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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SMTVCQLYAKQIRHRGNVKHNTKLGRERLMRILEQDRLGSCPIDSVKLSDAKEWALRMKEKGLSYKTINNDKRSLKAAFY
TAIQDDCIRKNPFDFQLSDVLDDDTEPKVPLTPAQEESFLSFIQGDKVYQKHYDAIVILLGTGLKISELCGLTDKDLDFE
NRVIIVSHQLLRNTGVGYYIDEPKTQSGVRKIPMNEEVYQAFQRVIKNRKGAKPFIIDGYANFLFLKQNGYPMTAVDYGG
MFGRLVKKYNKSHEEALPKTTTPHAMRHTFCTRLANAGMNPKALQYIMGHSNITMTLNYYAHATFDSARAEMERLA

The query sequence (length=316) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6emy:B 316 315 0.9905 0.9905 0.9937 0.0 6emy:A, 6emz:A, 6emz:B, 6en0:A, 6en0:B, 6en1:A, 6en1:B, 6en2:A, 6en2:B
2 1aih:C 168 75 0.0886 0.1667 0.3733 3.34e-05
3 2a3v:B 320 195 0.1424 0.1406 0.2308 5.91e-04 2a3v:A, 2a3v:C, 2a3v:D
4 5dor:B 161 56 0.0633 0.1242 0.3571 0.007
5 5jjv:B 356 278 0.2057 0.1826 0.2338 0.32 5jjv:A, 5jk0:A, 5jk0:C, 5jk0:B, 5jk0:D
6 1dp5:A 329 42 0.0570 0.0547 0.4286 1.2 1dpj:A, 1fmu:A, 1fq4:A, 1fq5:A, 1fq6:A, 1fq7:A, 1fq8:A, 1g0v:A, 2jxr:A
7 3dcm:X 188 74 0.0728 0.1223 0.3108 1.9
8 8of9:A 254 69 0.0633 0.0787 0.2899 2.1 8rqu:B
9 7doo:A 260 93 0.0759 0.0923 0.2581 3.3 7ddm:A, 7doo:B, 7doo:C
10 4xiy:A 328 71 0.0633 0.0610 0.2817 4.3 4xiy:B, 4xiy:C, 4xiy:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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