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I-TASSER D-I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK D-QUARK DRfold DRfold2 LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP Library
>protein
EEIKGKTFLPAIFVGYQRSRAKQRENVALVKVSGIYTRAETDKVLGRLIAIIHSKSGKPIFGKICRPHGNSGMVRARFYT
NLPGQLMGHKVRVFYDNI

The query sequence (length=98) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7pwg:f 123 98 1.0000 0.7967 1.0000 3.01e-69 8br8:Lg, 8brm:Lg, 8bsi:Lg, 8bsj:Lg, 8btd:Lg, 8btr:Lg, 8fru:f, 7pwo:f2
2 8btk:Bf 110 104 0.4592 0.4091 0.4327 5.14e-25 7a01:x2, 8a3d:Z, 5aj0:Af, 8b5l:f, 8b6c:f, 9bdl:AL33, 9bdn:AL33, 9bdp:AL33, 7bhp:Lf, 8bhf:S1, 8bpo:e2, 7cpu:Lf, 7cpv:Lf, 4d5y:f, 4d67:f, 6d90:f, 6d9j:f, 9f1b:Bf, 9f1c:Bf, 9f1d:Bf, 7f5s:Lf, 8fkp:LT, 8fkq:LT, 8fkr:LT, 8fks:LT, 8fkt:LT, 8fku:LT, 8fkv:LT, 8fkw:LT, 8fkx:LT, 8fky:LT, 8fkz:LT, 8fl0:LT, 8fl2:LT, 8fl3:LT, 8fl4:LT, 8fl6:LT, 8fl7:LT, 8fl9:LT, 8fla:LT, 8flb:LT, 8flc:LT, 8fld:LT, 8fle:LT, 8flf:LT, 6frk:f, 6ftg:f, 6fti:f, 6ftj:f, 8g5y:Lf, 8g5z:Lf, 8g60:Lf, 8g61:Lf, 8g6j:Lf, 8glp:Lf, 6gz3:Af, 6gz4:Af, 6gz5:Af, 6hcf:f3, 6hcj:f3, 6hcm:f3, 6hcq:f3, 8idt:n, 8idy:n, 8ie3:n, 8ifd:2Z, 8ife:2Z, 8ine:n, 8inf:n, 8ink:n, 6ip5:2Z, 6ip6:2Z, 6ip8:2Z, 8ipd:n, 8ipx:n, 8ipy:n, 8ir1:n, 8ir3:n, 3j7o:f, 3j7p:f, 3j7q:f, 3j7r:f, 3j92:f, 3jag:f, 3jah:f, 3jai:f, 3jaj:f, 3jan:f, 8jdj:k, 8jdk:k, 8jdl:k, 8jdm:k, 8k2c:Lf, 5lks:Lf, 6lqm:u, 6lsr:u, 6lss:n, 7ls1:Z2, 7ls2:Z2, 6lu8:n, 5lzs:f, 5lzt:f, 5lzu:f, 5lzv:f, 5lzw:f, 5lzx:f, 5lzy:f, 5lzz:f, 7mdz:f, 6mtb:f, 6mtc:f, 6mtd:f, 6mte:f, 7nfx:f, 7nwg:f3, 7nwh:f, 7nwi:f, 7o7y:Bf, 7o7z:Bf, 7o80:Bf, 7o81:Bf, 7obr:f, 8ohd:Lf, 8oj0:Lf, 8oj5:Lf, 8oj8:Lf, 6ole:g, 6olf:g, 6olg:Af, 6oli:g, 6olz:Af, 6om0:g, 6om7:g, 7ow7:Z, 7oyc:f1, 7oyd:f, 8p2k:Bf, 6p5i:Af, 6p5j:Af, 6p5k:Af, 6p5n:Af, 8q7z:Bf, 8q87:Bf, 8qfd:f, 7qgg:g, 8qoi:Lf, 7qvp:Lf, 7qvp:Mf, 7qwq:f, 7qwr:f, 7qws:f, 6qzp:Lf, 6r5q:f, 6r6g:f, 6r6p:f, 6r7q:f, 8rjb:f, 8rjc:f, 8rjd:f, 8scb:f, 6sgc:f2, 6swa:d, 5t2c:Z, 6t59:f3, 7tm3:f, 7toq:AL33, 