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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    801 1abb:D (2.8) BS03 PDP 2.4.1.1 GO:0000166 ... P00489 1304390
    802 1abb:D (2.8) BS04 IMP 2.4.1.1 GO:0000166 ... P00489 1304390
    803 1abe:A (1.7) BS01 ARA ? GO:0015407 ... P02924 6379466
    804 1abe:A (1.7) BS02 ARB ? GO:0015407 ... P02924 6379466
    805 1abf:A (1.9) BS01 FCA ? GO:0015407 ... P02924 2818726 MOAD: Kd=3.8uM
    PDBbind: -logKd/Ki=5.42, Kd=3.8uM
    806 1abf:A (1.9) BS02 FCB ? GO:0015407 ... P02924 2818726 MOAD: Kd=3.8uM
    807 1abi:H (2.3) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 1445905
    808 1abj:H (2.4) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 1445905
    809 1abj:H (2.4) BS02 0G6 3.4.21.5 GO:0004252 ... P00734 1445905
    810 1abn:A (2.4) BS01 NDP 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 1447221
    811 1abs:A (1.5) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 7935843
    812 1abt:A (-1.00) BS01 peptide ? GO:0005515 ... P60615 8241115
    813 1abw:A (2.0) BS01 MET ? GO:0004601 ... P69905 9032082
    814 1abw:A (2.0) BS02 LEU ? GO:0004601 ... P69905 9032082
    815 1abw:A (2.0) BS03 MET ? GO:0004601 ... P69905 9032082
    816 1abw:A (2.0) BS04 LEU ? GO:0004601 ... P69905 9032082
    817 1abw:A (2.0) BS05 HEM ? GO:0004601 ... P69905 9032082
    818 1abw:A (2.0) BS06 HEM ? GO:0004601 ... P69905 9032082
    819 1abw:B (2.0) BS01 HEM ? GO:0004601 ... P68871 9032082
    820 1abw:D (2.0) BS01 HEM ? GO:0004601 ... P68871 9032082
    821 1aby:A (2.6) BS01 HEM ? GO:0004601 ... P69905 9032082
    822 1aby:A (2.6) BS02 HEM ? GO:0004601 ... P69905 9032082
    823 1aby:B (2.6) BS01 HEM ? GO:0004601 ... P68871 9032082
    824 1aby:D (2.6) BS01 HEM ? GO:0004601 ... P68871 9032082
    825 1ac0:A (-1.00) BS01 GLC 3.2.1.3 GO:0030246 ... P69328 9195884
    826 1ac0:A (-1.00) BS02 GLC 3.2.1.3 GO:0030246 ... P69328 9195884
    827 1ac0:A (-1.00) BS03 GLC 3.2.1.3 GO:0030246 ... P69328 9195884
    828 1ac0:A (-1.00) BS04 GLC 3.2.1.3 GO:0030246 ... P69328 9195884
    829 1ac4:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 N/A
    830 1ac4:A (2.1) BS02 TMT 1.11.1.5 GO:0004601 ... P00431 N/A
    831 1ac8:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 N/A
    832 1ac8:A (2.1) BS02 TMZ 1.11.1.5 GO:0004601 ... P00431 N/A
    833 1aca:A (-1.00) BS01 COA ? GO:0000062 ... P07107 8503960
    834 1acc:A (2.1) BS01 CA ? GO:0005515 ... P13423 9039918
    835 1acc:A (2.1) BS02 CA ? GO:0005515 ... P13423 9039918
    836 1acj:A (2.8) BS01 THA 3.1.1.7 GO:0001507 ... P04058 8415649 PDBbind: -logKd/Ki=8.09, IC50=8.2nM
    BindingDB: IC50=29nM, Ki=40nM
    837 1acl:A (2.8) BS01 DME 3.1.1.7 GO:0001507 ... P04058 8415649
    838 1acm:A (2.8) BS01 PAL 2.1.3.2 GO:0004070 ... P0A786 1303763
    839 1acm:B (2.8) BS01 ZN ? GO:0005515 ... P0A7F3 1303763
