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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QALLIKVPTEIVVKVVDDVDVAAPAVGQVGKFDDELYDEAGAQIGTSSGNFRIEYVRPTDGGLLTYYQEDITLSDGVIHA
EGWADFNDVRTSKWVFYPATGVSGRYLGLTGFRQWRMTGVRKSAEARILLGE

The query sequence (length=132) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7pxo:AAA 136 132 1.0000 0.9706 1.0000 3.30e-94 7pxo:BBB, 7pxo:DDD
2 8of7:A 139 91 0.2727 0.2590 0.3956 1.45e-16
3 8of7:B 119 107 0.2803 0.3109 0.3458 1.10e-13
4 7x81:A 145 94 0.2424 0.2207 0.3404 2.84e-04 7x81:B, 7x86:A, 7x86:B, 7x86:C, 7x86:D
5 5bu3:A 181 79 0.1894 0.1381 0.3165 0.001 5bu3:B, 5bu3:C, 5bu3:D, 7dvk:A, 7dvk:B, 7dvk:C, 7dvk:D
6 8do6:H 327 88 0.1667 0.0673 0.2500 0.46 7uzz:E, 7v00:E, 7v01:E, 7v02:E
7 6nnw:A 208 125 0.2045 0.1298 0.2160 1.3 6nnw:B
8 5l43:A 662 77 0.1818 0.0363 0.3117 1.4 5l43:B, 5l44:A, 5l44:B
9 6sga:F7 662 32 0.0985 0.0196 0.4062 1.4 7pua:F7, 7pub:F7, 6sgb:F7
10 1t3q:B 786 50 0.1364 0.0229 0.3600 1.9 1t3q:E
11 6wj6:D 342 43 0.1212 0.0468 0.3721 2.2 7n8o:D, 7n8o:d, 7rcv:D, 7rcv:d, 8tow:D, 8tow:d, 8wql:DD, 8wql:DE, 8wql:D1, 8wql:d1, 8wql:dD, 8wql:dE
12 8am5:D 278 41 0.1136 0.0540 0.3659 2.8 8asl:D
13 4gmj:B 264 61 0.1212 0.0606 0.2623 5.6 7ax1:B, 4gmj:D, 4gmj:F
14 4j1q:A 417 60 0.1288 0.0408 0.2833 6.1
15 5ixo:A 596 28 0.0833 0.0185 0.3929 7.6 5ixq:A, 5ixt:A, 5iyv:A, 5iyx:A
16 1f6m:A 320 26 0.0985 0.0406 0.5000 8.7 1cl0:A, 1f6m:B, 1f6m:E, 1f6m:F, 1tde:A, 1tdf:A, 1trb:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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