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BioLiP
>protein
VPNDILEEQLYNSIVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVEFRLI
FAENAIKLMYKRDGLALTLSNDVHGNDGRLAFGDGKDKTSPKVSWKFIALWENNKVYFKILNTERNQYLVLGVGTNPNGD
HMAFGVNSVDSFRAQWYLQPAKYDKDNLFYIYNREYSKALTLSRTLETSGNRMAWGYNGRVIGSPEHYAWGVKAF

The query sequence (length=235) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4efp:A 235 235 1.0000 1.0000 1.0000 2.11e-178 4efp:B, 4efq:A, 4efq:B
2 4nbm:C 369 57 0.0723 0.0461 0.2982 3.0 4nbm:D, 4nc4:A, 4nc4:C
3 6xwk:AAA 162 43 0.0553 0.0802 0.3023 3.9
4 3v71:A 364 39 0.0468 0.0302 0.2821 4.2
5 7ncz:A 227 103 0.0979 0.1013 0.2233 7.2 7nm6:A, 7npp:A, 7ny3:A, 7o6h:A, 7oof:A, 7ory:A, 7p25:A, 7p90:A, 7pbf:A
6 6aem:A 84 43 0.0596 0.1667 0.3256 8.0 6aem:B
7 5ntg:A 512 66 0.1021 0.0469 0.3636 8.1 5ntg:B
8 1f99:A 162 42 0.0596 0.0864 0.3333 8.5 1f99:K, 1f99:M
9 1i7y:A 162 43 0.0511 0.0741 0.2791 9.3 1ktp:A, 6ypq:A, 6yyj:A, 6yyj:E, 6yyj:C
10 5gll:A 331 65 0.0809 0.0574 0.2923 9.4 5glk:B, 5glm:A, 5glm:B, 5gln:A, 5gln:B, 5glo:A, 5glo:B, 5glp:A, 5glp:B, 5glq:A, 5glq:B, 5glr:A, 5glr:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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