    840 1acm:C (2.8) BS01 PAL 2.1.3.2 GO:0004070 ... P0A786 1303763
    841 1acm:D (2.8) BS01 ZN ? GO:0005515 ... P0A7F3 1303763
    842 1aco:A (2.05) BS01 TRA 4.2.1.3 GO:0003994 ... P20004 8151704
    843 1aco:A (2.05) BS02 SF4 4.2.1.3 GO:0003994 ... P20004 8151704
    844 1acz:A (-1.00) BS01 GLC 3.2.1.3 GO:0030246 ... P69328 9195884
    845 1acz:A (-1.00) BS02 GLC 3.2.1.3 GO:0030246 ... P69328 9195884
    846 1acz:A (-1.00) BS03 GLC 3.2.1.3 GO:0030246 ... P69328 9195884
    847 1acz:A (-1.00) BS04 GLC 3.2.1.3 GO:0030246 ... P69328 9195884
    848 1ad3:A (2.6) BS01 NAD 1.2.1.5 GO:0001666 ... P11883 9095201
    849 1ad3:B (2.6) BS01 NAD 1.2.1.5 GO:0001666 ... P11883 9095201
    850 1ad4:A (2.4) BS01 HH2 2.5.1.15 GO:0004156 ... O05701 9149138
    851 1ad5:A (2.6) BS01 CA 2.7.10.2 GO:0004672 ... P08631 9024658
    852 1ad5:A (2.6) BS02 ANP 2.7.10.2 GO:0004672 ... P08631 9024658
    853 1ad5:A (2.6) BS03 CA 2.7.10.2 GO:0004672 ... P08631 9024658
    854 1ad5:B (2.6) BS01 CA 2.7.10.2 GO:0004672 ... P08631 9024658
    855 1ad5:B (2.6) BS02 CA 2.7.10.2 GO:0004672 ... P08631 9024658
    856 1ad5:B (2.6) BS03 ANP 2.7.10.2 GO:0004672 ... P08631 9024658
    857 1ad8:H (2.0) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 9033393
    858 1ad8:H (2.0) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 9033393
    859 1ad8:H (2.0) BS03 MDL 3.4.21.5 GO:0004252 ... P00734 9033393 PDBbind: -logKd/Ki=6.60, Ki=0.25uM
    860 1adb:A (2.4) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 7918390
    861 1adb:A (2.4) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 7918390
    862 1adb:A (2.4) BS03 CND 1.1.1.1 GO:0004022 ... P00327 7918390
    863 1adb:B (2.4) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 7918390
    864 1adb:B (2.4) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 7918390
    865 1adb:B (2.4) BS03 CND 1.1.1.1 GO:0004022 ... P00327 7918390
    866 1adc:A (2.7) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 7918390
    867 1adc:A (2.7) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 7918390
    868 1adc:A (2.7) BS03 PAD 1.1.1.1 GO:0004022 ... P00327 7918390
    869 1adc:B (2.7) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 7918390
    870 1adc:B (2.7) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 7918390
    871 1adc:B (2.7) BS03 PAD 1.1.1.1 GO:0004022 ... P00327 7918390
    872 1add:A (2.4) BS01 ZN 3.5.4.4 GO:0000255 ... P03958 8439534
    873 1add:A (2.4) BS02 1DA 3.5.4.4 GO:0000255 ... P03958 8439534 MOAD: Ki=0.18uM
    PDBbind: -logKd/Ki=6.74, Ki=0.18uM
    874 1adf:A (2.9) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 8286346
    875 1adf:A (2.9) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 8286346
    876 1adf:A (2.9) BS03 TAD 1.1.1.1 GO:0004022 ... P00327 8286346
    877 1adg:A (2.7) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 8286346
