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BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    457201 8xvg:E (9.4) BS01 ADP N/A GO:0000492 ... Q9Y265 39154037
    457202 8xvg:F (9.4) BS01 ADP N/A GO:0000492 ... Q9Y230 39154037
    457203 8xvg:I (9.4) BS01 ADP N/A GO:0000723 ... O96019 39154037
    457204 8xvg:J (9.4) BS01 ADP N/A GO:0000723 ... O96019 39154037
    457205 8xvg:K (9.4) BS01 ADP N/A N/A A0A7K5XZZ2 39154037
    457206 8xvg:L (9.4) BS01 IHP N/A GO:0000124 ... Q9Y4A5 39154037
    457207 8xvj:R (3.26) BS01 A1D5I N/A N/A P0ABE7
    P16218
    P25101    		 39075075
    457208 8xvk:R (3.21) BS01 A1D5J N/A N/A P0ABE7
    P16218
    P25101    		 39075075
    457209 8xvl:R (3.22) BS01 A1D5L N/A N/A P0ABE7
    P16218
    P25101    		 39075075
    457210 8xvt:A (3.2) BS01 ADP N/A GO:0000492 ... Q9Y265 39154037
    457211 8xvt:B (3.2) BS01 ADP N/A GO:0000492 ... Q9Y230 39154037
    457212 8xvt:B (3.2) BS02 ADP N/A GO:0000492 ... Q9Y230 39154037
    457213 8xvt:C (3.2) BS01 ADP N/A GO:0000492 ... Q9Y265 39154037
    457214 8xvt:D (3.2) BS01 ADP N/A GO:0000492 ... Q9Y230 39154037
    457215 8xvt:E (3.2) BS01 ADP N/A GO:0000492 ... Q9Y265 39154037
    457216 8xvt:F (3.2) BS01 ADP N/A GO:0000492 ... Q9Y230 39154037
    457217 8xvt:I (3.2) BS01 ADP N/A GO:0000723 ... O96019 39154037
    457218 8xvt:J (3.2) BS01 ADP N/A GO:0000723 ... O96019 39154037
    457219 8xvt:K (3.2) BS01 ADP N/A GO:0000079 ... P60709 39154037
    457220 8xvv:L (3.2) BS01 IHP N/A GO:0000124 ... Q9Y4A5 39154037
    457221 8xw0:A (3.11) BS01 P5S ? GO:0000325 ... Q9C8G5 38570680
    457222 8xw0:A (3.11) BS02 P5S ? GO:0000325 ... Q9C8G5 38570680
    457223 8xw0:B (3.11) BS01 P5S ? GO:0000325 ... Q9C8G5 38570680
    457224 8xw0:B (3.11) BS02 P5S ? GO:0000325 ... Q9C8G5 38570680
    457225 8xw6:A (1.99) BS02 OXL N/A GO:0004743 ... Q8DQ84 39009072
    457226 8xw6:A (1.99) BS03 ATP N/A GO:0004743 ... Q8DQ84 39009072
    457227 8xw6:A (1.99) BS04 FBP N/A GO:0004743 ... Q8DQ84 39009072
    457228 8xw6:B (1.99) BS02 OXL N/A GO:0004743 ... Q8DQ84 39009072
    457229 8xw6:B (1.99) BS03 FBP N/A GO:0004743 ... Q8DQ84 39009072
    457230 8xw7:A (2.1) BS02 FBP N/A GO:0004743 ... Q8DQ84 39009072
    457231 8xw7:A (2.1) BS03 OXL N/A GO:0004743 ... Q8DQ84 39009072
    457232 8xw7:A (2.1) BS04 ADP N/A GO:0004743 ... Q8DQ84 39009072
    457233 8xw7:B (2.1) BS02 FBP N/A GO:0004743 ... Q8DQ84 39009072
    457234 8xw7:B (2.1) BS03 OXL N/A GO:0004743 ... Q8DQ84 39009072
    457235 8xw7:B (2.1) BS04 ADP N/A GO:0004743 ... Q8DQ84 39009072
    457236 8xw8:A (2.0) BS02 FBP N/A GO:0004743 ... Q8DQ84 39009072
    457237 8xw8:A (2.0) BS03 GDP N/A GO:0004743 ... Q8DQ84 39009072
    457238 8xw8:A (2.0) BS04 OXL N/A GO:0004743 ... Q8DQ84 39009072