7tor:AL33, 7tut:f, 7ucj:f, 7uck:f, 4ug0:Lf, 4ujc:Bf, 4ujd:Af, 4uje:Cf, 4v6x:Cf, 6w6l:g, 6xa1:Lf, 7xnx:Lf, 7xny:Lf, 8xsx:Lf, 8xsy:Lf, 8xsz:Lf, 6y0g:Lf, 8y0w:Lf, 8y0x:Lf, 6y2l:Lf, 6y57:Lf, 6y6x:Lf, 8yoo:Lf, 8yop:Lf, 6z6l:Lf, 6z6m:Lf, 6z6n:Lf, 7zjw:Li, 7zjx:Li, 6zm7:Lf, 6zme:Lf, 6zmi:Lf, 6zmo:Lf, 6zvk:x2
3 7oya:f1 107 101 0.4490 0.4112 0.4356 8.73e-24 7oyb:f1
4 8azw:S 111 96 0.4082 0.3604 0.4167 4.68e-23 8b2l:S3, 7qiw:h, 7qiz:h
5 4v7e:Cf 111 94 0.3980 0.3514 0.4149 4.04e-21 8jiv:Cf, 4v3p:Lj
6 8ip8:MB 110 105 0.4082 0.3636 0.3810 9.11e-21 8ipa:MB, 8ipb:MB
7 4v6u:Bc 87 85 0.3571 0.4023 0.4118 1.67e-16
8 5xy3:f 97 90 0.3571 0.3608 0.3889 3.30e-16
9 5xxb:e 105 95 0.3469 0.3238 0.3579 3.73e-16
10 9bh5:Cf 117 103 0.3469 0.2906 0.3301 6.70e-16 9cai:Cf
11 4v6w:Cf 157 104 0.3571 0.2229 0.3365 6.98e-16 6xu6:Cf, 6xu7:Cf, 6xu8:Cf
12 8aaf:S 106 88 0.3469 0.3208 0.3864 2.20e-15 8agt:S, 8agu:S, 8agv:S, 8agw:S, 8agx:S, 8agz:S, 5apn:f, 5apo:f, 7azy:v, 7b7d:Lb, 8bip:Lf, 8bjq:Lf, 8bn3:O3, 8bqd:BK, 8bqx:BK, 7bt6:f, 7btb:f, 6c0f:f, 6cb1:f, 8ccs:R, 8cdl:R, 8cdr:R, 8ceh:R, 8cf5:R, 8cg8:R, 8cgn:R, 8civ:R, 8cku:R, 8cmj:R, 5dat:O3, 5dat:o3, 5dc3:O3, 5dc3:o3, 5dge:O3, 5dge:o3, 5dgf:O3, 5dgf:o3, 5dgv:O3, 5dgv:o3, 6elz:f, 6em1:f, 6em3:f, 6em4:f, 6em5:f, 8eub:Af, 8evp:Af, 8evq:Af, 8evr:Af, 8evs:Af, 8evt:Af, 8ewb:Af, 8ewc:Af, 5fci:O3, 5fci:o3, 5fcj:O3, 5fcj:o3, 6ft6:f, 5gak:h, 6gq1:f, 6gqb:f, 6gqv:f, 5h4p:f, 6hd7:h, 8hfr:f7, 6hhq:AG, 6hhq:DH, 5i4l:O3, 5i4l:o3, 6i7o:BK, 6i7o:YK, 3j6x:73, 3j6y:73, 3j77:83, 3j78:83, 3jct:f, 5jcs:f, 5juo:KA, 5jup:KA, 5jus:KA, 5jut:KA, 5juu:KA, 8k2d:Lf, 8k82:Lf, 5lyb:O3, 5lyb:o3, 5m1j:f5, 6m62:f, 5mc6:BK, 5mei:AG, 5mei:DH, 7mpi:Af, 7mpj:Af, 6n8j:f, 6n8k:f, 6n8l:f, 6n8m:s, 6n8n:s, 6n8o:s, 7n8b:Af, 7nac:f, 5ndg:O3, 5ndg:o3, 5ndv:O3, 5ndv:o3, 5ndw:O3, 5ndw:o3, 7nrc:Lh, 7nrd:Lh, 5obm:O3, 5obm:o3, 7of1:f, 7oh3:f, 7ohp:f, 7ohq:f, 7ohr:f, 7ohs:f, 7oht:f, 7ohu:f, 7ohv:f, 7ohw:f, 7ohx:f, 7ohy:f, 6oig:f, 5on6:AG, 5on6:DH, 7osa:eL33, 7osm:eL33, 8p8m:RF, 8p8n:RF, 