P19999 11850428
    27657 1kwu:A (1.95) BS01 MMA ? N/A P19999 11850428
    27658 1kwu:A (1.95) BS02 CA ? N/A P19999 11850428
    27659 1kwu:A (1.95) BS03 CA ? N/A P19999 11850428
    27660 1kwu:A (1.95) BS04 CA ? N/A P19999 11850428
    27661 1kwu:B (1.95) BS01 MMA ? N/A P19999 11850428
    27662 1kwu:B (1.95) BS02 CA ? N/A P19999 11850428
    27663 1kwu:B (1.95) BS03 CA ? N/A P19999 11850428
    27664 1kwu:B (1.95) BS04 CA ? N/A P19999 11850428
    27665 1kwu:C (1.95) BS01 MMA ? N/A P19999 11850428
    27666 1kwu:C (1.95) BS02 CA ? N/A P19999 11850428
    27667 1kwu:C (1.95) BS03 CA ? N/A P19999 11850428
    27668 1kwu:C (1.95) BS04 CA ? N/A P19999 11850428
    27669 1kwv:A (2.0) BS01 CA ? N/A P19999 11850428
    27670 1kwv:A (2.0) BS02 CA ? N/A P19999 11850428
    27671 1kwv:A (2.0) BS03 CA ? N/A P19999 11850428
    27672 1kwv:B (2.0) BS01 CA ? N/A P19999 11850428
    27673 1kwv:B (2.0) BS02 CA ? N/A P19999 11850428
    27674 1kwv:B (2.0) BS03 CA ? N/A P19999 11850428
    27675 1kwv:C (2.0) BS01 CA ? N/A P19999 11850428
    27676 1kwv:C (2.0) BS02 CA ? N/A P19999 11850428
    27677 1kwv:C (2.0) BS03 CA ? N/A P19999 11850428
    27678 1kww:A (1.9) BS01 MFU ? N/A P19999 11850428
    27679 1kww:A (1.9) BS02 CA ? N/A P19999 11850428
    27680 1kww:A (1.9) BS03 CA ? N/A P19999 11850428
    27681 1kww:A (1.9) BS04 CA ? N/A P19999 11850428
    27682 1kww:B (1.9) BS01 MFU ? N/A P19999 11850428
    27683 1kww:B (1.9) BS02 CA ? N/A P19999 11850428
    27684 1kww:B (1.9) BS03 CA ? N/A P19999 11850428
    27685 1kww:B (1.9) BS04 CA ? N/A P19999 11850428
    27686 1kww:C (1.9) BS01 MFU ? N/A P19999 11850428
    27687 1kww:C (1.9) BS02 CA ? N/A P19999 11850428
    27688 1kww:C (1.9) BS03 CA ? N/A P19999 11850428
    27689 1kww:C (1.9) BS04 CA ? N/A P19999 11850428
    27690 1kwx:A (2.0) BS01 MFB ? N/A P19999 11850428
    27691 1kwx:A (2.0) BS02 CA ? N/A P19999 11850428
    27692 1kwx:A (2.0) BS03 CA ? N/A P19999 11850428
    27693 1kwx:A (2.0) BS04 CA ? N/A P19999 11850428
    27694 1kwx:B (2.0) BS01 MFB ? N/A P19999 11850428
    27695 1kwx:B (2.0) BS02 CA ? N/A P19999 11850428
    27696 1kwx:B (2.0) BS03 CA ? N/A P19999 11850428
    27697 1kwx:B (2.0) BS04 CA ? N/A P19999 11850428
    27698 1kwx:C (2.0) BS01 MFB ? N/A P19999 11850428
    27699 1kwx:C (2.0) BS02 CA ? N/A P19999 11850428
    27700 1kwx:C (2.0) BS03 CA ? N/A P19999 11850428
    27701 1kwx:C (2.0) BS04 CA ? N/A P19999 11850428
    27702 1kwy:A (2.0) BS01 MAN ? N/A P19999 11850428
    27703 1kwy:A (2.0) BS02 CA ? N/A P19999 11850428
    27704 1kwy:A (2.0) BS03 CA ? N/A P19999 11850428
    27705 1kwy:A (2.0) BS04 CA ? N/A P19999 11850428
    27706 1kwy:B (2.0) BS01 MAN ? N/A P19999 11850428
    27707 1kwy:B (2.0) BS02 CA ? N/A P19999 11850428
