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BioLiP
Download all results in tab-seperated text for 68 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8rjc:1 (2.90061) BS01 rna ? GO:0005048 ... P38377 38896445
    2 8rjc:4 (2.90061) BS01 rna ? GO:0001501 ... A0A8C0RGL8 38896445
    3 8rjc:5 (2.90061) BS01 rna ? GO:0005789 ... P16967 38896445
    4 8rjc:7 (2.90061) BS01 rna ? GO:0005783 ... A0A8C0T6I4 38896445
    5 8rjc:A (2.90061) BS01 rna ? GO:0002181 ... G1TT27 38896445
    6 8rjc:B (2.90061) BS01 rna N/A GO:0003779 ... N/A 38896445
    7 8rjc:C (2.90061) BS01 rna ? GO:0003723 ... A0A5F9C3C5 38896445
    8 8rjc:C (2.90061) BS02 rna ? GO:0003723 ... A0A5F9C3C5 38896445
    9 8rjc:D (2.90061) BS01 rna ? GO:0000027 ... P19949 38896445
    10 8rjc:D (2.90061) BS02 rna ? GO:0000027 ... P19949 38896445
    11 8rjc:E (2.90061) BS01 rna ? GO:0000027 ... G1SKF7 38896445
    12 8rjc:F (2.90061) BS01 rna ? GO:0000463 ... G1TUB1 38896445
    13 8rjc:F (2.90061) BS02 rna ? GO:0000463 ... G1TUB1 38896445
    14 8rjc:G (2.90061) BS01 rna ? GO:0000470 ... G1STW0 38896445
    15 8rjc:G (2.90061) BS02 rna ? GO:0000470 ... G1STW0 38896445
    16 8rjc:H (2.90061) BS01 rna ? GO:0002181 ... G1SWI6 38896445
    17 8rjc:I (2.90061) BS01 rna ? GO:0000027 ... B7NZQ2 38896445
    18 8rjc:I (2.90061) BS02 rna ? GO:0000027 ... B7NZQ2 38896445
    19 8rjc:J (2.90061) BS01 rna ? GO:0003723 ... G1TUB8 38896445
    20 8rjc:J (2.90061) BS02 rna ? GO:0003723 ... G1TUB8 38896445
    21 8rjc:L (2.90061) BS01 rna ? GO:0003723 ... G1TKB3 38896445
    22 8rjc:L (2.90061) BS02 rna ? GO:0003723 ... G1TKB3 38896445
    23 8rjc:M (2.90061) BS01 rna ? GO:0003723 ... G1SZ12 38896445
    24 8rjc:N (2.90061) BS01 rna ? GO:0002181 ... G1T0C1 38896445
    25 8rjc:N (2.90061) BS02 rna ? GO:0002181 ... G1T0C1 38896445
    26 8rjc:O (2.90061) BS01 rna N/A GO:0003735 ... N/A 38896445
    27 8rjc:P (2.90061) BS01 rna ? GO:0002181 ... G1SCJ6 38896445
    28 8rjc:P (2.90061) BS02 rna ? GO:0002181 ... G1SCJ6 38896445
    29 8rjc:Q (2.90061) BS01 rna ? GO:0002181 ... G1TFE0 38896445
    30 8rjc:R (2.90061) BS01 rna ? GO:0003723 ... G1TJR3 38896445
    31 8rjc:S (2.90061) BS01 rna ? GO:0003735 ... A0A287APR1 38896445
    32 8rjc:S (2.90061) BS02 rna ? GO:0003735 ... A0A287APR1 38896445
    33 8rjc:T (2.90061) BS01 rna ? GO:0003735 ... G1SHQ2 38896445
    34 8rjc:T (2.90061) BS02 rna ? GO:0003735 ... G1SHQ2 38896445
    35 8rjc:U (2.90061) BS01 rna ? GO:0002181 ... G1TSG1 38896445
    36 8rjc:V (2.90061) BS01 rna ? GO:0000122 ... G1T6D1 38896445
    37 8rjc:W (2.90061) BS01 rna ? GO:0000027 ... G1SE28 38896445
    38 8rjc:X (2.90061) BS01 rna ? GO:0000027 ... G1SE76 38896445
    39 8rjc:X (2.90061) BS02 rna ? GO:0000027 ... G1SE76 38896445
    40 8rjc:Y (2.90061) BS01 rna ? GO:0002181 ... G1SQH0 38896445
    41 8rjc:Y (2.90061) BS02 rna ? GO:0002181 ... G1SQH0 38896445
    42 8rjc:Z (2.90061) BS01 rna ? GO:0003735 ... G1TXF6 38896445
    43 8rjc:a (2.90061) BS01 rna ? GO:0003735 ... G1SNY0 38896445
    44 8rjc:b (2.90061) BS01 rna ? GO:0002181 ... G1SGR6 38896445
    45 8rjc:c (2.90061) BS01 rna ? GO:0002181 ... G1TDL2 38896445
    46 8rjc:d (2.90061) BS01 rna ? GO:0002181 ... G1SHG0 38896445
    47 8rjc:e (2.90061) BS01 rna ? GO:0003735 ... G1TUN8 38896445
    48 8rjc:f (2.90061) BS01 rna ? GO:0000049 ... G1SF08 38896445
    49 8rjc:g (2.90061) BS01 rna ? GO:0003735 ... G1TXG5 38896445
    50 8rjc:g (2.90061) BS02 MG ? GO:0003735 ... G1TXG5 38896445
    51 8rjc:g (2.90061) BS03 ZN ? GO:0003735 ... G1TXG5 38896445
    52 8rjc:h (2.90061) BS01 rna ? GO:0000463 ... G1SIT5 38896445
    53 8rjc:h (2.90061) BS02 rna ? GO:0000463 ... G1SIT5 38896445
    54 8rjc:i (2.90061) BS01 rna ? GO:0002181 ... G1TTQ5 38896445
    55 8rjc:j (2.90061) BS01 rna ? GO:0003723 ... U3KPD5 38896445
    56 8rjc:j (2.90061) BS02 rna ? GO:0003723 ... U3KPD5 38896445
    57 8rjc:j (2.90061) BS03 ZN ? GO:0003723 ... U3KPD5 38896445
    58 8rjc:k (2.90061) BS01 rna ? GO:0003735 ... G1U001 38896445
    59 8rjc:l (2.90061) BS01 rna ? GO:0003735 ... G1TTN1 38896445
    60 8rjc:l (2.90061) BS02 rna ? GO:0003735 ... G1TTN1 38896445
    61 8rjc:m (2.90061) BS01 rna N/A GO:0003735 ... N/A 38896445
    62 8rjc:m (2.90061) BS02 ZN N/A GO:0003735 ... N/A 38896445
    63 8rjc:o (2.90061) BS01 rna ? GO:0003735 ... G1T040 38896445
    64 8rjc:o (2.90061) BS02 ZN ? GO:0003735 ... G1T040 38896445
    65 8rjc:p (2.90061) BS01 rna ? GO:0003735 ... G1SY53 38896445
    66 8rjc:p (2.90061) BS02 ZN ? GO:0003735 ... G1SY53 38896445
    67 8rjc:r (2.90061) BS01 rna ? GO:0003735 ... G1U7L1 38896445
    68 8rjc:w (2.90061) BS01 rna ? GO:0003723 ... G1TL06 38896445
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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