    878 1adg:A (2.7) BS02 SAD 1.1.1.1 GO:0004022 ... P00327 8286346
    879 1adj:A (2.7) BS01 HIS 6.1.1.21 GO:0004812 ... P56194 9115984
    880 1adj:B (2.7) BS01 HIS 6.1.1.21 GO:0004812 ... P56194 9115984
    881 1adj:C (2.7) BS01 HIS 6.1.1.21 GO:0004812 ... P56194 9115984
    882 1adj:D (2.7) BS01 HIS 6.1.1.21 GO:0004812 ... P56194 9115984
    883 1adl:A (1.6) BS01 ACD ? GO:0005324 ... P04117 7929228 MOAD: Kd=4.4uM
    PDBbind: -logKd/Ki=5.36, Kd=4.4uM
    884 1adn:A (-1.00) BS01 ZN 2.1.1.63
    2.1.1.n11    		 GO:0003677 ... P06134 8260490
    885 1ads:A (1.65) BS01 NAP 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 1621098
    886 1adu:A (3.0) BS01 ZN ? GO:0003677 ... P03265 8632448
    887 1adu:A (3.0) BS02 ZN ? GO:0003677 ... P03265 8632448
    888 1adu:B (3.0) BS01 ZN ? GO:0003677 ... P03265 8632448
    889 1adu:B (3.0) BS02 ZN ? GO:0003677 ... P03265 8632448
    890 1adv:A (3.2) BS01 ZN ? GO:0003677 ... P03265 8632448
    891 1adv:A (3.2) BS02 ZN ? GO:0003677 ... P03265 8632448
    892 1adv:B (3.2) BS01 ZN ? GO:0003677 ... P03265 8632448
    893 1adv:B (3.2) BS02 ZN ? GO:0003677 ... P03265 8632448
    894 1adw:A (2.5) BS01 CU ? GO:0005507 ... P80401 7583671
    895 1adw:B (2.5) BS01 CU ? GO:0005507 ... P80401 7583671
    896 1ady:A (2.8) BS01 HAM 6.1.1.21 GO:0004812 ... P56194 9115984
    897 1ady:B (2.8) BS01 HAM 6.1.1.21 GO:0004812 ... P56194 9115984
    898 1ady:C (2.8) BS01 HAM 6.1.1.21 GO:0004812 ... P56194 9115984
    899 1ady:D (2.8) BS01 HAM 6.1.1.21 GO:0004812 ... P56194 9115984
    900 1ae1:A (2.4) BS01 NAP 1.1.1.206 GO:0009710 ... P50162 9560196
    901 1ae1:B (2.4) BS01 NAP 1.1.1.206 GO:0009710 ... P50162 9560196
    902 1ae4:A (2.4) BS01 NAP 1.1.1.19
    1.1.1.2
    1.1.1.20
    1.1.1.372
    1.1.1.54
    1.6.-.-    		 GO:0004032 ... P50578 9329083
    903 1ae8:H (2.0) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 9217260
    904 1ae8:H (2.0) BS02 AZL 3.4.21.5 GO:0004252 ... P00734 9217260
    905 1aeb:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 11812152
    906 1aeb:A (2.1) BS02 3MT 1.11.1.5 GO:0004601 ... P00431 11812152
    907 1aec:A (1.86) BS01 E64 3.4.22.14 GO:0006508 ... P00785 1606141
    908 1aed:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 11812152
    909 1aed:A (2.1) BS02 DTI 1.11.1.5 GO:0004601 ... P00431 11812152
    910 1aee:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 11812152
    911 1aee:A (2.1) BS02 ANL 1.11.1.5 GO:0004601 ... P00431 11812152
    912 1aef:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 11812152
    913 1aef:A (2.1) BS02 3AP 1.11.1.5 GO:0004601 ... P00431 11812152
    914 1aeg:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 11812152
    915 1aeg:A (2.1) BS02 4AP 1.11.1.5 GO:0004601 ... P00431 11812152
    916 1aeh:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 11812152