    27708 1kwy:B (2.0) BS03 CA ? N/A P19999 11850428
    27709 1kwy:B (2.0) BS04 CA ? N/A P19999 11850428
    27710 1kwy:C (2.0) BS01 MAN ? N/A P19999 11850428
    27711 1kwy:C (2.0) BS02 CA ? N/A P19999 11850428
    27712 1kwy:C (2.0) BS03 CA ? N/A P19999 11850428
    27713 1kwy:C (2.0) BS04 CA ? N/A P19999 11850428
    27714 1kwz:A (1.9) BS01 MAN ? N/A P19999 11850428
    27715 1kwz:A (1.9) BS02 CA ? N/A P19999 11850428
    27716 1kwz:A (1.9) BS03 CA ? N/A P19999 11850428
    27717 1kwz:A (1.9) BS04 CA ? N/A P19999 11850428
    27718 1kwz:B (1.9) BS01 MAN ? N/A P19999 11850428
    27719 1kwz:B (1.9) BS02 CA ? N/A P19999 11850428
    27720 1kwz:B (1.9) BS03 CA ? N/A P19999 11850428
    27721 1kwz:B (1.9) BS04 CA ? N/A P19999 11850428
    27722 1kwz:C (1.9) BS01 MAN ? N/A P19999 11850428
    27723 1kwz:C (1.9) BS02 CA ? N/A P19999 11850428
    27724 1kwz:C (1.9) BS03 CA ? N/A P19999 11850428
    27725 1kwz:C (1.9) BS04 CA ? N/A P19999 11850428
    27726 1kx0:A (2.0) BS01 MAN ? N/A P19999 11850428
    27727 1kx0:A (2.0) BS02 CA ? N/A P19999 11850428
    27728 1kx0:A (2.0) BS03 CA ? N/A P19999 11850428
    27729 1kx0:A (2.0) BS04 CA ? N/A P19999 11850428
    27730 1kx0:B (2.0) BS01 MAN ? N/A P19999 11850428
    27731 1kx0:B (2.0) BS02 CA ? N/A P19999 11850428
    27732 1kx0:B (2.0) BS03 CA ? N/A P19999 11850428
    27733 1kx0:B (2.0) BS04 CA ? N/A P19999 11850428
    27734 1kx0:C (2.0) BS01 MAN ? N/A P19999 11850428
    27735 1kx0:C (2.0) BS02 CA ? N/A P19999 11850428
    27736 1kx0:C (2.0) BS03 CA ? N/A P19999 11850428
    27737 1kx0:C (2.0) BS04 CA ? N/A P19999 11850428
    27738 1kx1:A (2.8) BS01 CA ? N/A P19999 11850428
    27739 1kx1:A (2.8) BS02 CA ? N/A P19999 11850428
    27740 1kx1:A (2.8) BS03 CA ? N/A P19999 11850428
    27741 1kx1:B (2.8) BS01 MAN ? N/A P19999 11850428
    27742 1kx1:B (2.8) BS02 CA ? N/A P19999 11850428
    27743 1kx1:B (2.8) BS03 CA ? N/A P19999 11850428
    27744 1kx1:B (2.8) BS04 CA ? N/A P19999 11850428
    27745 1kx1:C (2.8) BS01 MAN ? N/A P19999 11850428
    27746 1kx1:C (2.8) BS02 CA ? N/A P19999 11850428
    27747 1kx1:C (2.8) BS03 CA ? N/A P19999 11850428
    27748 1kx1:C (2.8) BS04 CA ? N/A P19999 11850428
    27749 1kx1:D (2.8) BS01 CA ? N/A P19999 11850428
    27750 1kx1:D (2.8) BS02 CA ? N/A P19999 11850428
    27751 1kx1:D (2.8) BS03 CA ? N/A P19999 11850428
    27752 1kx1:E (2.8) BS01 MAN ? N/A P19999 11850428
    27753 1kx1:E (2.8) BS02 CA ? N/A P19999 11850428
    27754 1kx1:E (2.8) BS03 CA ? N/A P19999 11850428
    27755 1kx1:E (2.8) BS04 CA ? N/A P19999 11850428
    27756 1kx1:F (2.8) BS01 MAN ? N/A P19999 11850428
    27757 1kx1:F (2.8) BS02 CA ? N/A P19999 11850428
    27758 1kx1:F (2.8) BS03 CA ? N/A P19999 11850428
    27759 1kx1:F (2.8) BS04 CA ? N/A P19999 11850428
