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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    198601 5b66:O (1.85) BS01 CA ? GO:0009523 ... D0VWR2 28102667
    198602 5b66:V (1.85) BS01 HEC ? GO:0005506 ... P0A387 28102667
    198603 5b66:X (1.85) BS01 CLA ? GO:0009523 ... D0VWR4 28102667
    198604 5b66:Z (1.85) BS01 peptide ? GO:0009523 ... D0VWR5 28102667
    198605 5b66:Z (1.85) BS02 CLA ? GO:0009523 ... D0VWR5 28102667
    198606 5b66:a (1.85) BS01 CLA 1.10.3.9 GO:0005506 ... P51765 28102667
    198607 5b66:a (1.85) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 28102667
    198608 5b66:a (1.85) BS03 PHO 1.10.3.9 GO:0005506 ... P51765 28102667
    198609 5b66:a (1.85) BS04 PHO 1.10.3.9 GO:0005506 ... P51765 28102667
    198610 5b66:a (1.85) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 28102667
    198611 5b66:a (1.85) BS06 BCT 1.10.3.9 GO:0005506 ... P51765 28102667
    198612 5b66:a (1.85) BS07 FE2 1.10.3.9 GO:0005506 ... P51765 28102667
    198613 5b66:a (1.85) BS08 OEX 1.10.3.9 GO:0005506 ... P51765 28102667
    198614 5b66:a (1.85) BS09 CLA 1.10.3.9 GO:0005506 ... P51765 28102667
    198615 5b66:a (1.85) BS10 CLA 1.10.3.9 GO:0005506 ... P51765 28102667
    198616 5b66:b (1.85) BS01 CLA ? GO:0009521 ... D0VWR1 28102667
    198617 5b66:b (1.85) BS02 CLA ? GO:0009521 ... D0VWR1 28102667
    198618 5b66:b (1.85) BS03 CLA ? GO:0009521 ... D0VWR1 28102667
    198619 5b66:b (1.85) BS04 CLA ? GO:0009521 ... D0VWR1 28102667
    198620 5b66:b (1.85) BS05 CLA ? GO:0009521 ... D0VWR1 28102667
    198621 5b66:b (1.85) BS06 CLA ? GO:0009521 ... D0VWR1 28102667
    198622 5b66:b (1.85) BS07 CLA ? GO:0009521 ... D0VWR1 28102667
    198623 5b66:b (1.85) BS08 CLA ? GO:0009521 ... D0VWR1 28102667
    198624 5b66:b (1.85) BS09 CLA ? GO:0009521 ... D0VWR1 28102667
    198625 5b66:b (1.85) BS10 CLA ? GO:0009521 ... D0VWR1 28102667
    198626 5b66:b (1.85) BS11 CLA ? GO:0009521 ... D0VWR1 28102667
    198627 5b66:b (1.85) BS12 CLA ? GO:0009521 ... D0VWR1 28102667
    198628 5b66:b (1.85) BS13 CLA ? GO:0009521 ... D0VWR1 28102667
    198629 5b66:b (1.85) BS14 CLA ? GO:0009521 ... D0VWR1 28102667
    198630 5b66:b (1.85) BS15 CLA ? GO:0009521 ... D0VWR1 28102667
    198631 5b66:b (1.85) BS16 CLA ? GO:0009521 ... D0VWR1 28102667
    198632 5b66:c (1.85) BS01 OEX ? GO:0005737 ... D0VWR7 28102667
    198633 5b66:c (1.85) BS02 CLA ? GO:0005737 ... D0VWR7 28102667
    198634 5b66:c (1.85) BS03 CLA ? GO:0005737 ... D0VWR7 28102667
    198635 5b66:c (1.85) BS04 CLA ? GO:0005737 ... D0VWR7 28102667
    198636 5b66:c (1.85) BS05 CLA ? GO:0005737 ... D0VWR7 28102667
    198637 5b66:c (1.85) BS06 CLA ? GO:0005737 ... D0VWR7 28102667
    198638 5b66:c (1.85) BS07 CLA ? GO:0005737 ... D0VWR7 28102667
    198639 5b66:c (1.85) BS08 CLA ? GO:0005737 ... D0VWR7 28102667
    198640 5b66:c (1.85) BS09 CLA ? GO:0005737 ... D0VWR7 28102667
