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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 396 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8wql:A1 (3.5) BS01 peptide N/A N/A N/A N/A
    2 8wql:A1 (3.5) BS02 OEX N/A N/A N/A N/A
    3 8wql:A1 (3.5) BS03 CLA N/A N/A N/A N/A
    4 8wql:A1 (3.5) BS04 CLA N/A N/A N/A N/A
    5 8wql:A1 (3.5) BS05 BCT N/A N/A N/A N/A
    6 8wql:A1 (3.5) BS06 PHO N/A N/A N/A N/A
    7 8wql:A1 (3.5) BS07 CLA N/A N/A N/A N/A
    8 8wql:A1 (3.5) BS08 CLA N/A N/A N/A N/A
    9 8wql:A1 (3.5) BS09 PHO N/A N/A N/A N/A
    10 8wql:A1 (3.5) BS10 CLA N/A N/A N/A N/A
    11 8wql:A1 (3.5) BS11 CLA N/A N/A N/A N/A
    12 8wql:AD (3.5) BS01 peptide N/A N/A N/A N/A
    13 8wql:AD (3.5) BS02 OEX N/A N/A N/A N/A
    14 8wql:AD (3.5) BS03 CLA N/A N/A N/A N/A
    15 8wql:AD (3.5) BS04 CLA N/A N/A N/A N/A
    16 8wql:AD (3.5) BS05 BCT N/A N/A N/A N/A
    17 8wql:AD (3.5) BS06 CLA N/A N/A N/A N/A
    18 8wql:AD (3.5) BS07 CLA N/A N/A N/A N/A
    19 8wql:AD (3.5) BS08 PHO N/A N/A N/A N/A
    20 8wql:AD (3.5) BS09 PHO N/A N/A N/A N/A
    21 8wql:AD (3.5) BS10 CLA N/A N/A N/A N/A
    22 8wql:AD (3.5) BS11 CLA N/A N/A N/A N/A
    23 8wql:AE (3.5) BS01 peptide N/A N/A N/A N/A
    24 8wql:AE (3.5) BS02 OEX N/A N/A N/A N/A
    25 8wql:AE (3.5) BS03 CLA N/A N/A N/A N/A
    26 8wql:AE (3.5) BS04 CLA N/A N/A N/A N/A
    27 8wql:AE (3.5) BS05 BCT N/A N/A N/A N/A
    28 8wql:AE (3.5) BS06 CLA N/A N/A N/A N/A
    29 8wql:AE (3.5) BS07 CLA N/A N/A N/A N/A
    30 8wql:AE (3.5) BS08 PHO N/A N/A N/A N/A
    31 8wql:AE (3.5) BS09 PHO N/A N/A N/A N/A
    32 8wql:AE (3.5) BS10 CLA N/A N/A N/A N/A
    33 8wql:AE (3.5) BS11 CLA N/A N/A N/A N/A
    34 8wql:B1 (3.5) BS01 CLA N/A N/A N/A N/A
    35 8wql:B1 (3.5) BS02 CLA N/A N/A N/A N/A
    36 8wql:B1 (3.5) BS03 CLA N/A N/A N/A N/A
    37 8wql:B1 (3.5) BS04 CLA N/A N/A N/A N/A
    38 8wql:B1 (3.5) BS05 CLA N/A N/A N/A N/A
    39 8wql:B1 (3.5) BS06 CLA N/A N/A N/A N/A
    40 8wql:B1 (3.5) BS07 CLA N/A N/A N/A N/A
    41 8wql:B1 (3.5) BS08 CLA N/A N/A N/A N/A
    42 8wql:B1 (3.5) BS09 CLA N/A N/A N/A N/A
    43 8wql:B1 (3.5) BS10 CLA N/A N/A N/A N/A
    44 8wql:B1 (3.5) BS11 CLA N/A N/A N/A N/A
    45 8wql:B1 (3.5) BS12 CLA N/A N/A N/A N/A
    46 8wql:B1 (3.5) BS13 CLA N/A N/A N/A N/A
    47 8wql:B1 (3.5) BS14 CLA N/A N/A N/A N/A
    48 8wql:B1 (3.5) BS15 CLA N/A N/A N/A N/A
    49 8wql:B1 (3.5) BS16 CLA N/A N/A N/A N/A
