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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    84201 3g5s:A (1.05) BS01 FAD 2.1.1.74 GO:0002098 ... Q5SID2 19416846
    84202 3g5s:A (1.05) BS02 GSH 2.1.1.74 GO:0002098 ... Q5SID2 19416846
    84203 3g5t:A (1.119) BS01 SAH 2.1.1.145 GO:0005737 ... P32643 N/A
    84204 3g5t:A (1.119) BS02 T8N 2.1.1.145 GO:0005737 ... P32643 N/A
    84205 3g60:A (4.4) BS01 0JZ 7.6.2.1
    7.6.2.2    		 GO:0001666 ... P21447 19325113
    84206 3g60:B (4.4) BS01 0JZ 7.6.2.1
    7.6.2.2    		 GO:0001666 ... P21447 19325113
    84207 3g61:A (4.35) BS01 2J8 7.6.2.1
    7.6.2.2    		 GO:0001666 ... P21447 19325113
    84208 3g61:A (4.35) BS02 2J8 7.6.2.1
    7.6.2.2    		 GO:0001666 ... P21447 19325113
    84209 3g61:B (4.35) BS01 2J8 7.6.2.1
    7.6.2.2    		 GO:0001666 ... P21447 19325113
    84210 3g61:B (4.35) BS02 2J8 7.6.2.1
    7.6.2.2    		 GO:0001666 ... P21447 19325113
    84211 3g6e:1 (2.7) BS01 rna ? GO:0003723 ... P32410 19362093
    84212 3g6e:2 (2.7) BS01 rna ? GO:0003735 ... P22452 19362093
    84213 3g6e:3 (2.7) BS01 rna ? GO:0000049 ... P32411 19362093
    84214 3g6e:A (2.7) BS01 rna ? GO:0002181 ... P20276 19362093
    84215 3g6e:A (2.7) BS02 MG ? GO:0002181 ... P20276 19362093
    84216 3g6e:B (2.7) BS01 rna ? GO:0003723 ... P20279 19362093
    84217 3g6e:C (2.7) BS01 rna ? GO:0003723 ... P12735 19362093
    84218 3g6e:D (2.7) BS01 rna ? GO:0000049 ... P14124 19362093
    84219 3g6e:D (2.7) BS02 rna ? GO:0000049 ... P14124 19362093
    84220 3g6e:E (2.7) BS01 rna ? GO:0002181 ... P14135 19362093
    84221 3g6e:F (2.7) BS01 rna ? GO:0001682 ... P12743 19362093
    84222 3g6e:H (2.7) BS01 rna ? GO:0000027 ... P60617 19362093
    84223 3g6e:I (2.7) BS01 rna ? GO:0003735 ... P14122 19362093
    84224 3g6e:J (2.7) BS01 rna ? GO:0003729 ... P29198 19362093
    84225 3g6e:K (2.7) BS01 rna ? GO:0003735 ... P22450 19362093
    84226 3g6e:L (2.7) BS01 rna ? GO:0003735 ... P12737 19362093
    84227 3g6e:M (2.7) BS01 rna ? GO:0002181 ... P60618 19362093
    84228 3g6e:N (2.7) BS01 rna ? GO:0000027 ... P14123 19362093
    84229 3g6e:N (2.7) BS02 rna ? GO:0000027 ... P14123 19362093
    84230 3g6e:O (2.7) BS01 rna ? GO:0003723 ... P12733 19362093
    84231 3g6e:P (2.7) BS01 rna ? GO:0003723 ... P14119 19362093
    84232 3g6e:Q (2.7) BS01 rna ? GO:0003735 ... P12734 19362093
    84233 3g6e:Q (2.7) BS02 rna ? GO:0003735 ... P12734 19362093