8p8u:RF, 8pfr:RF, 6q8y:BK, 6qik:f, 6qt0:f, 6qtz:f, 7r7a:f, 6r84:h, 6r86:h, 6r87:h, 6ri5:f, 7rr5:Lf, 6rzz:f, 6s05:f, 6s47:Ah, 6snt:ak, 6sv4:BK, 6sv4:YK, 6sv4:ZK, 6t4q:Lf, 5t62:s, 5t6r:s, 6t7i:Lf, 6t7t:Lf, 6t83:fy, 6t83:Q, 5tbw:AG, 5tbw:DH, 6tb3:BK, 5tga:O3, 5tga:o3, 5tgm:O3, 5tgm:o3, 6tnu:BK, 7too:AL33, 7top:AL33, 7u0h:f, 4u3m:O3, 4u3m:o3, 4u3n:O3, 4u3n:o3, 4u3u:O3, 4u3u:o3, 4u4n:O3, 4u4n:o3, 4u4o:O3, 4u4o:o3, 4u4q:O3, 4u4q:o3, 4u4r:O3, 4u4r:o3, 4u4u:O3, 4u4u:o3, 4u4y:O3, 4u4y:o3, 4u4z:O3, 4u4z:o3, 4u50:O3, 4u50:o3, 4u51:O3, 4u51:o3, 4u52:O3, 4u52:o3, 4u53:O3, 4u53:o3, 4u55:O3, 4u55:o3, 4u56:O3, 4u56:o3, 4u6f:O3, 4u6f:o3, 7ug6:f, 7uoo:f, 7uqb:f, 7uqz:f, 7v08:f, 4v6i:Bj, 4v7f:e, 4v88:Bf, 4v88:Df, 4v8t:f, 4v8y:Bf, 4v8z:Bf, 8v83:f, 8v84:f, 8v87:f, 4v91:f, 6woo:f, 6xiq:f, 6xir:f, 8y0u:Lf, 6ylg:f, 6ylh:f, 6ylx:f, 6yly:f, 5z3g:j, 7z34:f, 6z6j:Lf, 6z6k:Lf, 7zpq:Be, 7zrs:Be, 7zs5:Bg, 7zuw:Be, 7zux:Ee, 7zw0:Li
13 5it7:ff 105 88 0.3571 0.3333 0.3977 2.44e-15 6uz7:Bf
14 6zj3:Lv 114 103 0.3571 0.3070 0.3398 5.93e-15
15 3j79:9 103 90 0.2959 0.2816 0.3222 1.15e-14 3jbn:A9, 3jbo:A9, 3jbp:A9, 8tpu:A9, 5umd:9
16 7qep:O3 109 99 0.3469 0.3119 0.3434 3.96e-13
17 8esq:f 106 96 0.3265 0.3019 0.3333 4.34e-13 8esr:f, 8etc:f, 8etg:f, 8eth:f, 8eti:f, 8etj:f, 8eug:f, 8eui:f, 8eup:f, 8euy:f, 8ev3:f
18 8c3a:AG 106 88 0.3061 0.2830 0.3409 5.94e-13 8c3a:CA, 8cq7:AG, 8cq7:CA, 8cqw:AG, 8cqw:CA, 8cre:AG, 8cre:CA, 8oeq:AG, 8oeq:CA, 7pzy:AG, 7q08:AG, 7q0f:AG, 7q0p:AG, 7q0r:AG, 8q5i:AG
19 8e5t:f 88 81 0.3265 0.3636 0.3951 9.55e-13
20 8i9p:Lf 108 88 0.3163 0.2870 0.3523 2.38e-12 8i9r:Lf, 8i9t:Lf, 8i9v:Lf, 8i9w:Lf, 8i9x:Lf, 8i9y:Lf, 8i9z:Lf, 8ia0:Lf, 7olc:Lf, 7old:Lf, 8oo0:Lf, 8pv1:Lf, 8pv2:Lf, 8pv3:Lf, 8pv4:Lf, 8pv5:Lf, 8pv6:Lf, 8pv7:Lf, 8pv8:Lf, 8pvk:Lf, 8pvl:Lf, 7r81:h1, 7z3n:Lf, 7z3o:Lf
21 4v8p:AH 107 99 0.3469 0.3178 0.3434 6.14e-12 4v8p:DH, 4v8p:FH, 4v8p:HH
22 6zu5:LFF 104 89 0.3265 0.3077 0.3596 6.87e-11
23 5t5h:l 136 105 0.2755 0.1985 0.2571 4.29e-10