    50 8wql:BD (3.5) BS01 CLA N/A N/A N/A N/A
    51 8wql:BD (3.5) BS02 CLA N/A N/A N/A N/A
    52 8wql:BD (3.5) BS03 CLA N/A N/A N/A N/A
    53 8wql:BD (3.5) BS04 CLA N/A N/A N/A N/A
    54 8wql:BD (3.5) BS05 CLA N/A N/A N/A N/A
    55 8wql:BD (3.5) BS06 CLA N/A N/A N/A N/A
    56 8wql:BD (3.5) BS07 CLA N/A N/A N/A N/A
    57 8wql:BD (3.5) BS08 CLA N/A N/A N/A N/A
    58 8wql:BD (3.5) BS09 CLA N/A N/A N/A N/A
    59 8wql:BD (3.5) BS10 CLA N/A N/A N/A N/A
    60 8wql:BD (3.5) BS11 CLA N/A N/A N/A N/A
    61 8wql:BD (3.5) BS12 CLA N/A N/A N/A N/A
    62 8wql:BD (3.5) BS13 CLA N/A N/A N/A N/A
    63 8wql:BD (3.5) BS14 CLA N/A N/A N/A N/A
    64 8wql:BD (3.5) BS15 CLA N/A N/A N/A N/A
    65 8wql:BD (3.5) BS16 CLA N/A N/A N/A N/A
    66 8wql:BE (3.5) BS01 CLA N/A N/A N/A N/A
    67 8wql:BE (3.5) BS02 CLA N/A N/A N/A N/A
    68 8wql:BE (3.5) BS03 CLA N/A N/A N/A N/A
    69 8wql:BE (3.5) BS04 CLA N/A N/A N/A N/A
    70 8wql:BE (3.5) BS05 CLA N/A N/A N/A N/A
    71 8wql:BE (3.5) BS06 CLA N/A N/A N/A N/A
    72 8wql:BE (3.5) BS07 CLA N/A N/A N/A N/A
    73 8wql:BE (3.5) BS08 CLA N/A N/A N/A N/A
    74 8wql:BE (3.5) BS09 CLA N/A N/A N/A N/A
    75 8wql:BE (3.5) BS10 CLA N/A N/A N/A N/A
    76 8wql:BE (3.5) BS11 CLA N/A N/A N/A N/A
    77 8wql:BE (3.5) BS12 CLA N/A N/A N/A N/A
    78 8wql:BE (3.5) BS13 CLA N/A N/A N/A N/A
    79 8wql:BE (3.5) BS14 CLA N/A N/A N/A N/A
    80 8wql:BE (3.5) BS15 CLA N/A N/A N/A N/A
    81 8wql:BE (3.5) BS16 CLA N/A N/A N/A N/A
    82 8wql:C1 (3.5) BS01 CLA N/A N/A N/A N/A
    83 8wql:C1 (3.5) BS02 CLA N/A N/A N/A N/A
    84 8wql:C1 (3.5) BS03 CLA N/A N/A N/A N/A
    85 8wql:C1 (3.5) BS04 CLA N/A N/A N/A N/A
    86 8wql:C1 (3.5) BS05 CLA N/A N/A N/A N/A
    87 8wql:C1 (3.5) BS06 CLA N/A N/A N/A N/A
    88 8wql:C1 (3.5) BS07 CLA N/A N/A N/A N/A
    89 8wql:C1 (3.5) BS08 CLA N/A N/A N/A N/A
    90 8wql:C1 (3.5) BS09 CLA N/A N/A N/A N/A
    91 8wql:C1 (3.5) BS10 CLA N/A N/A N/A N/A
    92 8wql:C1 (3.5) BS11 CLA N/A N/A N/A N/A
    93 8wql:C1 (3.5) BS12 CLA N/A N/A N/A N/A
    94 8wql:C1 (3.5) BS13 CLA N/A N/A N/A N/A
    95 8wql:CD (3.5) BS01 CLA N/A N/A N/A N/A
    96 8wql:CD (3.5) BS02 CLA N/A N/A N/A N/A
    97 8wql:CD (3.5) BS03 CLA N/A N/A N/A N/A
    98 8wql:CD (3.5) BS04 CLA N/A N/A N/A N/A
    99 8wql:CD (3.5) BS05 CLA N/A N/A N/A N/A
    100 8wql:CD (3.5) BS06 CLA N/A N/A N/A N/A
    101 8wql:CD (3.5) BS07 CLA N/A N/A N/A N/A