    84234 3g6e:R (2.7) BS01 rna ? GO:0002181 ... P10970 19362093
    84235 3g6e:S (2.7) BS01 rna ? GO:0000027 ... P12732 19362093
    84236 3g6e:T (2.7) BS01 rna ? GO:0002181 ... P10972 19362093
    84237 3g6e:T (2.7) BS02 MG ? GO:0002181 ... P10972 19362093
    84238 3g6e:U (2.7) BS01 rna ? GO:0003735 ... P14116 19362093
    84239 3g6e:V (2.7) BS01 rna ? GO:0003735 ... P10971 19362093
    84240 3g6e:W (2.7) BS01 rna ? GO:0000463 ... P14121 19362093
    84241 3g6e:W (2.7) BS02 rna ? GO:0000463 ... P14121 19362093
    84242 3g6e:X (2.7) BS01 rna ? GO:0003735 ... P18138 19362093
    84243 3g6e:Y (2.7) BS01 rna ? GO:0003735 ... P12736 19362093
    84244 3g6e:Y (2.7) BS02 MG ? GO:0003735 ... P12736 19362093
    84245 3g6e:Z (2.7) BS01 rna ? GO:0003735 ... P60619 19362093
    84246 3g6k:A (1.35) BS01 POP 2.7.7.2 GO:0000287 ... Q6FNA9 19375431
    84247 3g6k:A (1.35) BS02 FAD 2.7.7.2 GO:0000287 ... Q6FNA9 19375431
    84248 3g6k:B (1.35) BS01 POP 2.7.7.2 GO:0000287 ... Q6FNA9 19375431
    84249 3g6k:B (1.35) BS02 FAD 2.7.7.2 GO:0000287 ... Q6FNA9 19375431
    84250 3g6k:B (1.35) BS03 BGC 2.7.7.2 GO:0000287 ... Q6FNA9 19375431
    84251 3g6k:C (1.35) BS01 POP 2.7.7.2 GO:0000287 ... Q6FNA9 19375431
    84252 3g6k:C (1.35) BS02 FAD 2.7.7.2 GO:0000287 ... Q6FNA9 19375431
    84253 3g6k:D (1.35) BS01 POP 2.7.7.2 GO:0000287 ... Q6FNA9 19375431
    84254 3g6k:D (1.35) BS02 FAD 2.7.7.2 GO:0000287 ... Q6FNA9 19375431
    84255 3g6k:E (1.35) BS01 POP 2.7.7.2 GO:0000287 ... Q6FNA9 19375431
    84256 3g6k:E (1.35) BS02 FAD 2.7.7.2 GO:0000287 ... Q6FNA9 19375431
    84257 3g6k:F (1.35) BS01 POP 2.7.7.2 GO:0000287 ... Q6FNA9 19375431
    84258 3g6k:F (1.35) BS02 FAD 2.7.7.2 GO:0000287 ... Q6FNA9 19375431
    84259 3g6m:A (1.65) BS01 CFF 3.2.1.14 GO:0000272 ... A9LI60 20829286 MOAD: Ki=19.7mM
    PDBbind: -logKd/Ki=1.71, Ki=19.7mM
    84260 3g6m:A (1.65) BS02 CFF 3.2.1.14 GO:0000272 ... A9LI60 20829286 MOAD: Ki=19.7mM
    PDBbind: -logKd/Ki=1.71, Ki=19.7mM
    84261 3g6w:A (2.9) BS01 GTP 2.4.2.9 GO:0000287 ... Q980Q4 19683539
    84262 3g6w:A (2.9) BS02 PRP 2.4.2.9 GO:0000287 ... Q980Q4 19683539
    84263 3g6w:A (2.9) BS03 GTP 2.4.2.9 GO:0000287 ... Q980Q4 19683539
    84264 3g6w:A (2.9) BS04 POP 2.4.2.9 GO:0000287 ... Q980Q4 19683539
    84265 3g6w:A (2.9) BS05 GTP 2.4.2.9 GO:0000287 ... Q980Q4 19683539
    84266 3g6w:B (2.9) BS01 GTP 2.4.2.9 GO:0000287 ... Q980Q4 19683539
    84267 3g6w:B (2.9) BS02 GTP 2.4.2.9 GO:0000287 ... Q980Q4 19683539