    457239 8xw8:B (2.0) BS02 FBP N/A GO:0004743 ... Q8DQ84 39009072
    457240 8xw8:B (2.0) BS03 GDP N/A GO:0004743 ... Q8DQ84 39009072
    457241 8xw8:B (2.0) BS04 OXL N/A GO:0004743 ... Q8DQ84 39009072
    457242 8xw8:C (2.0) BS02 FBP N/A GO:0004743 ... Q8DQ84 39009072
    457243 8xw8:C (2.0) BS03 GDP N/A GO:0004743 ... Q8DQ84 39009072
    457244 8xw8:C (2.0) BS04 OXL N/A GO:0004743 ... Q8DQ84 39009072
    457245 8xw8:D (2.0) BS02 FBP N/A GO:0004743 ... Q8DQ84 39009072
    457246 8xw8:D (2.0) BS03 GDP N/A GO:0004743 ... Q8DQ84 39009072
    457247 8xw8:D (2.0) BS04 OXL N/A GO:0004743 ... Q8DQ84 39009072
    457248 8xw9:A (1.75) BS02 OXL N/A GO:0004743 ... Q8DQ84 39009072
    457249 8xw9:A (1.75) BS03 FBP N/A GO:0004743 ... Q8DQ84 39009072
    457250 8xw9:A (1.75) BS04 UDP N/A GO:0004743 ... Q8DQ84 39009072
    457251 8xw9:B (1.75) BS02 OXL N/A GO:0004743 ... Q8DQ84 39009072
    457252 8xw9:B (1.75) BS03 FBP N/A GO:0004743 ... Q8DQ84 39009072
    457253 8xxa:A (1.55) BS01 BGC 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    457254 8xxa:A (1.55) BS02 GLC 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    457255 8xxa:A (1.55) BS03 GLC 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    457256 8xxa:A (1.55) BS04 GLC 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    457257 8xxa:A (1.55) BS05 GLC 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    457258 8xxa:A (1.55) BS06 GLC 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    457259 8xxa:A (1.55) BS07 GLC 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    457260 8xy7:A (2.9) BS01 FAR ? GO:0004689 ... P46020 38548794
    457261 8xya:A (2.7) BS01 FAR ? GO:0004689 ... P46020 38548794
    457262 8xya:B (2.7) BS01 FAR ? GO:0005515 ... Q93100 38548794
    457263 8xyb:A (3.1) BS01 FAR ? GO:0004689 ... P46020 38548794
    457264 8xyn:A (2.3) BS01 A1LXX N/A N/A N/A 38597773
    457265 8xyn:A (2.3) BS02 A1LXX N/A N/A N/A 38597773
    457266 8xyn:B (2.3) BS01 A1LXX N/A N/A N/A 38597773
    457267 8xz7:A (1.75) BS01 A1LWW N/A N/A P11362 38870833
    457268 8xz7:B (1.75) BS01 A1LWW N/A N/A P11362 38870833
    457269 8xzi:R (2.7) BS01 A1D5N ? GO:0001525 ... P35414 38428423
    457270 8y0p:A (2.62) BS02 PRO ? GO:0007155 ... P35222 N/A
    457271 8y0p:A (2.62) BS03 PRO ? GO:0007155 ... P35222 N/A
    457272 8y0p:B (2.62) BS01 PRO ? GO:0007155 ... P35222 N/A
    457273 8y0s:B () BS04 A1LXO N/A N/A N/A N/A
    457274 8y11:A (1.77) BS01 NAD N/A N/A A0AAE4G800 38918500
    457275 8y11:B (1.77) BS01 NAD N/A N/A A0AAE4G800 38918500
    457276 8y11:D (1.77) BS01 NAD N/A N/A A0AAE4G800 38918500
    457277 8y1j:A (2.3) BS01 2KT 4.3.1.19 GO:0003941 ... Q9I6G0 38417345
    457278 8y1j:A (2.3) BS02 2KT 4.3.1.19 GO:0003941 ... Q9I6G0 38417345
