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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 389 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8xlp:1 (2.57) BS01 II0 N/A N/A N/A N/A
    2 8xlp:1 (2.57) BS02 CLA N/A N/A N/A N/A
    3 8xlp:1 (2.57) BS03 CLA N/A N/A N/A N/A
    4 8xlp:1 (2.57) BS04 CLA N/A N/A N/A N/A
    5 8xlp:1 (2.57) BS05 CLA N/A N/A N/A N/A
    6 8xlp:1 (2.57) BS06 KC2 N/A N/A N/A N/A
    7 8xlp:1 (2.57) BS07 CLA N/A N/A N/A N/A
    8 8xlp:1 (2.57) BS08 CLA N/A N/A N/A N/A
    9 8xlp:1 (2.57) BS09 CLA N/A N/A N/A N/A
    10 8xlp:1 (2.57) BS10 CLA N/A N/A N/A N/A
    11 8xlp:1 (2.57) BS11 KC2 N/A N/A N/A N/A
    12 8xlp:1 (2.57) BS12 KC2 N/A N/A N/A N/A
    13 8xlp:1 (2.57) BS13 KC2 N/A N/A N/A N/A
    14 8xlp:1 (2.57) BS14 CLA N/A N/A N/A N/A
    15 8xlp:1 (2.57) BS15 CLA N/A N/A N/A N/A
    16 8xlp:1 (2.57) BS16 II0 N/A N/A N/A N/A
    17 8xlp:1 (2.57) BS17 II0 N/A N/A N/A N/A
    18 8xlp:1 (2.57) BS18 II0 N/A N/A N/A N/A
    19 8xlp:1 (2.57) BS19 II0 N/A N/A N/A N/A
    20 8xlp:1 (2.57) BS20 IHT N/A N/A N/A N/A
    21 8xlp:2 (2.57) BS01 CLA N/A N/A N/A N/A
    22 8xlp:2 (2.57) BS02 CLA N/A N/A N/A N/A
    23 8xlp:2 (2.57) BS03 CLA N/A N/A N/A N/A
    24 8xlp:2 (2.57) BS04 CLA N/A N/A N/A N/A
    25 8xlp:2 (2.57) BS05 CLA N/A N/A N/A N/A
    26 8xlp:2 (2.57) BS06 CLA N/A N/A N/A N/A
    27 8xlp:2 (2.57) BS07 CLA N/A N/A N/A N/A
    28 8xlp:2 (2.57) BS08 CLA N/A N/A N/A N/A
    29 8xlp:2 (2.57) BS09 CLA N/A N/A N/A N/A
    30 8xlp:2 (2.57) BS10 KC2 N/A N/A N/A N/A
    31 8xlp:2 (2.57) BS11 CLA N/A N/A N/A N/A
    32 8xlp:2 (2.57) BS12 CLA N/A N/A N/A N/A
    33 8xlp:2 (2.57) BS13 II0 N/A N/A N/A N/A
    34 8xlp:2 (2.57) BS14 II0 N/A N/A N/A N/A
    35 8xlp:2 (2.57) BS15 II0 N/A N/A N/A N/A
    36 8xlp:2 (2.57) BS16 II0 N/A N/A N/A N/A
    37 8xlp:2 (2.57) BS17 IHT N/A N/A N/A N/A
    38 8xlp:2 (2.57) BS18 II0 N/A N/A N/A N/A
    39 8xlp:3 (2.57) BS01 CLA N/A N/A N/A N/A
    40 8xlp:3 (2.57) BS02 CLA N/A N/A N/A N/A
    41 8xlp:3 (2.57) BS03 CLA N/A N/A N/A N/A
    42 8xlp:3 (2.57) BS04 CLA N/A N/A N/A N/A
    43 8xlp:3 (2.57) BS05 KC2 N/A N/A N/A N/A
    44 8xlp:3 (2.57) BS06 CLA N/A N/A N/A N/A
    45 8xlp:3 (2.57) BS07 CLA N/A N/A N/A N/A
    46 8xlp:3 (2.57) BS08 CLA N/A N/A N/A N/A
    47 8xlp:3 (2.57) BS09 CLA N/A N/A N/A N/A
    48 8xlp:3 (2.57) BS10 CLA N/A N/A N/A N/A
    49 8xlp:3 (2.57) BS11 CLA N/A N/A N/A N/A
    50 8xlp:3 (2.57) BS12 II0 N/A N/A N/A N/A
    51 8xlp:3 (2.57) BS13 II0 N/A N/A N/A N/A
    52 8xlp:3 (2.57) BS14 II0 N/A N/A N/A N/A
    53 8xlp:3 (2.57) BS15 II0 N/A N/A N/A N/A
