Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
RRYRWRIQTAWDAGTVGYSLFQKFTERVKELTDGQLEVQPFPAGAVVGTFDMFDAVKTGVLDGMNPFTLYWAGRMPVTAF
LSSYALGLDRPDQWETWFYSLGGLDIARRAFAEQGLFYVGPVQHDLNIIHSKKPIRRFEDFKGVKLRVPGGMIAEVFAAA
GASTVLLPGGEVYPALERGVIDAADFVGPAVNYNLGFHQVAKYIIMGPPETPAIHQPVDLMDFTINLNRWRSLPKPLQER
FIAAVHEYSWIHYAGIQKANLEAWPKYRQAGVEVIRLSNEDVRKFRRLAIPIWFKWAKMDKYSREAFASQLEYMKGIGYV
TDEELKGLSL

The query sequence (length=330) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2zzv:A 330 330 1.0000 1.0000 1.0000 0.0 2zzv:B, 2zzw:A, 2zzw:B, 2zzx:C
2 7e9y:A 563 182 0.5424 0.3179 0.9835 2.29e-125
3 7e9y:A 563 148 0.4485 0.2629 1.0000 6.21e-102
4 4pe3:A 315 321 0.3030 0.3175 0.3115 6.80e-47
5 7ug8:B 330 301 0.2788 0.2788 0.3056 6.34e-36 7ug8:A
6 4pet:A 329 274 0.2455 0.2462 0.2956 1.36e-35 4pet:B
7 5cm6:A 331 265 0.2364 0.2356 0.2943 7.77e-35 5cm6:B
8 4yic:A 344 294 0.2455 0.2355 0.2755 8.62e-29 4yic:B, 4yzz:A
9 2hzl:B 337 224 0.1818 0.1780 0.2679 2.25e-18 2hzl:A
10 4x8r:A 304 291 0.2303 0.2500 0.2612 5.87e-13 4x8r:B
11 4p56:B 317 166 0.1576 0.1640 0.3133 1.88e-12 4p56:A, 4p56:C
12 4n6d:A 319 285 0.1939 0.2006 0.2246 2.21e-12
13 4p8b:A 314 285 0.2121 0.2229 0.2456 6.31e-12
14 4ovt:A 301 175 0.1697 0.1860 0.3200 2.10e-11 4ovt:B
15 4x04:A 301 262 0.1939 0.2126 0.2443 4.47e-11 4x04:B, 4x04:C, 4x04:D
16 7t3e:A 300 298 0.2152 0.2367 0.2383 4.60e-11 7t3e:B
17 4n15:A 301 276 0.1909 0.2093 0.2283 7.37e-11 4n17:A
18 4nap:D 310 281 0.1879 0.2000 0.2206 7.59e-11 4nap:A, 4nap:B, 4nap:C, 4pgn:A, 4pgn:B, 4pgn:C, 4pgn:D, 4pgp:A, 4pgp:B, 4pgp:C, 4pgp:D
19 4xf5:A 317 246 0.1606 0.1672 0.2154 1.88e-10 4uab:A, 4uab:B, 4xf5:B
20 4mnc:A 305 289 0.2121 0.2295 0.2422 4.84e-10 4mni:A
21 7nra:BBB 328 292 0.2000 0.2012 0.2260 4.98e-10 7nra:AAA
22 4ovr:A 298 222 0.1818 0.2013 0.2703 5.79e-10 4ovr:B
23 8te9:B 309 294 0.2061 0.2201 0.2313 7.09e-10 8te9:A
24 4nhb:B 311 173 0.1606 0.1704 0.3064 9.10e-10 4nhb:A
25 3b50:A 310 321 0.2091 0.2226 0.2150 9.22e-10 2cex:A, 2cex:B, 2cex:C, 2cex:D, 2cey:A, 8cp7:A, 6h75:A, 6h76:A, 2v4c:A, 2wx9:A, 2wyk:A, 2wyp:A, 2xa5:A, 2xwi:A, 2xwk:A, 2xwo:A, 2xwv:A, 2xxk:A
26 4xfe:A 306 154 0.1364 0.1471 0.2922 9.62e-10
27 4mij:A 302 287 0.2242 0.2450 0.2578 2.81e-09 4mhf:A
28 4mag:A 307 289 0.1970 0.2117 0.2249 4.01e-09 7a5q:A, 7a5q:B