    917 1aeh:A (2.1) BS02 24T 1.11.1.5 GO:0004601 ... P00431 11812152
    918 1aei:A (2.8) BS01 CA ? GO:0005509 ... P26256 7477411
    919 1aei:A (2.8) BS02 CA ? GO:0005509 ... P26256 7477411
    920 1aei:A (2.8) BS03 CA ? GO:0005509 ... P26256 7477411
    921 1aei:A (2.8) BS04 CA ? GO:0005509 ... P26256 7477411
    922 1aei:B (2.8) BS01 CA ? GO:0005509 ... P26256 7477411
    923 1aei:B (2.8) BS02 CA ? GO:0005509 ... P26256 7477411
    924 1aei:B (2.8) BS03 CA ? GO:0005509 ... P26256 7477411
    925 1aei:B (2.8) BS04 CA ? GO:0005509 ... P26256 7477411
    926 1aei:C (2.8) BS01 CA ? GO:0005509 ... P26256 7477411
    927 1aei:C (2.8) BS02 CA ? GO:0005509 ... P26256 7477411
    928 1aei:C (2.8) BS03 CA ? GO:0005509 ... P26256 7477411
    929 1aei:C (2.8) BS04 CA ? GO:0005509 ... P26256 7477411
    930 1aei:D (2.8) BS01 CA ? GO:0005509 ... P26256 7477411
    931 1aei:D (2.8) BS02 CA ? GO:0005509 ... P26256 7477411
    932 1aei:D (2.8) BS03 CA ? GO:0005509 ... P26256 7477411
    933 1aei:D (2.8) BS04 CA ? GO:0005509 ... P26256 7477411
    934 1aei:E (2.8) BS01 CA ? GO:0005509 ... P26256 7477411
    935 1aei:E (2.8) BS02 CA ? GO:0005509 ... P26256 7477411
    936 1aei:E (2.8) BS03 CA ? GO:0005509 ... P26256 7477411
    937 1aei:E (2.8) BS04 CA ? GO:0005509 ... P26256 7477411
    938 1aei:F (2.8) BS01 CA ? GO:0005509 ... P26256 7477411
    939 1aei:F (2.8) BS02 CA ? GO:0005509 ... P26256 7477411
    940 1aei:F (2.8) BS03 CA ? GO:0005509 ... P26256 7477411
    941 1aei:F (2.8) BS04 CA ? GO:0005509 ... P26256 7477411
    942 1aej:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 11812152
    943 1aej:A (2.1) BS02 NVI 1.11.1.5 GO:0004601 ... P00431 11812152
    944 1aek:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 11812152
    945 1aek:A (2.1) BS02 IDM 1.11.1.5 GO:0004601 ... P00431 11812152
    946 1aem:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 11812152
    947 1aem:A (2.1) BS02 MPI 1.11.1.5 GO:0004601 ... P00431 11812152
    948 1aen:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 11812152
    949 1aen:A (2.1) BS02 25T 1.11.1.5 GO:0004601 ... P00431 11812152
    950 1aeo:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 11812152
    951 1aeo:A (2.1) BS02 2AP 1.11.1.5 GO:0004601 ... P00431 11812152
    952 1aeq:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 11812152
    953 1aeq:A (2.1) BS02 2EZ 1.11.1.5 GO:0004601 ... P00431 11812152
    954 1aer:A (2.3) BS01 TAD 2.4.2.36 GO:0047286 ... P11439 8692916
    955 1aer:B (2.3) BS01 TIA 2.4.2.36 GO:0047286 ... P11439 8692916
    956 1aer:B (2.3) BS02 AMP 2.4.2.36 GO:0047286 ... P11439 8692916
    957 1aes:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 8673607
    958 1aes:A (2.1) BS02 IMD 1.11.1.5 GO:0004601 ... P00431 8673607
    959 1aet:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 8673607