    198641 5b66:c (1.85) BS10 CLA ? GO:0005737 ... D0VWR7 28102667
    198642 5b66:c (1.85) BS11 CLA ? GO:0005737 ... D0VWR7 28102667
    198643 5b66:c (1.85) BS12 CLA ? GO:0005737 ... D0VWR7 28102667
    198644 5b66:c (1.85) BS13 CLA ? GO:0005737 ... D0VWR7 28102667
    198645 5b66:c (1.85) BS14 CLA ? GO:0005737 ... D0VWR7 28102667
    198646 5b66:c (1.85) BS15 CA ? GO:0005737 ... D0VWR7 28102667
    198647 5b66:d (1.85) BS01 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28102667
    198648 5b66:d (1.85) BS02 PHO 1.10.3.9 GO:0009523 ... D0VWR8 28102667
    198649 5b66:d (1.85) BS03 PHO 1.10.3.9 GO:0009523 ... D0VWR8 28102667
    198650 5b66:d (1.85) BS04 BCT 1.10.3.9 GO:0009523 ... D0VWR8 28102667
    198651 5b66:d (1.85) BS05 FE2 1.10.3.9 GO:0009523 ... D0VWR8 28102667
    198652 5b66:d (1.85) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28102667
    198653 5b66:d (1.85) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28102667
    198654 5b66:d (1.85) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28102667
    198655 5b66:d (1.85) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28102667
    198656 5b66:e (1.85) BS01 HEM ? GO:0005506 ... P12238 28102667
    198657 5b66:f (1.85) BS01 HEM ? GO:0005506 ... P12239 28102667
    198658 5b66:h (1.85) BS01 CLA ? GO:0009523 ... P19052 28102667
    198659 5b66:h (1.85) BS02 CLA ? GO:0009523 ... P19052 28102667
    198660 5b66:h (1.85) BS03 CLA ? GO:0009523 ... P19052 28102667
    198661 5b66:h (1.85) BS04 RRX ? GO:0009523 ... P19052 28102667
    198662 5b66:i (1.85) BS01 CLA ? GO:0005737 ... P12240 28102667
    198663 5b66:j (1.85) BS01 MG ? GO:0009523 ... Q7DGD4 28102667
    198664 5b66:k (1.85) BS01 peptide ? GO:0005737 ... P19054 28102667
    198665 5b66:k (1.85) BS02 CLA ? GO:0005737 ... P19054 28102667
    198666 5b66:k (1.85) BS03 CLA ? GO:0005737 ... P19054 28102667
    198667 5b66:o (1.85) BS01 CA ? GO:0009523 ... D0VWR2 28102667
    198668 5b66:v (1.85) BS01 HEC ? GO:0005506 ... P0A387 28102667
    198669 5b66:x (1.85) BS01 CLA ? GO:0009523 ... D0VWR4 28102667
    198670 5b66:x (1.85) BS02 RRX ? GO:0009523 ... D0VWR4 28102667
    198671 5b66:z (1.85) BS01 peptide ? GO:0009523 ... D0VWR5 28102667
    198672 5b66:z (1.85) BS02 CLA ? GO:0009523 ... D0VWR5 28102667
    198673 5b6a:A (2.0) BS01 PO4 2.7.1.35 GO:0000287 ... Q9HT57 27425248
    198674 5b6b:A (3.536) BS01 ZN ? GO:0005634 ... Q8BPB0 27335147
    198675 5b6b:B (3.536) BS01 ZN ? GO:0005634 ... Q8BPB0 27335147
    198676 5b6b:D (3.536) BS01 ZN ? GO:0005634 ... Q8BPB0 27335147
    198677 5b6b:F (3.536) BS01 ZN ? GO:0005634 ... Q8BPB0 27335147
    198678 5b6b:H (3.536) BS01 ZN ? GO:0005634 ... Q8BPB0 27335147
    198679 5b6b:K (3.536) BS01 ZN ? GO:0005634 ... Q8BPB0 27335147
    198680 5b6b:M (3.536) BS01 ZN ? GO:0005634 ... Q8BPB0 27335147
    198681 5b6b:O (3.536) BS01 ZN ? GO:0005634 ... Q8BPB0 27335147
    198682 5b6d:A (1.65) BS01 C5P ? GO:0004799 ... B4Y380 28000775
