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BioLiP Library
>protein
ESLHDQIDMLTKTNLQLTTQSQNLLSKLELAQSKESKLLENLNLLKNENENLNSIFERKNKKLKELEKDYSELSNRYNEQ
KEKMDQLSKL

The query sequence (length=90) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4ll7:A 94 90 1.0000 0.9574 1.0000 5.58e-55 4ll7:C, 4ll7:E, 4ll7:F, 4ll7:H
2 3kb2:A 171 51 0.2111 0.1111 0.3725 0.51 3kb2:B
3 5xg3:B 374 44 0.1889 0.0455 0.3864 0.55 5h67:A, 5xg3:A
4 3pih:A 836 57 0.1889 0.0203 0.2982 0.70
5 1z6r:A 382 45 0.1778 0.0419 0.3556 1.2 3bp8:A, 3bp8:B, 1z6r:B, 1z6r:C, 1z6r:D
6 2dq3:A 425 64 0.2000 0.0424 0.2812 1.4 2dq3:B
7 3k6b:A 217 27 0.1333 0.0553 0.4444 1.7
8 4qgr:A 376 43 0.1778 0.0426 0.3721 2.2 4qgr:B
9 4wa2:A 491 31 0.1111 0.0204 0.3226 2.2 6bkq:A, 6bkq:C, 6bkq:E, 6cex:A, 6cex:C, 6cex:E, 1mqm:A, 1mqm:D, 1mqm:G, 1mqn:A, 1mqn:D, 5t6n:A, 5t6n:E, 5t6n:C, 6tzb:A, 6tzb:C, 6tzb:E, 2vir:C, 2vis:C, 2vit:C, 5vtq:A, 5vtq:C, 5vtq:E, 5vtr:A, 5vtr:C, 5vtr:E, 5vtv:A, 5vtv:C, 5vtv:E, 5vtw:C, 5vtw:E, 5vtw:A, 5vty:A, 5vty:C, 5vty:E, 5vu4:A, 5vu4:C, 5vu4:E, 4wa2:B, 4wa2:C, 4wa2:E, 6y5j:E, 2ypg:A, 2ypg:C, 2ypg:E
10 6n9l:A 625 38 0.1556 0.0224 0.3684 4.4
11 6wzt:A 494 31 0.1111 0.0202 0.3226 4.7 6aos:A, 6aot:A, 6aou:A, 6aov:A, 6bkr:A, 6bks:A, 6bkt:A, 6cex:D, 6cex:B, 3eym:B, 3eym:D, 3eym:F, 8faw:A, 1hgg:B, 1hgg:D, 1hgg:F, 1hgh:B, 1hgh:D, 1hgh:F, 1htm:B, 1htm:D, 1htm:F, 6nsa:A, 6nsb:A, 6nsf:A, 6nsg:A, 5t6n:B, 5t6n:D, 5t6n:F, 8tj6:B, 8tj9:A, 8tja:A, 8tjb:A, 4uny:D, 4uo0:D, 8uwa:B, 4wea:A, 2yp3:A, 2yp4:A, 2yp5:A, 2yp8:A, 2yp9:A
12 3llx:A 373 33 0.1556 0.0375 0.4242 4.8
13 8u7b:C 507 34 0.1667 0.0296 0.4412 5.3
14 1mje:A 600 62 0.1889 0.0283 0.2742 5.6
15 6f32:A 434 40 0.1222 0.0253 0.2750 6.0 6f32:B, 6f7l:A, 6f7l:B, 6f7v:A, 6f7v:B, 6fjh:A, 6fjh:B
16 1orr:A 338 62 0.2111 0.0562 0.3065 6.7 1orr:B, 1orr:C, 1orr:D
17 5lkd:A 352 32 0.1222 0.0312 0.3438 7.8 5lkd:B
18 7xz4:A 203 77 0.2333 0.1034 0.2727 8.3
19 7pw9:A 1952 74 0.1889 0.0087 0.2297 9.4 7pw4:A, 7pw5:A, 7pw6:A, 7pw7:A, 7pw8:A, 6z3r:A
20 2dw4:A 634 64 0.1889 0.0268 0.2656 9.7
21 6yw5:YY 99 27 0.0889 0.0808 0.2963 9.8 6ywe:YY, 6ywx:YY, 6ywy:YY
22 6az0:C 439 87 0.2556 0.0524 0.2644 9.9 6az0:D, 6az0:A, 6az0:B, 6az0:E, 6az0:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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