Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 131 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8gn0:A (2.15) BS01 OEX 1.10.3.9 GO:0005506 ... P51765 37209822
    2 8gn0:A (2.15) BS02 FE2 1.10.3.9 GO:0005506 ... P51765 37209822
    3 8gn0:A (2.15) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 37209822
    4 8gn0:A (2.15) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 37209822
    5 8gn0:A (2.15) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 37209822
    6 8gn0:A (2.15) BS06 PHO 1.10.3.9 GO:0005506 ... P51765 37209822
    7 8gn0:A (2.15) BS07 PHO 1.10.3.9 GO:0005506 ... P51765 37209822
    8 8gn0:A (2.15) BS08 CLA 1.10.3.9 GO:0005506 ... P51765 37209822
    9 8gn0:A (2.15) BS09 JOX 1.10.3.9 GO:0005506 ... P51765 37209822
    10 8gn0:A (2.15) BS10 JOX 1.10.3.9 GO:0005506 ... P51765 37209822
    11 8gn0:A (2.15) BS11 BCT 1.10.3.9 GO:0005506 ... P51765 37209822
    12 8gn0:A (2.15) BS12 CLA 1.10.3.9 GO:0005506 ... P51765 37209822
    13 8gn0:B (2.15) BS01 CLA ? GO:0009521 ... D0VWR1 37209822
    14 8gn0:B (2.15) BS02 CLA ? GO:0009521 ... D0VWR1 37209822
    15 8gn0:B (2.15) BS03 CLA ? GO:0009521 ... D0VWR1 37209822
    16 8gn0:B (2.15) BS04 CLA ? GO:0009521 ... D0VWR1 37209822
    17 8gn0:B (2.15) BS05 CLA ? GO:0009521 ... D0VWR1 37209822
    18 8gn0:B (2.15) BS06 CLA ? GO:0009521 ... D0VWR1 37209822
    19 8gn0:B (2.15) BS07 CLA ? GO:0009521 ... D0VWR1 37209822
    20 8gn0:B (2.15) BS08 CLA ? GO:0009521 ... D0VWR1 37209822
    21 8gn0:B (2.15) BS09 CLA ? GO:0009521 ... D0VWR1 37209822
    22 8gn0:B (2.15) BS10 CLA ? GO:0009521 ... D0VWR1 37209822
    23 8gn0:B (2.15) BS11 CLA ? GO:0009521 ... D0VWR1 37209822
    24 8gn0:B (2.15) BS12 CLA ? GO:0009521 ... D0VWR1 37209822
    25 8gn0:B (2.15) BS13 CLA ? GO:0009521 ... D0VWR1 37209822
    26 8gn0:B (2.15) BS14 CLA ? GO:0009521 ... D0VWR1 37209822
    27 8gn0:B (2.15) BS15 CLA ? GO:0009521 ... D0VWR1 37209822
    28 8gn0:B (2.15) BS16 CLA ? GO:0009521 ... D0VWR1 37209822
    29 8gn0:C (2.15) BS01 OEX ? GO:0005737 ... D0VWR7 37209822
    30 8gn0:C (2.15) BS02 CLA ? GO:0005737 ... D0VWR7 37209822
    31 8gn0:C (2.15) BS03 CLA ? GO:0005737 ... D0VWR7 37209822
    32 8gn0:C (2.15) BS04 CLA ? GO:0005737 ... D0VWR7 37209822
    33 8gn0:C (2.15) BS05 CLA ? GO:0005737 ... D0VWR7 37209822
    34 8gn0:C (2.15) BS06 CLA ? GO:0005737 ... D0VWR7 37209822
    35 8gn0:C (2.15) BS07 CLA ? GO:0005737 ... D0VWR7 37209822
    36 8gn0:C (2.15) BS08 CLA ? GO:0005737 ... D0VWR7 37209822
    37 8gn0:C (2.15) BS09 CLA ? GO:0005737 ... D0VWR7 37209822
    38 8gn0:C (2.15) BS10 CLA ? GO:0005737 ... D0VWR7 37209822
    39 8gn0:C (2.15) BS11 CLA ? GO:0005737 ... D0VWR7 37209822
    40 8gn0:C (2.15) BS12 CLA ? GO:0005737 ... D0VWR7 37209822
    41 8gn0:C (2.15) BS13 CLA ? GO:0005737 ... D0VWR7 37209822
    42 8gn0:C (2.15) BS14 CLA ? GO:0005737 ... D0VWR7 37209822