    102 8wql:CD (3.5) BS08 CLA N/A N/A N/A N/A
    103 8wql:CD (3.5) BS09 CLA N/A N/A N/A N/A
    104 8wql:CD (3.5) BS10 CLA N/A N/A N/A N/A
    105 8wql:CD (3.5) BS11 CLA N/A N/A N/A N/A
    106 8wql:CD (3.5) BS12 CLA N/A N/A N/A N/A
    107 8wql:CD (3.5) BS13 CLA N/A N/A N/A N/A
    108 8wql:CE (3.5) BS01 CLA N/A N/A N/A N/A
    109 8wql:CE (3.5) BS02 CLA N/A N/A N/A N/A
    110 8wql:CE (3.5) BS03 CLA N/A N/A N/A N/A
    111 8wql:CE (3.5) BS04 CLA N/A N/A N/A N/A
    112 8wql:CE (3.5) BS05 CLA N/A N/A N/A N/A
    113 8wql:CE (3.5) BS06 CLA N/A N/A N/A N/A
    114 8wql:CE (3.5) BS07 CLA N/A N/A N/A N/A
    115 8wql:CE (3.5) BS08 CLA N/A N/A N/A N/A
    116 8wql:CE (3.5) BS09 CLA N/A N/A N/A N/A
    117 8wql:CE (3.5) BS10 CLA N/A N/A N/A N/A
    118 8wql:CE (3.5) BS11 CLA N/A N/A N/A N/A
    119 8wql:CE (3.5) BS12 CLA N/A N/A N/A N/A
    120 8wql:CE (3.5) BS13 CLA N/A N/A N/A N/A
    121 8wql:D1 (3.5) BS01 peptide N/A N/A N/A N/A
    122 8wql:D1 (3.5) BS02 CLA N/A N/A N/A N/A
    123 8wql:D1 (3.5) BS03 BCT N/A N/A N/A N/A
    124 8wql:D1 (3.5) BS04 PHO N/A N/A N/A N/A
    125 8wql:D1 (3.5) BS05 CLA N/A N/A N/A N/A
    126 8wql:D1 (3.5) BS06 CLA N/A N/A N/A N/A
    127 8wql:D1 (3.5) BS07 CLA N/A N/A N/A N/A
    128 8wql:D1 (3.5) BS08 FE2 N/A N/A N/A N/A
    129 8wql:D1 (3.5) BS09 PHO N/A N/A N/A N/A
    130 8wql:D1 (3.5) BS10 CLA N/A N/A N/A N/A
    131 8wql:D1 (3.5) BS11 CLA N/A N/A N/A N/A
    132 8wql:D1 (3.5) BS12 CLA N/A N/A N/A N/A
    133 8wql:DD (3.5) BS01 peptide N/A N/A N/A N/A
    134 8wql:DD (3.5) BS02 CLA N/A N/A N/A N/A
    135 8wql:DD (3.5) BS03 BCT N/A N/A N/A N/A
    136 8wql:DD (3.5) BS04 CLA N/A N/A N/A N/A
    137 8wql:DD (3.5) BS05 CLA N/A N/A N/A N/A
    138 8wql:DD (3.5) BS06 CLA N/A N/A N/A N/A
    139 8wql:DD (3.5) BS07 PHO N/A N/A N/A N/A
    140 8wql:DD (3.5) BS08 FE2 N/A N/A N/A N/A
    141 8wql:DD (3.5) BS09 PHO N/A N/A N/A N/A
    142 8wql:DD (3.5) BS10 CLA N/A N/A N/A N/A
    143 8wql:DD (3.5) BS11 CLA N/A N/A N/A N/A
    144 8wql:DD (3.5) BS12 CLA N/A N/A N/A N/A
    145 8wql:DE (3.5) BS01 peptide N/A N/A N/A N/A
    146 8wql:DE (3.5) BS02 CLA N/A N/A N/A N/A
    147 8wql:DE (3.5) BS03 BCT N/A N/A N/A N/A
    148 8wql:DE (3.5) BS04 CLA N/A N/A N/A N/A
    149 8wql:DE (3.5) BS05 CLA N/A N/A N/A N/A
    150 8wql:DE (3.5) BS06 CLA N/A N/A N/A N/A
    151 8wql:DE (3.5) BS07 PHO N/A N/A N/A N/A
