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BioLiP
Download all results in tab-seperated text for 23 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8ijn:A (1.8) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    2 8ijn:A (1.8) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    3 8ijn:A (1.8) BS03 NO 7.1.1.9 GO:0004129 ... P00396 20385840
    4 8ijn:A (1.8) BS04 CU 7.1.1.9 GO:0004129 ... P00396 20385840
    5 8ijn:A (1.8) BS05 MG 7.1.1.9 GO:0004129 ... P00396 20385840
    6 8ijn:B (1.8) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 20385840
    7 8ijn:B (1.8) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 20385840
    8 8ijn:C (1.8) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 20385840
    9 8ijn:F (1.8) BS01 ZN ? GO:0005740 ... P00428 20385840
    10 8ijn:M (1.8) BS01 DMU ? GO:0006123 ... P10175 20385840
    11 8ijn:N (1.8) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    12 8ijn:N (1.8) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    13 8ijn:N (1.8) BS03 NO 7.1.1.9 GO:0004129 ... P00396 20385840
    14 8ijn:N (1.8) BS04 CU 7.1.1.9 GO:0004129 ... P00396 20385840
    15 8ijn:N (1.8) BS05 MG 7.1.1.9 GO:0004129 ... P00396 20385840
    16 8ijn:O (1.8) BS01 CUA 7.1.1.9 GO:0004129 ... P68530 20385840
    17 8ijn:O (1.8) BS02 DMU 7.1.1.9 GO:0004129 ... P68530 20385840
    18 8ijn:P (1.8) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 20385840
    19 8ijn:P (1.8) BS02 DMU 7.1.1.9 GO:0004129 ... P00415 20385840
    20 8ijn:S (1.8) BS01 ZN ? GO:0005740 ... P00428 20385840
    21 8ijn:T (1.8) BS01 DMU ? GO:0005743 ... P07471 20385840
    22 8ijn:W (1.8) BS01 DMU ? GO:0006123 ... P07470 20385840
    23 8ijn:Z (1.8) BS01 DMU ? GO:0006123 ... P10175 20385840
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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