    54 8xlp:3 (2.57) BS16 WVN N/A N/A N/A N/A
    55 8xlp:4 (2.57) BS01 CLA N/A N/A N/A N/A
    56 8xlp:4 (2.57) BS02 CLA N/A N/A N/A N/A
    57 8xlp:4 (2.57) BS03 CLA N/A N/A N/A N/A
    58 8xlp:4 (2.57) BS04 KC2 N/A N/A N/A N/A
    59 8xlp:4 (2.57) BS05 CLA N/A N/A N/A N/A
    60 8xlp:4 (2.57) BS06 CLA N/A N/A N/A N/A
    61 8xlp:4 (2.57) BS07 CLA N/A N/A N/A N/A
    62 8xlp:4 (2.57) BS08 CLA N/A N/A N/A N/A
    63 8xlp:4 (2.57) BS09 KC2 N/A N/A N/A N/A
    64 8xlp:4 (2.57) BS10 CLA N/A N/A N/A N/A
    65 8xlp:4 (2.57) BS11 CLA N/A N/A N/A N/A
    66 8xlp:4 (2.57) BS12 II0 N/A N/A N/A N/A
    67 8xlp:4 (2.57) BS13 II0 N/A N/A N/A N/A
    68 8xlp:4 (2.57) BS14 II0 N/A N/A N/A N/A
    69 8xlp:4 (2.57) BS15 II0 N/A N/A N/A N/A
    70 8xlp:4 (2.57) BS16 IHT N/A N/A N/A N/A
    71 8xlp:4 (2.57) BS17 II0 N/A N/A N/A N/A
    72 8xlp:5 (2.57) BS01 CLA N/A N/A N/A N/A
    73 8xlp:5 (2.57) BS02 CLA N/A N/A N/A N/A
    74 8xlp:5 (2.57) BS03 II0 N/A N/A N/A N/A
    75 8xlp:5 (2.57) BS04 CLA N/A N/A N/A N/A
    76 8xlp:5 (2.57) BS05 CLA N/A N/A N/A N/A
    77 8xlp:5 (2.57) BS06 CLA N/A N/A N/A N/A
    78 8xlp:5 (2.57) BS07 CLA N/A N/A N/A N/A
    79 8xlp:5 (2.57) BS08 CLA N/A N/A N/A N/A
    80 8xlp:5 (2.57) BS09 CLA N/A N/A N/A N/A
    81 8xlp:5 (2.57) BS10 CLA N/A N/A N/A N/A
    82 8xlp:5 (2.57) BS11 CLA N/A N/A N/A N/A
    83 8xlp:5 (2.57) BS12 CLA N/A N/A N/A N/A
    84 8xlp:5 (2.57) BS13 KC2 N/A N/A N/A N/A
    85 8xlp:5 (2.57) BS14 CLA N/A N/A N/A N/A
    86 8xlp:5 (2.57) BS15 CLA N/A N/A N/A N/A
    87 8xlp:5 (2.57) BS16 II0 N/A N/A N/A N/A
    88 8xlp:5 (2.57) BS17 II0 N/A N/A N/A N/A
    89 8xlp:5 (2.57) BS18 II0 N/A N/A N/A N/A
    90 8xlp:5 (2.57) BS19 II0 N/A N/A N/A N/A
    91 8xlp:5 (2.57) BS20 IHT N/A N/A N/A N/A
    92 8xlp:5 (2.57) BS21 CLA N/A N/A N/A N/A
    93 8xlp:5 (2.57) BS22 II0 N/A N/A N/A N/A
    94 8xlp:5 (2.57) BS23 WVN N/A N/A N/A N/A
    95 8xlp:6 (2.57) BS01 CLA N/A N/A N/A N/A
    96 8xlp:6 (2.57) BS02 CLA N/A N/A N/A N/A
    97 8xlp:6 (2.57) BS03 CLA N/A N/A N/A N/A
    98 8xlp:6 (2.57) BS04 CLA N/A N/A N/A N/A
    99 8xlp:6 (2.57) BS05 KC2 N/A N/A N/A N/A
    100 8xlp:6 (2.57) BS06 CLA N/A N/A N/A N/A
    101 8xlp:6 (2.57) BS07 CLA N/A N/A N/A N/A
    102 8xlp:6 (2.57) BS08 CLA N/A N/A N/A N/A
    103 8xlp:6 (2.57) BS09 KC2 N/A N/A N/A N/A
    104 8xlp:6 (2.57) BS10 CLA N/A N/A N/A N/A
    105 8xlp:6 (2.57) BS11 CLA N/A N/A N/A N/A
    106 8xlp:6 (2.57) BS12 II0 N/A N/A N/A N/A
    107 8xlp:6 (2.57) BS13 II0 N/A N/A N/A N/A
    108 8xlp:6 (2.57) BS14 II0 N/A N/A N/A N/A
    109 8xlp:6 (2.57) BS15 II0 N/A N/A N/A N/A
    110 8xlp:6 (2.57) BS16 WVN N/A N/A N/A N/A