    152 8wql:DE (3.5) BS08 FE2 N/A N/A N/A N/A
    153 8wql:DE (3.5) BS09 PHO N/A N/A N/A N/A
    154 8wql:DE (3.5) BS10 CLA N/A N/A N/A N/A
    155 8wql:DE (3.5) BS11 CLA N/A N/A N/A N/A
    156 8wql:DE (3.5) BS12 CLA N/A N/A N/A N/A
    157 8wql:E1 (3.5) BS01 HEM N/A N/A N/A N/A
    158 8wql:ED (3.5) BS01 HEM N/A N/A N/A N/A
    159 8wql:EE (3.5) BS01 HEM N/A N/A N/A N/A
    160 8wql:F1 (3.5) BS01 HEM N/A N/A N/A N/A
    161 8wql:FD (3.5) BS01 HEM N/A N/A N/A N/A
    162 8wql:FE (3.5) BS01 HEM N/A N/A N/A N/A
    163 8wql:H1 (3.5) BS01 CLA N/A N/A N/A N/A
    164 8wql:H1 (3.5) BS02 CLA N/A N/A N/A N/A
    165 8wql:H1 (3.5) BS03 CLA N/A N/A N/A N/A
    166 8wql:HD (3.5) BS01 CLA N/A N/A N/A N/A
    167 8wql:HD (3.5) BS02 CLA N/A N/A N/A N/A
    168 8wql:HD (3.5) BS03 CLA N/A N/A N/A N/A
    169 8wql:HE (3.5) BS01 CLA N/A N/A N/A N/A
    170 8wql:HE (3.5) BS02 CLA N/A N/A N/A N/A
    171 8wql:HE (3.5) BS03 CLA N/A N/A N/A N/A
    172 8wql:I1 (3.5) BS01 CLA N/A N/A N/A N/A
    173 8wql:ID (3.5) BS01 CLA N/A N/A N/A N/A
    174 8wql:IE (3.5) BS01 CLA N/A N/A N/A N/A
    175 8wql:K1 (3.5) BS01 CLA N/A N/A N/A N/A
    176 8wql:K1 (3.5) BS02 CLA N/A N/A N/A N/A
    177 8wql:K1 (3.5) BS03 CA N/A N/A N/A N/A
    178 8wql:KD (3.5) BS01 CLA N/A N/A N/A N/A
    179 8wql:KD (3.5) BS02 CLA N/A N/A N/A N/A
    180 8wql:KD (3.5) BS03 CA N/A N/A N/A N/A
    181 8wql:KE (3.5) BS01 CLA N/A N/A N/A N/A
    182 8wql:KE (3.5) BS02 CLA N/A N/A N/A N/A
    183 8wql:KE (3.5) BS03 CA N/A N/A N/A N/A
    184 8wql:L1 (3.5) BS01 peptide N/A N/A N/A N/A
    185 8wql:LD (3.5) BS01 peptide N/A N/A N/A N/A
    186 8wql:LE (3.5) BS01 peptide N/A N/A N/A N/A
    187 8wql:M1 (3.5) BS01 peptide N/A N/A N/A N/A
    188 8wql:MD (3.5) BS01 peptide N/A N/A N/A N/A
    189 8wql:ME (3.5) BS01 peptide N/A N/A N/A N/A
    190 8wql:U1 (3.5) BS01 CA N/A N/A N/A N/A
    191 8wql:UD (3.5) BS01 CA N/A N/A N/A N/A
    192 8wql:UE (3.5) BS01 CA N/A N/A N/A N/A
    193 8wql:V1 (3.5) BS01 HEM N/A N/A N/A N/A
    194 8wql:V1 (3.5) BS02 CA N/A N/A N/A N/A
    195 8wql:VD (3.5) BS01 HEM N/A N/A N/A N/A
    196 8wql:VD (3.5) BS02 CA N/A N/A N/A N/A
    197 8wql:VE (3.5) BS01 HEM N/A N/A N/A N/A
    198 8wql:VE (3.5) BS02 CA N/A N/A N/A N/A
    199 8wql:X1 (3.5) BS01 CLA N/A N/A N/A N/A
    200 8wql:XD (3.5) BS01 CLA N/A N/A N/A N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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