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BioLiP
>protein
SEKIAIRDFQVGDLVLIILDERHDNYVLFTVSPTLYFLHSESLPALDLKPGEGASGASRRPWVLGKVMEKEYCQAKKAQN
RFKVPLGTKFYRVKAVSWN

The query sequence (length=99) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8yfk:G 99 99 1.0000 1.0000 1.0000 2.05e-71 7czm:A, 7d0e:A, 8yfk:A, 8yfk:C, 8yfk:E, 8yfl:A, 8yfl:C, 8yfm:A, 8yfm:D, 8yfn:A, 8yfn:C
2 7czm:B 94 99 0.8889 0.9362 0.8889 2.98e-59
3 4d9u:A 307 30 0.1313 0.0423 0.4333 0.093 4d9t:A, 4jg6:A, 4jg7:A, 4jg8:A, 4m8t:A, 4mao:A, 5o1s:A
4 1dcq:A 276 44 0.1414 0.0507 0.3182 0.69
5 4o2z:A 363 41 0.1313 0.0358 0.3171 0.80
6 3ml1:B 109 30 0.1414 0.1284 0.4667 2.5 3o5a:B
7 3gc8:A 347 81 0.1717 0.0490 0.2099 3.2 3gc8:B, 3gc9:A, 3gc9:B, 3gp0:A, 8ygw:A
8 5wvd:A 241 32 0.1212 0.0498 0.3750 4.2
9 1avf:J 322 48 0.1313 0.0404 0.2708 6.0 1avf:A
10 7t80:A 216 28 0.1313 0.0602 0.4643 8.8 7t80:B
11 7m0r:E 458 25 0.1111 0.0240 0.4400 9.3 7m0r:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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