    111 8xlp:A (2.57) BS01 FE2 N/A GO:0005506 ... A6MVT2 N/A
    112 8xlp:A (2.57) BS02 CLA N/A GO:0005506 ... A6MVT2 N/A
    113 8xlp:A (2.57) BS03 CLA N/A GO:0005506 ... A6MVT2 N/A
    114 8xlp:A (2.57) BS04 PHO N/A GO:0005506 ... A6MVT2 N/A
    115 8xlp:A (2.57) BS05 CLA N/A GO:0005506 ... A6MVT2 N/A
    116 8xlp:A (2.57) BS06 WVN N/A GO:0005506 ... A6MVT2 N/A
    117 8xlp:A (2.57) BS07 BCT N/A GO:0005506 ... A6MVT2 N/A
    118 8xlp:A (2.57) BS08 MN N/A GO:0005506 ... A6MVT2 N/A
    119 8xlp:A (2.57) BS09 MN N/A GO:0005506 ... A6MVT2 N/A
    120 8xlp:A (2.57) BS10 CLA N/A GO:0005506 ... A6MVT2 N/A
    121 8xlp:A (2.57) BS11 CLA N/A GO:0005506 ... A6MVT2 N/A
    122 8xlp:A (2.57) BS12 PHO N/A GO:0005506 ... A6MVT2 N/A
    123 8xlp:A (2.57) BS13 CLA N/A GO:0005506 ... A6MVT2 N/A
    124 8xlp:B (2.57) BS01 CLA N/A GO:0009507 ... A6MW31 N/A
    125 8xlp:B (2.57) BS02 CLA N/A GO:0009507 ... A6MW31 N/A
    126 8xlp:B (2.57) BS03 CLA N/A GO:0009507 ... A6MW31 N/A
    127 8xlp:B (2.57) BS04 CLA N/A GO:0009507 ... A6MW31 N/A
    128 8xlp:B (2.57) BS05 CLA N/A GO:0009507 ... A6MW31 N/A
    129 8xlp:B (2.57) BS06 CLA N/A GO:0009507 ... A6MW31 N/A
    130 8xlp:B (2.57) BS07 CLA N/A GO:0009507 ... A6MW31 N/A
    131 8xlp:B (2.57) BS08 CLA N/A GO:0009507 ... A6MW31 N/A
    132 8xlp:B (2.57) BS09 CLA N/A GO:0009507 ... A6MW31 N/A
    133 8xlp:B (2.57) BS10 CLA N/A GO:0009507 ... A6MW31 N/A
    134 8xlp:B (2.57) BS11 CLA N/A GO:0009507 ... A6MW31 N/A
    135 8xlp:B (2.57) BS12 CLA N/A GO:0009507 ... A6MW31 N/A
    136 8xlp:B (2.57) BS13 CLA N/A GO:0009507 ... A6MW31 N/A
    137 8xlp:B (2.57) BS14 CLA N/A GO:0009507 ... A6MW31 N/A
    138 8xlp:B (2.57) BS15 CLA N/A GO:0009507 ... A6MW31 N/A
    139 8xlp:B (2.57) BS16 CLA N/A GO:0009507 ... A6MW31 N/A
    140 8xlp:B (2.57) BS17 WVN N/A GO:0009507 ... A6MW31 N/A
    141 8xlp:B (2.57) BS18 WVN N/A GO:0009507 ... A6MW31 N/A
    142 8xlp:B (2.57) BS19 WVN N/A GO:0009507 ... A6MW31 N/A
    143 8xlp:C (2.57) BS01 CLA N/A N/A A6MVR2 N/A
    144 8xlp:C (2.57) BS02 CLA N/A N/A A6MVR2 N/A
    145 8xlp:C (2.57) BS03 CLA N/A N/A A6MVR2 N/A
    146 8xlp:C (2.57) BS04 CLA N/A N/A A6MVR2 N/A
    147 8xlp:C (2.57) BS05 CLA N/A N/A A6MVR2 N/A
    148 8xlp:C (2.57) BS06 CLA N/A N/A A6MVR2 N/A
    149 8xlp:C (2.57) BS07 CLA N/A N/A A6MVR2 N/A
    150 8xlp:C (2.57) BS08 CLA N/A N/A A6MVR2 N/A
    151 8xlp:C (2.57) BS09 CLA N/A N/A A6MVR2 N/A
    152 8xlp:C (2.57) BS10 CLA N/A N/A A6MVR2 N/A
    153 8xlp:C (2.57) BS11 CLA N/A N/A A6MVR2 N/A
    154 8xlp:C (2.57) BS12 CLA N/A N/A A6MVR2 N/A
    155 8xlp:C (2.57) BS13 CLA N/A N/A A6MVR2 N/A
