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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
AEQVHLSGPTMGTTYNIKYIQQPGIADSKTLQTEIDRLLEEVNDQMSTYRKDSELSRFNQHTSSEPFAVSTQTLTVVKEA
IRLNGLTEGALDVTVGPLVNLWGFGPEARPDVVPTDEELNARRAITGIEHLTIEGNTLSKDIPELYVDLSTIAKGWGVDV
VADYLQSQGIENYMVEIGGEIRLKGLNRDGVPWRIAIEKPVQEIIEPGDYAIATSGGIIDPTTGRPINNRVVSVTVLDKS
CMTADGLATGLMVMGEERGMAVAEANQIPVLMIVKTDDGFKEYASSSFKPFL

The query sequence (length=292) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6nxi:A 309 308 0.9966 0.9417 0.9448 0.0 6nxj:A, 6nxj:B
2 2o18:C 313 308 0.4384 0.4089 0.4156 5.44e-79 2o18:A, 2o18:B, 2o18:D, 4xgv:A, 4xgv:B, 4xgv:C, 4xgv:D, 4xgw:A, 4xgw:B, 4xgw:C, 4xgw:D, 4xgx:B
3 3pnd:C 323 319 0.4555 0.4118 0.4169 3.66e-77 3pnd:A, 3pnd:B, 3pnd:D
4 5mgy:H 316 301 0.4144 0.3829 0.4020 4.55e-76 5mgy:B, 5mgy:G, 5mgy:A, 5mgy:C, 5mgy:D, 5mgy:F
5 4xgx:A 290 298 0.4041 0.4069 0.3960 8.19e-68
6 7esa:A 322 241 0.2123 0.1925 0.2573 1.85e-21 7esb:A, 7esc:A, 7f2u:A, 7f2u:B
7 4ifu:A 330 282 0.2534 0.2242 0.2624 6.09e-19 4ifw:A, 4ifx:A, 4ifz:A, 4ig1:A, 7mgt:A, 4xdr:A, 4xdt:A, 4xdu:A
8 3b1c:A 387 112 0.0856 0.0646 0.2232 1.1 3b1c:B, 3b1c:C, 3b1c:D, 3b1d:A, 3b1d:B, 3b1d:C, 3b1d:D, 3b1e:A, 3b1e:B, 3b1e:C, 3b1e:D
9 7x7i:A 583 77 0.0788 0.0395 0.2987 1.7 7x7i:B, 7x7j:A, 7x7j:B, 7x7k:A, 7x7k:B
10 2btq:A 436 35 0.0445 0.0298 0.3714 1.8 2bto:A, 2bto:B, 5o09:1A, 5o09:2A, 5o09:3A, 5o09:4A, 5o09:5A, 5o09:6A, 5o09:7A, 5o09:8A, 7quq:A, 7quq:C, 7quq:E
11 5n80:A 358 123 0.0856 0.0698 0.2033 4.2 6y6i:A
12 7die:A 164 74 0.0616 0.1098 0.2432 4.9 7die:B, 7die:C, 7die:D, 7die:E, 7die:F
13 6sl1:A 2652 50 0.0616 0.0068 0.3600 5.4 6sky:A, 6sky:B
14 6skz:A 2638 50 0.0616 0.0068 0.3600 5.6 6sl0:A, 6sl0:B
15 2aa1:B 146 72 0.0651 0.1301 0.2639 6.1 2aa1:D
16 1uod:A 336 69 0.0685 0.0595 0.2899 9.0 3pnq:D, 1uod:B, 1uoe:A, 1uoe:B
17 1yum:A 212 26 0.0342 0.0472 0.3846 9.8 1yum:B, 1yum:C, 1yum:D, 1yun:A, 1yun:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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