    198683 5b6d:A (1.65) BS02 C5P ? GO:0004799 ... B4Y380 28000775
    198684 5b6d:B (1.65) BS01 C5P ? GO:0004799 ... B4Y380 28000775
    198685 5b6d:B (1.65) BS02 C5P ? GO:0004799 ... B4Y380 28000775
    198686 5b6e:A (1.8) BS01 5HM ? GO:0004799 ... B4Y380 28000775
    198687 5b6e:A (1.8) BS02 5HM ? GO:0004799 ... B4Y380 28000775
    198688 5b6e:B (1.8) BS01 5HM ? GO:0004799 ... B4Y380 28000775
    198689 5b6e:B (1.8) BS02 5HM ? GO:0004799 ... B4Y380 28000775
    198690 5b6h:A (1.9) BS01 AMP 2.4.2.7 GO:0003999 ... Q66DQ2 N/A
    198691 5b6l:A (2.801) BS01 peptide ? GO:0004252 ... P72780 27616292
    198692 5b6v:A (2.0) BS01 RET ? GO:0005216 ... P02945 28008064
    198693 5b6w:A (2.1) BS01 RET ? GO:0005216 ... P02945 28008064
    198694 5b6x:A (2.1) BS01 RET ? GO:0005216 ... P02945 28008064
    198695 5b6y:A (2.1) BS01 RET ? GO:0005216 ... P02945 28008064
    198696 5b6z:A (2.1) BS01 RET ? GO:0005216 ... P02945 28008064
    198697 5b7b:A (3.0) BS01 NUZ ? GO:0003723 ... P15682 27404920
    198698 5b7b:C (3.0) BS01 NUZ ? GO:0003723 ... P15682 27404920
    198699 5b7b:D (3.0) BS01 NUZ ? GO:0003723 ... P15682 27404920
    198700 5b7f:A (1.45) BS01 CU 1.16.3.4 GO:0004322 ... P36649 27710945
    198701 5b7f:A (1.45) BS02 CU 1.16.3.4 GO:0004322 ... P36649 27710945
    198702 5b7f:A (1.45) BS03 CU 1.16.3.4 GO:0004322 ... P36649 27710945
    198703 5b7f:A (1.45) BS04 CU 1.16.3.4 GO:0004322 ... P36649 27710945
    198704 5b7g:A (1.399) BS01 ADE 3.2.2.16
    3.2.2.9    		 GO:0003824 ... A0KGU9 28862845
    198705 5b7g:B (1.399) BS01 ADE 3.2.2.16
    3.2.2.9    		 GO:0003824 ... A0KGU9 28862845
    198706 5b7m:A (1.8) BS01 CU 1.16.3.4 GO:0004322 ... P36649 27710945
    198707 5b7m:A (1.8) BS02 CU 1.16.3.4 GO:0004322 ... P36649 27710945
    198708 5b7m:A (1.8) BS03 CU 1.16.3.4 GO:0004322 ... P36649 27710945
    198709 5b7m:A (1.8) BS04 CU 1.16.3.4 GO:0004322 ... P36649 27710945
    198710 5b7m:B (1.8) BS01 CU 1.16.3.4 GO:0004322 ... P36649 27710945
    198711 5b7m:B (1.8) BS02 CU 1.16.3.4 GO:0004322 ... P36649 27710945
    198712 5b7m:B (1.8) BS03 CU 1.16.3.4 GO:0004322 ... P36649 27710945
    198713 5b7m:B (1.8) BS04 CU 1.16.3.4 GO:0004322 ... P36649 27710945
    198714 5b7m:C (1.8) BS01 CU 1.16.3.4 GO:0004322 ... P36649 27710945
    198715 5b7m:C (1.8) BS02 CU 1.16.3.4 GO:0004322 ... P36649 27710945
    198716 5b7m:C (1.8) BS03 CU 1.16.3.4 GO:0004322 ... P36649 27710945
    198717 5b7m:C (1.8) BS04 CU 1.16.3.4 GO:0004322 ... P36649 27710945
    198718 5b7n:A (1.399) BS01 SAH 3.2.2.16
    3.2.2.9    		 GO:0003824 ... A0KGU9 28862845
    198719 5b7n:B (1.399) BS01 SAH 3.2.2.16
    3.2.2.9    		 GO:0003824 ... A0KGU9 28862845
    198720 5b7p:A (1.49) BS01 MTA 3.2.2.16
    3.2.2.9    		 GO:0003824 ... A0KGU9 28862845
    198721 5b7p:B (1.49) BS01 MTA 3.2.2.16
    3.2.2.9    		 GO:0003824 ... A0KGU9 28862845
    198722 5b7x:A (-1.00) BS01 CA ? GO:0005509 ... M7WXJ8 N/A