    960 1aet:A (2.1) BS02 1MZ 1.11.1.5 GO:0004601 ... P00431 8673607
    961 1aeu:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 8673607
    962 1aeu:A (2.1) BS02 2MZ 1.11.1.5 GO:0004601 ... P00431 8673607
    963 1aev:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 9305956
    964 1aev:A (2.1) BS02 AMT 1.11.1.5 GO:0004601 ... P00431 9305956
    965 1aex:A (2.1) BS01 CA 3.1.31.1 GO:0003676 ... P00644 8762134
    966 1aex:A (2.1) BS02 THP 3.1.31.1 GO:0003676 ... P00644 8762134
    967 1af0:A (1.8) BS01 ZN 3.4.24.40 GO:0001907 ... P23694 N/A
    968 1af0:A (1.8) BS02 CA 3.4.24.40 GO:0001907 ... P23694 N/A
    969 1af0:A (1.8) BS03 CA 3.4.24.40 GO:0001907 ... P23694 N/A
    970 1af0:A (1.8) BS04 CA 3.4.24.40 GO:0001907 ... P23694 N/A
    971 1af0:A (1.8) BS05 CA 3.4.24.40 GO:0001907 ... P23694 N/A
    972 1af0:A (1.8) BS06 CA 3.4.24.40 GO:0001907 ... P23694 N/A
    973 1af0:A (1.8) BS07 CA 3.4.24.40 GO:0001907 ... P23694 N/A
    974 1af0:A (1.8) BS08 CA 3.4.24.40 GO:0001907 ... P23694 N/A
    975 1af0:A (1.8) BS09 0Z9 3.4.24.40 GO:0001907 ... P23694 N/A
    976 1af2:A (2.3) BS01 ZN 3.5.4.5 GO:0001884 ... P0ABF6 9125497
    977 1af2:A (2.3) BS02 U 3.5.4.5 GO:0001884 ... P0ABF6 9125497 PDBbind: -logKd/Ki=3.10, Ki=0.8mM
    978 1af4:A (2.6) BS01 CA 3.4.21.62 GO:0004252 ... P00780 9113975
    979 1af6:A (2.4) BS01 GLC ? GO:0001618 ... P02943 9299337 PDBbind: -logKd/Ki=1.82, Kd=15mM
    980 1af6:A (2.4) BS02 FRU ? GO:0001618 ... P02943 9299337
    981 1af6:B (2.4) BS01 GLC ? GO:0001618 ... P02943 9299337 PDBbind: -logKd/Ki=1.82, Kd=15mM
    982 1af6:B (2.4) BS02 FRU ? GO:0001618 ... P02943 9299337
    983 1af6:C (2.4) BS01 GLC ? GO:0001618 ... P02943 9299337
    984 1af6:C (2.4) BS02 FRU ? GO:0001618 ... P02943 9299337
    985 1af7:A (2.0) BS01 SAH 2.1.1.80 GO:0006935 ... P07801 9115443
    986 1afc:A (2.7) BS01 GU4 ? GO:0001525 ... P03968 7520817
    987 1afc:A (2.7) BS02 YYJ ? GO:0001525 ... P03968 7520817
    988 1afc:B (2.7) BS01 GU4 ? GO:0001525 ... P03968 7520817
    989 1afc:B (2.7) BS02 YYJ ? GO:0001525 ... P03968 7520817
    990 1afc:C (2.7) BS01 GU4 ? GO:0001525 ... P03968 7520817
    991 1afc:C (2.7) BS02 YYJ ? GO:0001525 ... P03968 7520817
    992 1afc:D (2.7) BS01 GU4 ? GO:0001525 ... P03968 7520817
    993 1afc:D (2.7) BS02 YYJ ? GO:0001525 ... P03968 7520817
    994 1afc:E (2.7) BS01 GU4 ? GO:0001525 ... P03968 7520817
    995 1afc:E (2.7) BS02 YYJ ? GO:0001525 ... P03968 7520817
    996 1afc:F (2.7) BS01 GU4 ? GO:0001525 ... P03968 7520817
    997 1afc:F (2.7) BS02 YYJ ? GO:0001525 ... P03968 7520817
    998 1afc:G (2.7) BS01 GU4 ? GO:0001525 ... P03968 7520817
    999 1afc:G (2.7) BS02 YYJ ? GO:0001525 ... P03968 7520817
    1000 1afc:H (2.7) BS01 GU4 ? GO:0001525 ... P03968 7520817
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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