    156 8xlp:C (2.57) BS14 WVN N/A N/A A6MVR2 N/A
    157 8xlp:C (2.57) BS15 WVN N/A N/A A6MVR2 N/A
    158 8xlp:C (2.57) BS16 WVN N/A N/A A6MVR2 N/A
    159 8xlp:D (2.57) BS01 FE2 N/A GO:0005506 ... A6MVR3 N/A
    160 8xlp:D (2.57) BS02 CLA N/A GO:0005506 ... A6MVR3 N/A
    161 8xlp:D (2.57) BS03 PHO N/A GO:0005506 ... A6MVR3 N/A
    162 8xlp:D (2.57) BS04 BCT N/A GO:0005506 ... A6MVR3 N/A
    163 8xlp:D (2.57) BS05 CLA N/A GO:0005506 ... A6MVR3 N/A
    164 8xlp:D (2.57) BS06 CLA N/A GO:0005506 ... A6MVR3 N/A
    165 8xlp:D (2.57) BS07 PHO N/A GO:0005506 ... A6MVR3 N/A
    166 8xlp:D (2.57) BS08 CLA N/A GO:0005506 ... A6MVR3 N/A
    167 8xlp:D (2.57) BS09 CLA N/A GO:0005506 ... A6MVR3 N/A
    168 8xlp:D (2.57) BS10 WVN N/A GO:0005506 ... A6MVR3 N/A
    169 8xlp:E (2.57) BS01 HEM N/A GO:0005506 ... A6MVV5 N/A
    170 8xlp:F (2.57) BS01 WVN N/A GO:0005506 ... A6MVV4 N/A
    171 8xlp:F (2.57) BS02 HEM N/A GO:0005506 ... A6MVV4 N/A
    172 8xlp:G (2.57) BS01 CLA N/A N/A N/A N/A
    173 8xlp:G (2.57) BS02 CLA N/A N/A N/A N/A
    174 8xlp:G (2.57) BS03 CLA N/A N/A N/A N/A
    175 8xlp:G (2.57) BS04 CLA N/A N/A N/A N/A
    176 8xlp:G (2.57) BS05 CLA N/A N/A N/A N/A
    177 8xlp:G (2.57) BS06 CLA N/A N/A N/A N/A
    178 8xlp:G (2.57) BS07 CLA N/A N/A N/A N/A
    179 8xlp:G (2.57) BS08 CLA N/A N/A N/A N/A
    180 8xlp:H (2.57) BS01 CLA N/A GO:0009507 ... A6MW35 N/A
    181 8xlp:H (2.57) BS02 CLA N/A GO:0009507 ... A6MW35 N/A
    182 8xlp:H (2.57) BS03 CLA N/A GO:0009507 ... A6MW35 N/A
    183 8xlp:H (2.57) BS04 CLA N/A GO:0009507 ... A6MW35 N/A
    184 8xlp:H (2.57) BS05 WVN N/A GO:0009507 ... A6MW35 N/A
    185 8xlp:I (2.57) BS01 CLA N/A GO:0005737 ... A6MVW0 N/A
    186 8xlp:I (2.57) BS02 WVN N/A GO:0005737 ... A6MVW0 N/A
    187 8xlp:K (2.57) BS01 CLA N/A GO:0005737 ... A6MVZ3 N/A
    188 8xlp:K (2.57) BS02 CLA N/A GO:0005737 ... A6MVZ3 N/A
    189 8xlp:K (2.57) BS03 WVN N/A GO:0005737 ... A6MVZ3 N/A
    190 8xlp:K (2.57) BS04 WVN N/A GO:0005737 ... A6MVZ3 N/A
    191 8xlp:L (2.57) BS01 CLA N/A GO:0005737 ... A6MVV3 N/A
    192 8xlp:N (2.57) BS01 II0 N/A N/A N/A N/A
    193 8xlp:N (2.57) BS02 CLA N/A N/A N/A N/A
    194 8xlp:N (2.57) BS03 CLA N/A N/A N/A N/A
    195 8xlp:N (2.57) BS04 CLA N/A N/A N/A N/A
    196 8xlp:N (2.57) BS05 CLA N/A N/A N/A N/A
    197 8xlp:N (2.57) BS06 KC2 N/A N/A N/A N/A
    198 8xlp:N (2.57) BS07 CLA N/A N/A N/A N/A
    199 8xlp:N (2.57) BS08 CLA N/A N/A N/A N/A
    200 8xlp:N (2.57) BS09 CLA N/A N/A N/A N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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