    198723 5b7x:A (-1.00) BS02 CA ? GO:0005509 ... M7WXJ8 N/A
    198724 5b84:A (1.61) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 27476534
    198725 5b85:A (1.85) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 27476534
    198726 5b8h:A (2.1999) BS01 2PN 2.7.1.33 GO:0004594 ... B4E9P3 N/A
    198727 5b8h:A (2.1999) BS02 PAU 2.7.1.33 GO:0004594 ... B4E9P3 N/A
    198728 5b8h:A (2.1999) BS03 AMP 2.7.1.33 GO:0004594 ... B4E9P3 N/A
    198729 5b8h:A (2.1999) BS04 PAU 2.7.1.33 GO:0004594 ... B4E9P3 N/A
    198730 5b8h:B (2.1999) BS01 PAU 2.7.1.33 GO:0004594 ... B4E9P3 N/A
    198731 5b8h:B (2.1999) BS02 2PN 2.7.1.33 GO:0004594 ... B4E9P3 N/A
    198732 5b8h:B (2.1999) BS03 PAU 2.7.1.33 GO:0004594 ... B4E9P3 N/A
    198733 5b8i:C (1.85) BS01 FK5 5.2.1.8 GO:0000413 ... J3K5Z5 31537789
    198734 5bir:A (2.0) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 9466938 MOAD: Kd=255uM
    198735 5bir:B (2.0) BS01 CA 4.6.1.24 GO:0001411 ... P00651 9466938
    198736 5bir:B (2.0) BS02 2GP 4.6.1.24 GO:0001411 ... P00651 9466938 MOAD: Kd=255uM
    198737 5bj3:A (2.2) BS01 PLP 2.6.1.1
    2.6.1.78    		 GO:0003824 ... Q56232 11432784
    198738 5bj3:B (2.2) BS01 PLP 2.6.1.1
    2.6.1.78    		 GO:0003824 ... Q56232 11432784
    198739 5bj3:C (2.2) BS01 PLP 2.6.1.1
    2.6.1.78    		 GO:0003824 ... Q56232 11432784
    198740 5bj3:D (2.2) BS01 PLP 2.6.1.1
    2.6.1.78    		 GO:0003824 ... Q56232 11432784
    198741 5bj4:A (2.0) BS01 PLP 2.6.1.1
    2.6.1.78    		 GO:0003824 ... Q56232 11432784
    198742 5bj4:B (2.0) BS01 PLP 2.6.1.1
    2.6.1.78    		 GO:0003824 ... Q56232 11432784
    198743 5bk2:A (2.6) BS01 GLC ? GO:0005515 ... P0AEX9 29321208
    198744 5bk2:A (2.6) BS02 GLC ? GO:0005515 ... P0AEX9 29321208
    198745 5bk2:B (2.6) BS01 GLC ? GO:0005515 ... P0AEX9 29321208
    198746 5bk2:B (2.6) BS02 GLC ? GO:0005515 ... P0AEX9 29321208
    198747 5bk4:2 (3.9) BS01 ADP 3.6.4.12 GO:0000727 ... P29469 29078375
    198748 5bk4:3 (3.9) BS01 ADP 3.6.4.12 GO:0000727 ... P24279 29078375
    198749 5bk4:3 (3.9) BS02 ADP 3.6.4.12 GO:0000727 ... P24279 29078375
    198750 5bk4:4 (3.9) BS01 dna 3.6.4.12 GO:0000727 ... P30665 29078375
    198751 5bk4:5 (3.9) BS01 ADP 3.6.4.12 GO:0000727 ... P29496 29078375
    198752 5bk4:5 (3.9) BS02 ADP 3.6.4.12 GO:0000727 ... P29496 29078375
    198753 5bk4:7 (3.9) BS01 dna 3.6.4.12 GO:0000727 ... P38132 29078375
    198754 5bk4:7 (3.9) BS02 ADP 3.6.4.12 GO:0000727 ... P38132 29078375
    198755 5bk4:A (3.9) BS01 ADP 3.6.4.12 GO:0000727 ... P29469 29078375
    198756 5bk4:B (3.9) BS01 dna 3.6.4.12 GO:0000727 ... P24279 29078375
    198757 5bk4:B (3.9) BS02 ADP 3.6.4.12 GO:0000727 ... P24279 29078375
    198758 5bk4:B (3.9) BS03 ADP 3.6.4.12 GO:0000727 ... P24279 29078375
    198759 5bk4:C (3.9) BS01 dna 3.6.4.12 GO:0000727 ... P30665 29078375
    198760 5bk4:C (3.9) BS02 dna 3.6.4.12 GO:0000727 ... P30665 29078375
