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BioLiP Library
>rna
acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuucaacauuuuuuggcaccgcgacccucgcac
uuguggagucg

The query sequence (length=91) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5wsg:L 91 91 1.0000 1.0000 1.0000 2.58e-43 5ylz:F
2 5y88:F 82 91 0.9011 1.0000 0.9011 1.58e-25
3 6j6q:L 210 52 0.5714 0.2476 1.0000 1.23e-21
4 6j6h:L 209 52 0.5714 0.2488 1.0000 1.23e-21
5 6j6g:L 208 52 0.5714 0.2500 1.0000 1.23e-21
6 5gm6:L 66 52 0.5714 0.7879 1.0000 1.23e-21
7 7dco:H 169 52 0.5714 0.3077 1.0000 1.23e-21
8 5lqw:2 81 50 0.5495 0.6173 1.0000 1.60e-20
9 5mq0:2 155 49 0.5385 0.3161 1.0000 5.74e-20
10 5mps:2 49 49 0.5385 1.0000 1.0000 5.74e-20
11 5gmk:L 127 49 0.5385 0.3858 1.0000 5.74e-20
12 5gmk:L 127 39 0.4286 0.3071 1.0000 2.08e-14
13 6exn:2 136 54 0.5714 0.3824 0.9630 2.06e-19
14 5lj3:Z 171 53 0.5604 0.2982 0.9623 2.67e-18 5lj5:Z
15 6j6n:L 205 46 0.5055 0.2244 1.0000 2.67e-18
16 6bk8:2 135 45 0.4945 0.3333 1.0000 9.60e-18
17 7b9v:2 196 52 0.5495 0.2551 0.9615 9.60e-18
18 3jb9:P 111 44 0.4725 0.3874 0.9773 5.78e-15

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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