24 8rxh:Lg 143 105 0.2857 0.1958 0.2667 1.66e-09 8a3w:g, 8a98:g, 6az3:g, 3jcs:g, 8ovj:g, 8rxx:Lg, 5t2a:j
25 6rm3:LFF 96 89 0.2449 0.2500 0.2697 2.27e-09
26 8ova:Bl 144 105 0.2653 0.1806 0.2476 6.59e-09 8ove:Bl, 4v8m:Bl
27 6skg:Bf 86 84 0.2551 0.2907 0.2976 6.26e-08
28 8p5d:LFF 111 94 0.2755 0.2432 0.2872 4.16e-05 8p60:LFF, 8p60:KFF, 7qca:LFF
29 5e3i:B 398 84 0.2755 0.0678 0.3214 0.31 5e3i:A
30 7qw6:A 556 34 0.1224 0.0216 0.3529 0.46 7qw5:A, 7qw7:A
31 5ahj:I 204 43 0.1531 0.0735 0.3488 3.5 3bdm:I, 5bou:I, 5bou:W, 5bxl:I, 5bxl:W, 5bxn:I, 5cgf:I, 5cgf:W, 5cgg:I, 5cgh:I, 5cgi:I, 5cgi:W, 5cz4:I, 5cz4:W, 5cz5:I, 5cz6:I, 5cz6:W, 5cz7:I, 5cz8:I, 5cz8:W, 5cz9:I, 5cza:I, 5cza:W, 5d0s:I, 5d0t:I, 5d0v:I, 5d0v:W, 5d0w:I, 5d0z:I, 3d29:I, 3d29:W, 5dki:I, 5dkj:I, 2f16:I, 2f16:W, 5fg7:I, 5fg7:W, 5fg9:I, 5fga:W, 5fgd:W, 5fge:I, 5fgf:I, 5fgf:W, 5fgg:W, 5fgi:I, 5fhs:I, 5fhs:W, 1fnt:J, 1fnt:X, 9fst:I, 9fst:W, 9fsv:I, 9fsv:W, 9ft0:I, 9ft1:I, 9ft1:W, 4fzc:I, 4fzc:W, 4fzg:I, 4fzg:W, 1g0u:I, 1g0u:W, 4g4s:J, 1g65:I, 6g7f:W, 6g8m:I, 6g8m:W, 4gk7:I, 4gk7:W, 2gpl:I, 2gpl:W, 3gpj:I, 3gpj:W, 6h39:I, 4hrc:W, 4hrd:I, 6htb:I, 6htb:W, 6htc:I, 6htc:W, 6htd:I, 6htd:W, 6htp:I, 6htp:W, 6hub:I, 6huc:I, 6huc:W, 6huq:I, 6huq:W, 6huu:I, 6huu:W, 6hv3:I, 6hv3:W, 6hv4:I, 6hv5:I, 6hv5:W, 6hv7:I, 6hv7:W, 6hva:I, 6hvr:I, 6hvr:W, 6hvs:I, 6hvs:W, 6hvt:I, 6hvt:W, 6hvu:I, 6hvu:W, 6hvv:I, 6hvv:W, 6hvw:I, 6hvw:W, 6hvx:I, 6hvy:I, 6hvy:W, 6hw0:I, 6hw0:W, 6hw3:I, 6hw3:W, 6hw4:I, 6hw4:W, 6hw5:I, 6hw5:W, 6hw6:I, 6hw6:W, 6hw7:I, 6hw7:W, 6hw8:I, 6hwa:I, 6hwb:I, 6hwc:W, 6hwd:I, 6hwd:W, 6hwe:I, 6hwe:W, 6hwf:I, 6hwf:W, 4inr:I, 4inr:W, 4int:I, 4int:W, 4inu:I, 4inu:W, 1jd2:I, 1jd2:P, 5jhr:I, 5jhs:I, 4jsu:I, 4jsu:W, 5l52:I, 5l54:I, 5l5a:I, 5l5b:I, 5l5d:I, 5l5e:I, 5l5e:W, 5l5f:I, 5l5f:W, 5l5h:I, 5l5i:I, 5l5j:I, 5l5j:W, 5l5o:I, 5l5p:I, 5l5p:W, 5l5q:I, 5l5s:I, 5l5t:I, 5l5u:I, 5l5v:I, 5l5w:I, 5l5x:I, 5l5y:I, 5l5y:W, 5l5z:I, 5l60:I, 5l61:I, 5l62:I, 5l63:I, 5l63:W, 5l65:I, 5l66:I, 5l67:I, 5l68:I, 5l68:W, 5l69:I, 5l6a:I, 5l6b:I, 5l6b:W, 5l6c:I, 5lai:I, 