    84268 3g6w:B (2.9) BS03 HSX 2.4.2.9 GO:0000287 ... Q980Q4 19683539
    84269 3g6w:B (2.9) BS04 POP 2.4.2.9 GO:0000287 ... Q980Q4 19683539
    84270 3g6w:B (2.9) BS05 GTP 2.4.2.9 GO:0000287 ... Q980Q4 19683539
    84271 3g6w:C (2.9) BS01 GTP 2.4.2.9 GO:0000287 ... Q980Q4 19683539
    84272 3g6w:C (2.9) BS02 HSX 2.4.2.9 GO:0000287 ... Q980Q4 19683539
    84273 3g6w:C (2.9) BS03 POP 2.4.2.9 GO:0000287 ... Q980Q4 19683539
    84274 3g6w:C (2.9) BS04 GTP 2.4.2.9 GO:0000287 ... Q980Q4 19683539
    84275 3g6w:C (2.9) BS05 GTP 2.4.2.9 GO:0000287 ... Q980Q4 19683539
    84276 3g6w:D (2.9) BS01 GTP 2.4.2.9 GO:0000287 ... Q980Q4 19683539
    84277 3g6w:D (2.9) BS02 GTP 2.4.2.9 GO:0000287 ... Q980Q4 19683539
    84278 3g6w:D (2.9) BS03 GTP 2.4.2.9 GO:0000287 ... Q980Q4 19683539
    84279 3g6w:D (2.9) BS04 PRP 2.4.2.9 GO:0000287 ... Q980Q4 19683539
    84280 3g6w:D (2.9) BS05 HSX 2.4.2.9 GO:0000287 ... Q980Q4 19683539
    84281 3g71:1 (2.85) BS01 rna ? GO:0003723 ... P32410 19362093
    84282 3g71:2 (2.85) BS01 rna ? GO:0003735 ... P22452 19362093
    84283 3g71:3 (2.85) BS01 rna ? GO:0000049 ... P32411 19362093
    84284 3g71:A (2.85) BS01 rna ? GO:0002181 ... P20276 19362093
    84285 3g71:A (2.85) BS02 MG ? GO:0002181 ... P20276 19362093
    84286 3g71:B (2.85) BS01 rna ? GO:0003723 ... P20279 19362093
    84287 3g71:C (2.85) BS01 rna ? GO:0003723 ... P12735 19362093
    84288 3g71:D (2.85) BS01 rna ? GO:0000049 ... P14124 19362093
    84289 3g71:D (2.85) BS02 rna ? GO:0000049 ... P14124 19362093
    84290 3g71:E (2.85) BS01 rna ? GO:0002181 ... P14135 19362093
    84291 3g71:F (2.85) BS01 rna ? GO:0001682 ... P12743 19362093
    84292 3g71:H (2.85) BS01 rna ? GO:0000027 ... P60617 19362093
    84293 3g71:H (2.85) BS02 rna ? GO:0000027 ... P60617 19362093
    84294 3g71:I (2.85) BS01 rna ? GO:0003735 ... P14122 19362093
    84295 3g71:J (2.85) BS01 rna ? GO:0003729 ... P29198 19362093
    84296 3g71:K (2.85) BS01 rna ? GO:0003735 ... P22450 19362093
    84297 3g71:L (2.85) BS01 rna ? GO:0003735 ... P12737 19362093
    84298 3g71:M (2.85) BS01 rna ? GO:0002181 ... P60618 19362093
    84299 3g71:N (2.85) BS01 rna ? GO:0000027 ... P14123 19362093
    84300 3g71:N (2.85) BS02 rna ? GO:0000027 ... P14123 19362093
    84301 3g71:O (2.85) BS01 rna ? GO:0003723 ... P12733 19362093
    84302 3g71:P (2.85) BS01 rna ? GO:0003723 ... P14119 19362093
    84303 3g71:Q (2.85) BS01 rna ? GO:0003735 ... P12734 19362093