    198761 5bk4:D (3.9) BS01 dna 3.6.4.12 GO:0000727 ... P29496 29078375
    198762 5bk4:D (3.9) BS02 ADP 3.6.4.12 GO:0000727 ... P29496 29078375
    198763 5bk4:D (3.9) BS03 ADP 3.6.4.12 GO:0000727 ... P29496 29078375
    198764 5bk4:F (3.9) BS01 dna 3.6.4.12 GO:0000727 ... P38132 29078375
    198765 5bk4:F (3.9) BS02 ADP 3.6.4.12 GO:0000727 ... P38132 29078375
    198766 5bk9:A (1.51) BS01 VVO 1.14.11.44 GO:0005737 ... P83310 31209034
    198767 5bk9:B (1.51) BS01 VVO 1.14.11.44 GO:0005737 ... P83310 31209034
    198768 5bkb:A (1.582) BS01 MN 1.14.11.44 GO:0005737 ... P83310 31209034
    198769 5bkb:A (1.582) BS02 AKG 1.14.11.44 GO:0005737 ... P83310 31209034
    198770 5bkb:A (1.582) BS03 FTV 1.14.11.44 GO:0005737 ... P83310 31209034
    198771 5bkb:B (1.582) BS01 MN 1.14.11.44 GO:0005737 ... P83310 31209034
    198772 5bkb:B (1.582) BS02 AKG 1.14.11.44 GO:0005737 ... P83310 31209034
    198773 5bkc:A (1.8) BS01 MN 1.14.11.44 GO:0005737 ... P83310 31209034
    198774 5bkc:A (1.8) BS02 AKG 1.14.11.44 GO:0005737 ... P83310 31209034
    198775 5bkc:A (1.8) BS03 O0D 1.14.11.44 GO:0005737 ... P83310 31209034
    198776 5bkc:B (1.8) BS01 MN 1.14.11.44 GO:0005737 ... P83310 31209034
    198777 5bkc:B (1.8) BS02 AKG 1.14.11.44 GO:0005737 ... P83310 31209034
    198778 5bkd:A (1.9) BS01 MN 1.14.11.44 GO:0005737 ... P83310 31209034
    198779 5bkd:A (1.9) BS02 AKG 1.14.11.44 GO:0005737 ... P83310 31209034
    198780 5bkd:A (1.9) BS03 RCF 1.14.11.44 GO:0005737 ... P83310 31209034
    198781 5bkd:B (1.9) BS01 MN 1.14.11.44 GO:0005737 ... P83310 31209034
    198782 5bkd:B (1.9) BS02 AKG 1.14.11.44 GO:0005737 ... P83310 31209034
    198783 5bkd:B (1.9) BS03 RCF 1.14.11.44 GO:0005737 ... P83310 31209034
    198784 5bkf:A (3.6) BS01 GLY ? GO:0004888 ... P23416 N/A
    198785 5bkf:A (3.6) BS02 GLY ? GO:0004888 ... P23416 N/A
    198786 5bkf:B (3.6) BS01 GLY ? GO:0004888 ... P23416 N/A
    198787 5bkf:B (3.6) BS02 GLY ? GO:0004888 ... P23416 N/A
    198788 5bkf:C (3.6) BS01 GLY ? GO:0004888 ... P23416 N/A
    198789 5bkf:C (3.6) BS02 GLY ? GO:0004888 ... P23416 N/A
    198790 5bkf:D (3.6) BS01 GLY ? GO:0004888 ... P23416 N/A
    198791 5bkf:D (3.6) BS02 GLY ? GO:0004888 ... P23416 N/A
    198792 5bkf:E (3.6) BS01 GLY ? GO:0003674 ... P42212
    P48167    		 N/A
    198793 5bkf:E (3.6) BS02 GLY ? GO:0003674 ... P42212
    P48167    		 N/A
    198794 5bkg:A (3.8) BS01 GLY ? GO:0004888 ... P23416 N/A
    198795 5bkg:A (3.8) BS02 GLY ? GO:0004888 ... P23416 N/A
    198796 5bkg:B (3.8) BS01 GLY ? GO:0004888 ... P23416 N/A
    198797 5bkg:B (3.8) BS02 GLY ? GO:0004888 ... P23416 N/A
    198798 5bkg:C (3.8) BS01 GLY ? GO:0004888 ... P23416 N/A
    198799 5bkg:E (3.8) BS01 GLY ? GO:0003674 ... P42212
    P48167    		 N/A
    198800 5bkj:A (3.5) BS01 PGW ? GO:0005886 ... O27564 37653172
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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