29 4pbq:A 304 149 0.1394 0.1513 0.3087 9.86e-09 4pbq:B, 4pbq:C
30 4n8y:A 300 278 0.2152 0.2367 0.2554 1.35e-08 4n8y:B
31 3gyy:D 311 308 0.2212 0.2347 0.2370 1.37e-08 3gyy:A, 3gyy:B, 3gyy:C, 2vpn:A, 2vpn:B, 2vpo:A, 2vpo:B
32 3fxb:A 310 301 0.2121 0.2258 0.2326 2.22e-08 3fxb:B
33 4pc9:A 300 215 0.1758 0.1933 0.2698 4.02e-08 4pcd:A
34 4n8g:A 325 173 0.1424 0.1446 0.2717 8.06e-08 4n8g:B, 4n8g:C, 4n8g:D
35 4pdd:A 303 280 0.1879 0.2046 0.2214 8.14e-08 4pdd:B, 4pdd:C
36 4mmp:A 308 206 0.1576 0.1688 0.2524 1.18e-07
37 4oan:A 312 240 0.1788 0.1891 0.2458 1.56e-07 4oan:B
38 4ngu:A 317 171 0.1424 0.1483 0.2749 1.85e-07
39 4mnp:A 305 211 0.1485 0.1607 0.2322 2.58e-07
40 7bbr:A 310 276 0.1727 0.1839 0.2065 2.88e-07 7bcn:A, 7bco:A, 7bco:B, 7bcp:A, 7bcr:A
41 7nrr:AAA 329 173 0.1273 0.1277 0.2428 3.12e-07 7nrr:BBB, 7nsw:AAA, 7nsw:BBB, 7ntd:AAA, 7ntd:BBB, 7nte:A, 7nte:B
42 4pfb:A 308 186 0.1545 0.1656 0.2742 3.13e-07
43 7nqg:AAA 317 290 0.1879 0.1956 0.2138 3.18e-07
44 4pf8:A 300 186 0.1485 0.1633 0.2634 7.64e-07 4pf8:B
45 4nx1:A 308 186 0.1667 0.1786 0.2957 1.38e-06 4nx1:B, 4ovp:A, 4ovp:B
46 4p3l:A 303 190 0.1455 0.1584 0.2526 3.26e-06 4p1l:A, 4p1l:B
47 4pdh:A 301 301 0.2152 0.2359 0.2359 6.60e-06
48 5i7i:B 320 171 0.1394 0.1437 0.2690 1.48e-05 5i7i:A, 5izz:A
49 4pai:A 308 191 0.1606 0.1721 0.2775 1.56e-05
50 4o8m:A 303 167 0.1424 0.1551 0.2814 3.34e-05 4o8m:B, 4o8m:C, 4o8m:D, 4o8m:E, 4o8m:F, 4o8m:G, 4o8m:H
51 4ovq:A 302 262 0.2000 0.2185 0.2519 3.84e-05
52 4n91:A 308 198 0.1515 0.1623 0.2525 7.20e-04
53 4n6k:A 311 57 0.0667 0.0707 0.3860 0.004
54 2pfz:A 301 182 0.1182 0.1296 0.2143 0.017
55 6cus:A 87 53 0.0667 0.2529 0.4151 0.038 6cv8:A, 6cw4:A
56 2pfy:A 301 55 0.0576 0.0631 0.3455 0.046 2pfy:B, 2pfy:C, 2pfy:D
57 6wgm:A 304 160 0.1121 0.1217 0.2313 0.10
58 6mfv:A 641 83 0.0758 0.0390 0.3012 0.39 6mfv:B, 6mfv:C, 6mfv:D
59 1fny:A 234 55 0.0606 0.0855 0.3636 1.5 1fnz:A
60 2rfb:A 338 73 0.0485 0.0473 0.2192 3.7 2rfb:B, 2rfb:C, 2rfc:A, 2rfc:B, 2rfc:C, 2rfc:D
61 2oox:E 333 71 0.0515 0.0511 0.2394 4.9 2oox:G, 2ooy:G, 2ooy:E, 2qr1:G, 2qr1:E, 2qrc:G, 2qrc:E, 2qrd:G, 2qrd:E, 2qre:G, 2qre:E
62 8i54:A 1113 71 0.0606 0.0180 0.2817 9.0
63 8h9d:A 1114 71 0.0606 0.0180 0.2817 9.0

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218