    84304 3g71:Q (2.85) BS02 rna ? GO:0003735 ... P12734 19362093
    84305 3g71:R (2.85) BS01 rna ? GO:0002181 ... P10970 19362093
    84306 3g71:S (2.85) BS01 rna ? GO:0000027 ... P12732 19362093
    84307 3g71:T (2.85) BS01 rna ? GO:0002181 ... P10972 19362093
    84308 3g71:T (2.85) BS02 MG ? GO:0002181 ... P10972 19362093
    84309 3g71:U (2.85) BS01 rna ? GO:0003735 ... P14116 19362093
    84310 3g71:V (2.85) BS01 rna ? GO:0003735 ... P10971 19362093
    84311 3g71:W (2.85) BS01 rna ? GO:0000463 ... P14121 19362093
    84312 3g71:W (2.85) BS02 rna ? GO:0000463 ... P14121 19362093
    84313 3g71:X (2.85) BS01 rna ? GO:0003735 ... P18138 19362093
    84314 3g71:Y (2.85) BS01 rna ? GO:0003735 ... P12736 19362093
    84315 3g71:Y (2.85) BS02 MG ? GO:0003735 ... P12736 19362093
    84316 3g71:Z (2.85) BS01 rna ? GO:0003735 ... P60619 19362093
    84317 3g77:A (1.8) BS01 FE 3.5.4.-
    3.5.4.1    		 GO:0004131 ... P25524 19487291
    84318 3g7f:C (2.5) BS01 HEC ? GO:0005506 ... P07173 19539602
    84319 3g7f:C (2.5) BS02 HEC ? GO:0005506 ... P07173 19539602
    84320 3g7f:C (2.5) BS03 HEC ? GO:0005506 ... P07173 19539602
    84321 3g7f:C (2.5) BS04 HEC ? GO:0005506 ... P07173 19539602
    84322 3g7f:L (2.5) BS01 BCB ? GO:0009772 ... P06009 19539602
    84323 3g7f:L (2.5) BS02 BCB ? GO:0009772 ... P06009 19539602
    84324 3g7f:L (2.5) BS03 BPB ? GO:0009772 ... P06009 19539602
    84325 3g7f:L (2.5) BS04 UQ1 ? GO:0009772 ... P06009 19539602
    84326 3g7f:L (2.5) BS05 FE2 ? GO:0009772 ... P06009 19539602
    84327 3g7f:L (2.5) BS06 MQ9 ? GO:0009772 ... P06009 19539602
    84328 3g7f:L (2.5) BS07 BCB ? GO:0009772 ... P06009 19539602
    84329 3g7f:L (2.5) BS08 BPB ? GO:0009772 ... P06009 19539602
    84330 3g7f:M (2.5) BS01 BCB ? GO:0009772 ... P06010 19539602
    84331 3g7f:M (2.5) BS02 BPB ? GO:0009772 ... P06010 19539602
    84332 3g7f:M (2.5) BS03 FE2 ? GO:0009772 ... P06010 19539602
    84333 3g7f:M (2.5) BS04 MQ9 ? GO:0009772 ... P06010 19539602
    84334 3g7f:M (2.5) BS05 UQ1 ? GO:0009772 ... P06010 19539602
    84335 3g7f:M (2.5) BS06 BCB ? GO:0009772 ... P06010 19539602
    84336 3g7f:M (2.5) BS07 BPB ? GO:0009772 ... P06010 19539602
    84337 3g7f:M (2.5) BS08 BPB ? GO:0009772 ... P06010 19539602
    84338 3g7f:M (2.5) BS09 NS5 ? GO:0009772 ... P06010 19539602
    84339 3g7v:A (1.86) BS01 GLC ? GO:0005179 ... P0AEX9
    P10997    		 19475663
    84340 3g7v:A (1.86) BS02 GLC ? GO:0005179 ... P0AEX9