    457279 8y1j:B (2.3) BS01 2KT 4.3.1.19 GO:0003941 ... Q9I6G0 38417345
    457280 8y1m:A (1.8) BS01 XYP 3.2.1.8 GO:0005576 ... P07528 38565938
    457281 8y1m:A (1.8) BS02 XYP 3.2.1.8 GO:0005576 ... P07528 38565938
    457282 8y1m:A (1.8) BS03 XYP 3.2.1.8 GO:0005576 ... P07528 38565938
    457283 8y1m:A (1.8) BS04 XYP 3.2.1.8 GO:0005576 ... P07528 38565938
    457284 8y1m:B (1.8) BS01 XYP 3.2.1.8 GO:0005576 ... P07528 38565938
    457285 8y1m:B (1.8) BS02 XYP 3.2.1.8 GO:0005576 ... P07528 38565938
    457286 8y1m:B (1.8) BS03 XYP 3.2.1.8 GO:0005576 ... P07528 38565938
    457287 8y1m:B (1.8) BS04 XYP 3.2.1.8 GO:0005576 ... P07528 38565938
    457288 8y22:A (2.792) BS01 A1LW9 N/A N/A P11362 38870833
    457289 8y22:B (2.792) BS01 A1LW9 N/A N/A P11362 38870833
    457290 8y2d:A (2.8) BS01 LDP N/A N/A Q01959 39112701
    457291 8y2e:A (3.03) BS01 CXQ N/A N/A Q01959 39112701
    457292 8y2f:A (2.97) BS01 A1D5S N/A N/A Q01959 39112701
    457293 8y2g:A (2.83) BS01 A1D5U N/A N/A Q01959 39112701
    457294 8y2h:B (3.3) BS03 ATP 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    457295 8y2h:F (3.3) BS03 ATP 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    457296 8y2h:G (3.3) BS03 ATP 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    457297 8y2h:H (3.3) BS03 ATP 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    457298 8y2s:A (2.0) BS01 A1LXW 1.14.13.2 GO:0000166 ... A0A233TK29 N/A
    457299 8y2s:A (2.0) BS02 FAD 1.14.13.2 GO:0000166 ... A0A233TK29 N/A
    457300 8y33:A (2.9) BS01 V8U N/A GO:0015979 ... N/A 38552148
    457301 8y3x:A (3.11) BS01 ATP ? GO:0000917 ... P0A9R7 38814940
    457302 8y3x:A (3.11) BS02 ATP ? GO:0000917 ... P0A9R7 38814940
    457303 8y3x:B (3.11) BS01 ATP ? GO:0000917 ... P0A9R7 38814940
    457304 8y3x:B (3.11) BS02 ATP ? GO:0000917 ... P0A9R7 38814940
    457305 8y46:A (1.29) BS01 A1LXA N/A N/A N/A 38918500
    457306 8y46:B (1.29) BS01 A1LXB N/A N/A N/A 38918500
    457307 8y46:D (1.29) BS01 A1LXA N/A N/A N/A 38918500
    457308 8y4b:A (1.67) BS01 NAD N/A N/A N/A 38918500
    457309 8y4b:B (1.67) BS01 NAD N/A N/A N/A 38918500
    457310 8y4b:C (1.67) BS01 NAD N/A N/A N/A 38918500
    457311 8y4b:D (1.67) BS01 NAD N/A N/A N/A 38918500
    457312 8y4b:D (1.67) BS02 A1LXB N/A N/A N/A 38918500
    457313 8y4j:A (1.51) BS01 A1LXD N/A GO:0016491 ... A0AAE4G800 38918500
    457314 8y4j:C (1.51) BS01 A1LXD N/A GO:0016491 ... A0AAE4G800 38918500
    457315 8y4j:D (1.51) BS01 A1LXD N/A GO:0016491 ... A0AAE4G800 38918500
    457316 8y53:R (2.93) BS01 A1D54 N/A N/A P32247 39024101
    457317 8y5v:A (1.54) BS01 FUC N/A N/A K4LM89 N/A
    457318 8y65:A (3.51) BS01 URC N/A GO:0005351 ... Q9NRM0 38866775
    457319 8y66:A (3.28) BS01 AGI N/A GO:0005351 ... Q9NRM0 38866775