5laj:I, 5ltt:I, 3mg0:I, 3mg4:I, 3mg6:I, 3mg7:I, 3mg8:I, 4nnn:I, 4nnw:I, 4no1:I, 4no6:I, 4no8:I, 7o2l:W, 3oeu:I, 3oev:I, 8ohz:I, 8ohz:W, 8oi1:W, 8olr:I, 8olr:W, 4qby:I, 4qlq:I, 4qls:I, 4qlt:I, 4qlv:I, 4quy:I, 4qv1:I, 4qv6:I, 4qv7:I, 4qv8:I, 4qv9:I, 4qvl:I, 4qvl:W, 4qvm:I, 4qvm:W, 4qvn:I, 4qvp:I, 4qvp:W, 4qvq:I, 4qvv:I, 4qvw:I, 4qvy:I, 4qvy:W, 4qw0:I, 4qw0:W, 4qw1:I, 4qw1:W, 4qw4:I, 4qw4:W, 4qw6:I, 4qw7:I, 4qwf:I, 4qwg:I, 4qwg:W, 4qwi:I, 4qwi:W, 4qwj:I, 4qwj:W, 4qwk:I, 4qwk:W, 4qwl:I, 4qwl:W, 4qwr:I, 4qwr:W, 4qws:I, 4qwx:I, 4qxj:I, 4qz2:I, 4qz3:I, 4qz5:I, 4qz5:W, 4qz7:I, 4qzw:I, 4qzx:I, 4r02:I, 4r17:I, 4r18:I, 8rhk:I, 8rhk:W, 8rhl:I, 4rur:I, 4rur:W, 1ryp:J, 1ryp:X, 3sdi:I, 3sdi:W, 3sdk:I, 3un4:I, 3un4:W, 4y69:I, 4y6a:I, 4y6z:I, 4y70:I, 4y74:I, 4y75:I, 4y77:I, 4y78:I, 4y7w:I, 4y7x:I, 4y7y:I, 4y80:I, 4y81:I, 4y82:I, 4y84:I, 4y8g:I, 4y8h:I, 4y8i:I, 4y8j:I, 4y8k:I, 4y8l:I, 4y8m:I, 4y8m:W, 4y8o:I, 4y8p:I, 4y8q:I, 4y8r:I, 4y8r:W, 4y8s:I, 4y9y:I, 4y9y:W, 4ya0:I, 4ya1:I, 4ya1:W, 4ya2:I, 4ya4:I, 4ya4:W, 4ya7:I, 4ya9:I, 4ya9:W, 4z1l:I, 4z1l:W, 2zcy:I, 2zcy:W, 6zou:I, 6zou:W, 6zp6:I, 6zp6:W, 6zp8:I, 6zp8:W
32 4ac9:C 471 46 0.1531 0.0318 0.3261 4.6 4ac9:A, 4ac9:B, 4aca:B, 4aca:C, 4acb:A, 4acb:B, 4acb:C
33 8w9f:G 69 19 0.1020 0.1449 0.5263 6.1
34 7coy:aL 147 27 0.1122 0.0748 0.4074 6.5 7coy:cL, 7coy:bL, 7dwq:L
35 6x5x:A 200 46 0.1327 0.0650 0.2826 7.3
36 6o9l:T 237 56 0.1531 0.0633 0.2679 8.0 8bvw:R, 8byq:R, 8bz1:R, 7eg8:T, 7ega:T, 7egb:T, 7egc:T, 7ena:FB, 7enc:FB, 8gxq:FB, 8gxs:FB, 5iy6:T, 5iy7:T, 5iy8:T, 5iy9:T, 5iya:T, 5iyb:T, 5iyc:T, 5iyd:T, 7lbm:T, 7nvr:R, 7nvs:R, 7nvt:R, 7nvu:R, 7nvy:R, 7nvz:R, 7nw0:R, 8s51:R, 8s52:R, 8s5n:R, 8wak:T, 8wal:T, 8wan:T, 8wao:T, 8wap:T, 8waq:T, 8war:T, 8was:T, 7zwd:R, 7zx7:R, 7zx8:R
37 7uny:C 127 45 0.1531 0.1181 0.3333 8.2 7uny:B
38 8kd3:D 231 19 0.1020 0.0433 0.5263 10.0 8kd3:F, 8kd4:D, 8kd4:F, 8kd5:D, 8kd5:F, 8kd6:D, 8kd6:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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