    P10997    		 19475663
    84341 3g7v:B (1.86) BS01 GLC ? GO:0005179 ... P0AEX9
    P10997    		 19475663
    84342 3g7v:B (1.86) BS02 GLC ? GO:0005179 ... P0AEX9
    P10997    		 19475663
    84343 3g7v:C (1.86) BS01 GLC ? GO:0005179 ... P0AEX9
    P10997    		 19475663
    84344 3g7v:C (1.86) BS02 GLC ? GO:0005179 ... P0AEX9
    P10997    		 19475663
    84345 3g7v:D (1.86) BS01 GLC ? GO:0005179 ... P0AEX9
    P10997    		 19475663
    84346 3g7v:D (1.86) BS02 GLC ? GO:0005179 ... P0AEX9
    P10997    		 19475663
    84347 3g7w:A (1.75) BS01 GLC ? GO:0005179 ... P0AEX9
    P10997    		 19475663
    84348 3g7w:A (1.75) BS02 GLC ? GO:0005179 ... P0AEX9
    P10997    		 19475663
    84349 3g7w:A (1.75) BS03 GLC ? GO:0005179 ... P0AEX9
    P10997    		 19475663
    84350 3g7x:A (1.55) BS01 HSM ? GO:0005576 ... O77421 N/A
    84351 3g7x:B (1.55) BS01 HSM ? GO:0005576 ... O77421 N/A
    84352 3g82:C (3.11) BS01 MG ? GO:0003924 ... P04896 N/A
    84353 3g82:C (3.11) BS02 GSP ? GO:0003924 ... P04896 N/A
    84354 3g88:A (1.87) BS01 SAM 2.1.1.170 GO:0005737 ... Q9LCY2 19622680
    84355 3g88:B (1.87) BS01 SAM 2.1.1.170 GO:0005737 ... Q9LCY2 19622680
    84356 3g89:A (1.5) BS01 SAM 2.1.1.170 GO:0005737 ... Q9LCY2 19622680
    84357 3g89:A (1.5) BS02 AMP 2.1.1.170 GO:0005737 ... Q9LCY2 19622680
    84358 3g89:B (1.5) BS01 SAM 2.1.1.170 GO:0005737 ... Q9LCY2 19622680
    84359 3g89:B (1.5) BS02 AMP 2.1.1.170 GO:0005737 ... Q9LCY2 19622680
    84360 3g8a:A (2.1) BS01 SAH 2.1.1.170 GO:0005737 ... Q9LCY2 19622680
    84361 3g8a:B (2.1) BS01 SAH 2.1.1.170 GO:0005737 ... Q9LCY2 19622680
    84362 3g8a:C (2.1) BS01 SAH 2.1.1.170 GO:0005737 ... Q9LCY2 19622680
    84363 3g8a:D (2.1) BS01 SAH 2.1.1.170 GO:0005737 ... Q9LCY2 19622680
    84364 3g8a:E (2.1) BS01 SAH 2.1.1.170 GO:0005737 ... Q9LCY2 19622680
    84365 3g8a:F (2.1) BS01 SAH 2.1.1.170 GO:0005737 ... Q9LCY2 19622680
    84366 3g8b:A (2.1) BS01 SAM 2.1.1.170 GO:0005737 ... Q9LCY2 19622680
    84367 3g8b:B (2.1) BS01 SAM 2.1.1.170 GO:0005737 ... Q9LCY2 19622680
    84368 3g8c:A (2.0) BS01 ADP 6.3.4.14 GO:0003824 ... P24182 19213731
    84369 3g8c:A (2.0) BS02 MG 6.3.4.14 GO:0003824 ... P24182 19213731
    84370 3g8c:A (2.0) BS03 BTN 6.3.4.14 GO:0003824 ... P24182 19213731
    84371 3g8c:A (2.0) BS04 BCT 6.3.4.14 GO:0003824 ... P24182 19213731
    84372 3g8c:B (2.0) BS01 ADP 6.3.4.14 GO:0003824 ... P24182 19213731