    27760 1kx2:A (-1.00) BS01 HEC ? GO:0005506 ... O52685 11955059
    27761 1kx3:A (2.0) BS01 dna ? GO:0000786 ... P84233 12079350
    27762 1kx3:A (2.0) BS02 dna ? GO:0000786 ... P84233 12079350
    27763 1kx3:B (2.0) BS01 dna ? GO:0000786 ... P62799 12079350
    27764 1kx3:B (2.0) BS02 dna ? GO:0000786 ... P62799 12079350
    27765 1kx3:C (2.0) BS01 dna ? GO:0000786 ... P06897 12079350
    27766 1kx3:C (2.0) BS02 dna ? GO:0000786 ... P06897 12079350
    27767 1kx3:D (2.0) BS01 dna ? GO:0000786 ... P02281 12079350
    27768 1kx3:D (2.0) BS02 dna ? GO:0000786 ... P02281 12079350
    27769 1kx3:E (2.0) BS01 dna ? GO:0000786 ... P84233 12079350
    27770 1kx3:E (2.0) BS02 dna ? GO:0000786 ... P84233 12079350
    27771 1kx3:F (2.0) BS01 dna ? GO:0000786 ... P62799 12079350
    27772 1kx3:F (2.0) BS02 dna ? GO:0000786 ... P62799 12079350
    27773 1kx3:G (2.0) BS01 dna ? GO:0000786 ... P06897 12079350
    27774 1kx3:G (2.0) BS02 dna ? GO:0000786 ... P06897 12079350
    27775 1kx3:H (2.0) BS01 dna ? GO:0000786 ... P02281 12079350
    27776 1kx3:H (2.0) BS02 dna ? GO:0000786 ... P02281 12079350
    27777 1kx4:A (2.6) BS01 dna ? GO:0000786 ... P84233 12079350
    27778 1kx4:A (2.6) BS02 dna ? GO:0000786 ... P84233 12079350
    27779 1kx4:B (2.6) BS01 dna ? GO:0000786 ... P62799 12079350
    27780 1kx4:B (2.6) BS02 dna ? GO:0000786 ... P62799 12079350
    27781 1kx4:C (2.6) BS01 dna ? GO:0000786 ... P06897 12079350
    27782 1kx4:C (2.6) BS02 dna ? GO:0000786 ... P06897 12079350
    27783 1kx4:D (2.6) BS01 dna ? GO:0000786 ... P02281 12079350
    27784 1kx4:D (2.6) BS02 dna ? GO:0000786 ... P02281 12079350
    27785 1kx4:E (2.6) BS01 dna ? GO:0000786 ... P84233 12079350
    27786 1kx4:E (2.6) BS02 dna ? GO:0000786 ... P84233 12079350
    27787 1kx4:F (2.6) BS01 dna ? GO:0000786 ... P62799 12079350
    27788 1kx4:F (2.6) BS02 dna ? GO:0000786 ... P62799 12079350
    27789 1kx4:G (2.6) BS01 dna ? GO:0000786 ... P06897 12079350
    27790 1kx4:G (2.6) BS02 dna ? GO:0000786 ... P06897 12079350
    27791 1kx4:H (2.6) BS01 dna ? GO:0000786 ... P02281 12079350
    27792 1kx4:H (2.6) BS02 dna ? GO:0000786 ... P02281 12079350
    27793 1kx5:A (1.94) BS01 dna ? GO:0000786 ... P84233 12079350
    27794 1kx5:A (1.94) BS02 dna ? GO:0000786 ... P84233 12079350
    27795 1kx5:B (1.94) BS01 dna ? GO:0000786 ... P62799 12079350
    27796 1kx5:B (1.94) BS02 dna ? GO:0000786 ... P62799 12079350
    27797 1kx5:C (1.94) BS01 dna ? GO:0000786 ... P06897 12079350
    27798 1kx5:C (1.94) BS02 dna ? GO:0000786 ... P06897 12079350
    27799 1kx5:D (1.94) BS01 dna ? GO:0000786 ... P02281 12079350
    27800 1kx5:D (1.94) BS02 dna ? GO:0000786 ... P02281 12079350
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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