    457320 8y6a:D (2.72) BS01 MAN N/A N/A N/A 39013463
    457321 8y6c:A (1.47) BS01 FUC N/A N/A Q5F4T5 N/A
    457322 8y6c:A (1.47) BS02 GLC N/A N/A Q5F4T5 N/A
    457323 8y6c:A (1.47) BS03 FUC N/A N/A Q5F4T5 N/A
    457324 8y6c:A (1.47) BS04 GAL N/A N/A Q5F4T5 N/A
    457325 8y6c:A (1.47) BS05 FUC N/A N/A Q5F4T5 N/A
    457326 8y6c:B (1.47) BS01 GLC N/A N/A Q5F4T5 N/A
    457327 8y6c:B (1.47) BS02 FUC N/A N/A Q5F4T5 N/A
    457328 8y6c:B (1.47) BS03 FUC N/A N/A Q5F4T5 N/A
    457329 8y6d:A (1.41) BS01 FUC N/A N/A Q5F4T5 N/A
    457330 8y6d:B (1.41) BS01 GLC N/A N/A Q5F4T5 N/A
    457331 8y6h:A (2.49) BS01 R0Z 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    457332 8y6h:A (2.49) BS02 R0Z 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    457333 8y6h:A (2.49) BS03 R0Z 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    457334 8y6i:A (2.54) BS01 CLR 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    457335 8y6i:A (2.54) BS02 CLR 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    457336 8y6i:A (2.54) BS03 CLR 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    457337 8y6i:A (2.54) BS04 CLR 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    457338 8y6i:A (2.54) BS05 CLR 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    457339 8y6i:A (2.54) BS06 CLR 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    457340 8y6i:A (2.54) BS07 CLR 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    457341 8y6i:A (2.54) BS08 R0Z 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    457342 8y6i:A (2.54) BS09 R0Z 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    457343 8y6i:A (2.54) BS10 R0Z 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    457344 8y6k:A (3.94) BS03 FAD N/A N/A Q8TDZ2 39122694
    457345 8y6o:C (3.38) BS03 IHP ? GO:0000244 ... Q6P2Q9 38484052
    457346 8y6o:D (3.38) BS01 GTP ? GO:0000398 ... Q15029 38484052
    457347 8y7g:A (3.15) BS03 ACT N/A N/A A0A0H2SHM8 38967023
    457348 8y7g:B (3.15) BS03 ACT N/A N/A A0A0H2SHM8 38967023
    457349 8y7l:B (2.683) BS01 A1D59 N/A N/A P22736 N/A
    457350 8y7y:A (3.24) BS01 MJJ N/A GO:0016020 ... Q5MQD0 38964329
    457351 8y81:B (2.89) BS01 Y01 N/A GO:0005768 ... P13386 39169187
    457352 8y83:A (2.0) BS01 NAD ? N/A A0A562MSV3 N/A
    457353 8y83:B (2.0) BS01 NAD ? N/A A0A562MSV3 N/A
    457354 8y84:A (2.98) BS01 Y01 N/A N/A P12371 39169187
    457355 8y84:B (2.98) BS01 Y01 N/A GO:0005768 ... P13386 39169187
    457356 8y85:A (2.73) BS01 BCT N/A GO:0005452 ... P48751 39033175
    457357 8y85:A (2.73) BS02 4KU N/A GO:0005452 ... P48751 39033175
    457358 8y85:B (2.73) BS01 4KU N/A GO:0005452 ... P48751 39033175
    457359 8y86:A (2.75) BS01 BCT N/A GO:0005452 ... P48751 39033175
