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BioLiP Library
>protein
GRPRAINKHEQEQISRLLEKGHPRQQLAIIFGIGVSTLYRYFPASSIKKRMN

The query sequence (length=52) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1hcr:A 52 52 1.0000 1.0000 1.0000 1.63e-33 1ijw:C, 1jj6:C, 1jj8:C, 1jko:C, 1jkp:C, 1jkq:C, 1jkr:C
2 4m6f:A 188 44 0.4423 0.1223 0.5227 3.36e-10
3 6sup:A 2128 28 0.2500 0.0061 0.4643 0.83
4 5c6o:A 446 37 0.2500 0.0291 0.3514 4.0
5 3mzo:B 211 31 0.1731 0.0427 0.2903 5.2 3mzo:A, 3mzo:C
6 4ip4:A 421 20 0.1538 0.0190 0.4000 5.3 4ip4:B, 4ip5:A, 4ip5:B
7 2wtz:B 508 27 0.1923 0.0197 0.3704 5.4 2wtz:A, 2wtz:D, 2xja:A, 2xja:B, 2xja:C, 2xja:D
8 5fmp:A 184 12 0.1538 0.0435 0.6667 6.2 5aqc:A, 5aqc:B, 5cw8:A, 5cw8:B, 5cxi:A, 5cxi:B, 5fmp:B, 5ua1:B, 5ua1:A, 5ua2:A
9 5kis:A 1446 24 0.2115 0.0076 0.4583 6.2
10 4c0z:F 209 32 0.2115 0.0526 0.3438 6.3 4c0z:A, 4c0z:B, 4c0z:C, 4c0z:D, 4c0z:E, 4c0z:G, 4c0z:H, 4c0z:I, 4c0z:J, 4c0z:K, 4c0z:L
11 3bqk:A 338 15 0.1538 0.0237 0.5333 6.8 3bql:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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