    84373 3g8c:B (2.0) BS02 MG 6.3.4.14 GO:0003824 ... P24182 19213731
    84374 3g8c:B (2.0) BS03 BTN 6.3.4.14 GO:0003824 ... P24182 19213731
    84375 3g8c:B (2.0) BS04 BCT 6.3.4.14 GO:0003824 ... P24182 19213731
    84376 3g8d:B (1.9) BS01 ADP 6.3.4.14 GO:0003824 ... P24182 19213731
    84377 3g8e:A (3.0) BS01 IS1 2.4.2.12 GO:0000166 ... Q80Z29 19533035 PDBbind: -logKd/Ki=5.35, Kd=4.5uM
    84378 3g8e:B (3.0) BS01 IS1 2.4.2.12 GO:0000166 ... Q80Z29 19533035 PDBbind: -logKd/Ki=5.35, Kd=4.5uM
    84379 3g8e:B (3.0) BS02 IS1 2.4.2.12 GO:0000166 ... Q80Z29 19533035 PDBbind: -logKd/Ki=5.35, Kd=4.5uM
    84380 3g8f:A (1.25) BS01 peptide 3.1.1.4 GO:0004623 ... P59071 N/A
    84381 3g8i:A (2.2) BS01 peptide ? GO:0003677 ... Q07869 19349176
    84382 3g8i:A (2.2) BS02 RO7 ? GO:0003677 ... Q07869 19349176 MOAD: ic50=0.038uM
    PDBbind: -logKd/Ki=7.42, IC50=0.038uM
    BindingDB: IC50=38nM, EC50=103nM
    84383 3g8m:A (3.3) BS01 PLP 2.1.2.1 GO:0003824 ... P0A825 19883126
    84384 3g93:A (3.2) BS01 HEM 1.14.14.1 GO:0004497 ... P00178 19397311
    84385 3g93:A (3.2) BS02 PB2 1.14.14.1 GO:0004497 ... P00178 19397311
    84386 3g93:B (3.2) BS01 HEM 1.14.14.1 GO:0004497 ... P00178 19397311
    84387 3g93:B (3.2) BS02 PB2 1.14.14.1 GO:0004497 ... P00178 19397311
    84388 3g93:B (3.2) BS03 HEM 1.14.14.1 GO:0004497 ... P00178 19397311
    84389 3g93:C (3.2) BS01 HEM 1.14.14.1 GO:0004497 ... P00178 19397311
    84390 3g93:C (3.2) BS02 PB2 1.14.14.1 GO:0004497 ... P00178 19397311
    84391 3g93:D (3.2) BS01 HEM 1.14.14.1 GO:0004497 ... P00178 19397311
    84392 3g93:D (3.2) BS02 PB2 1.14.14.1 GO:0004497 ... P00178 19397311
    84393 3g9e:A (2.3) BS01 peptide ? GO:0003677 ... P37231 19349176
    84394 3g9e:A (2.3) BS02 RO7 ? GO:0003677 ... P37231 19349176 MOAD: ic50=0.019uM
    PDBbind: -logKd/Ki=7.72, IC50=0.019uM
    BindingDB: IC50=19nM, EC50=21nM
    84395 3ga5:A (1.87) BS01 RGG ? GO:0006935 ... P23905 19292879 MOAD: Kd=3.2uM
    PDBbind: -logKd/Ki=5.49, Kd=3.2uM
    84396 3ga5:A (1.87) BS02 CA ? GO:0006935 ... P23905 19292879
    84397 3ga5:B (1.87) BS01 RGG ? GO:0006935 ... P23905 19292879 MOAD: Kd=3.2uM
    84398 3ga5:B (1.87) BS02 CA ? GO:0006935 ... P23905 19292879
    84399 3gac:E (2.1) BS01 ENO 5.3.2.1
    5.3.3.12    		 GO:0005125 ... Q1HEA2 20004020
    84400 3gal:A (1.9) BS01 1GN ? GO:0005515 ... P47929 9760227
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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