    457360 8y8b:A (3.01) BS01 MJJ N/A GO:0016020 ... Q0ZME7 38964329
    457361 8y8j:A (3.57) BS01 MJJ N/A GO:0016020 ... Q0ZME7 38964329
    457362 8y8z:A (3.29) BS01 A1LX3 ? GO:0003779 ... P23975 38750358
    457363 8y8z:E (3.29) BS01 A1LX3 ? GO:0003779 ... P23975 38750358
    457364 8y90:A (3.15) BS01 A1LX6 ? GO:0003779 ... P23975 38750358
    457365 8y91:A (3.13) BS01 A1LX5 ? GO:0003779 ... P23975 38750358
    457366 8y91:D (3.13) BS01 A1LX5 ? GO:0003779 ... P23975 38750358
    457367 8y92:A (3.29) BS01 A1LX4 ? GO:0003779 ... P23975 38750358
    457368 8y92:B (3.29) BS01 A1LX4 ? GO:0003779 ... P23975 38750358
    457369 8y93:A (3.0) BS01 TP0 ? GO:0003779 ... P23975 38750358
    457370 8y95:A (3.24) BS01 E5E ? GO:0003779 ... P23975 38750358
    457371 8y95:D (3.24) BS01 E5E ? GO:0003779 ... P23975 38750358
    457372 8y9p:A (1.64) BS01 A3P ? N/A A0A6G7MAL8 38621346
    457373 8y9x:A (2.0) BS01 HEM 1.11.1.7 GO:0004601 ... P80025 N/A
    457374 8ya7:A (1.99) BS01 X6Y ? N/A A0A1B1Y779 N/A
    457375 8ya7:A (1.99) BS02 X6Y ? N/A A0A1B1Y779 N/A
    457376 8ya7:A (1.99) BS03 X2Y ? N/A A0A1B1Y779 N/A
    457377 8ybe:A (2.3) BS01 GLC ? GO:0005515 ... P0AEX9 N/A
    457378 8ybe:A (2.3) BS02 GLC ? GO:0005515 ... P0AEX9 N/A
    457379 8ybq:A (2.59) BS01 CHT N/A N/A N/A 39141726
    457380 8ybq:B (2.59) BS01 CHT N/A N/A N/A 39141726
    457381 8ybq:C (2.59) BS01 CHT N/A N/A N/A 39141726
    457382 8yc0:m (4.12) BS02 CLR ? GO:0002250 ... A0JD36
    B7Z8K6    		 38657677
    457383 8yd3:A (1.96) BS02 A1LYN N/A N/A P00441 N/A
    457384 8yd3:C (1.96) BS02 A1LYN N/A N/A P00441 N/A
    457385 8yd3:D (1.96) BS01 A1LYN N/A N/A P00441 N/A
    457386 8yd3:H (1.96) BS02 A1LYN N/A N/A P00441 N/A
    457387 8yd3:I (1.96) BS02 A1LYN N/A N/A P00441 N/A
    457388 8ye0:A (1.94) BS01 PIS N/A GO:0016740 ... A0A551Z2V8 38837490
    457389 8ye0:B (1.94) BS01 PIS N/A GO:0016740 ... A0A551Z2V8 38837490
    457390 8ye0:C (1.94) BS01 PIS N/A GO:0016740 ... A0A551Z2V8 38837490
    457391 8ye0:D (1.94) BS01 PIS N/A GO:0016740 ... A0A551Z2V8 38837490
    457392 8yej:A (2.86) BS01 RET N/A N/A L1K1K8 39232582
    457393 8yek:A (2.73) BS01 RET N/A N/A L1K1K8 39232582
    457394 8yel:A (2.71) BS01 RET N/A N/A A0A3G1I4H9 39232582
    457395 8yf1:A (3.38) BS01 VLX ? GO:0005783 ... Q7L0J3 N/A
    457396 8yf1:B (3.38) BS01 VLX ? GO:0005783 ... Q7L0J3 N/A
    457397 8yge:A (2.76) BS03 ASW N/A N/A A0A0C5B080 39166497
    457398 8yge:B (2.76) BS03 ASW N/A N/A A0A0C5B080 39166497
    457399 8ygw:A (3.301) BS01 B96 2.7.11.24 GO:0000165 ... Q15759 N/A
    457400 8ygy:A (2.401) BS01 FUC 3.4.21.35 GO:0003073 ... P06870 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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