    43 8gn0:D (2.15) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    44 8gn0:D (2.15) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    45 8gn0:D (2.15) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    46 8gn0:D (2.15) BS04 PHO 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    47 8gn0:D (2.15) BS05 PHO 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    48 8gn0:D (2.15) BS06 BCT 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    49 8gn0:D (2.15) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    50 8gn0:D (2.15) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    51 8gn0:D (2.15) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    52 8gn0:E (2.15) BS01 HEM ? GO:0005506 ... P12238 37209822
    53 8gn0:F (2.15) BS01 HEM ? GO:0005506 ... P12239 37209822
    54 8gn0:H (2.15) BS01 CLA ? GO:0009523 ... P19052 37209822
    55 8gn0:H (2.15) BS02 CLA ? GO:0009523 ... P19052 37209822
    56 8gn0:H (2.15) BS03 CLA ? GO:0009523 ... P19052 37209822
    57 8gn0:H (2.15) BS04 RRX ? GO:0009523 ... P19052 37209822
    58 8gn0:I (2.15) BS01 CLA ? GO:0005737 ... P12240 37209822
    59 8gn0:J (2.15) BS01 MG ? GO:0009523 ... Q7DGD4 37209822
    60 8gn0:K (2.15) BS01 CLA ? GO:0005737 ... P19054 37209822
    61 8gn0:K (2.15) BS02 CLA ? GO:0005737 ... P19054 37209822
    62 8gn0:O (2.15) BS01 CA ? GO:0009523 ... D0VWR2 37209822
    63 8gn0:V (2.15) BS01 HEC ? GO:0005506 ... P0A387 37209822
    64 8gn0:Y (2.15) BS01 CLA ? GO:0009523 ... D0VWR3 37209822
    65 8gn0:Z (2.15) BS01 CLA ? GO:0009523 ... D0VWR5 37209822
    66 8gn0:a (2.15) BS01 OEX 1.10.3.9 GO:0005506 ... P51765 37209822
    67 8gn0:a (2.15) BS02 FE2 1.10.3.9 GO:0005506 ... P51765 37209822
    68 8gn0:a (2.15) BS03 BCT 1.10.3.9 GO:0005506 ... P51765 37209822
    69 8gn0:a (2.15) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 37209822
    70 8gn0:a (2.15) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 37209822
    71 8gn0:a (2.15) BS06 PHO 1.10.3.9 GO:0005506 ... P51765 37209822
    72 8gn0:a (2.15) BS07 PHO 1.10.3.9 GO:0005506 ... P51765 37209822
    73 8gn0:a (2.15) BS08 CLA 1.10.3.9 GO:0005506 ... P51765 37209822
    74 8gn0:a (2.15) BS09 JOX 1.10.3.9 GO:0005506 ... P51765 37209822
    75 8gn0:a (2.15) BS10 JOX 1.10.3.9 GO:0005506 ... P51765 37209822
    76 8gn0:a (2.15) BS11 CLA 1.10.3.9 GO:0005506 ... P51765 37209822
    77 8gn0:b (2.15) BS01 CLA ? GO:0009521 ... D0VWR1 37209822
    78 8gn0:b (2.15) BS02 CLA ? GO:0009521 ... D0VWR1 37209822
    79 8gn0:b (2.15) BS03 CLA ? GO:0009521 ... D0VWR1 37209822
    80 8gn0:b (2.15) BS04 CLA ? GO:0009521 ... D0VWR1 37209822
    81 8gn0:b (2.15) BS05 CLA ? GO:0009521 ... D0VWR1 37209822
    82 8gn0:b (2.15) BS06 CLA ? GO:0009521 ... D0VWR1 37209822
    83 8gn0:b (2.15) BS07 CLA ? GO:0009521 ... D0VWR1 37209822
    84 8gn0:b (2.15) BS08 CLA ? GO:0009521 ... D0VWR1 37209822
    85 8gn0:b (2.15) BS09 CLA ? GO:0009521 ... D0VWR1 37209822
    86 8gn0:b (2.15) BS10 CLA ? GO:0009521 ... D0VWR1 37209822
    87 8gn0:b (2.15) BS11 CLA ? GO:0009521 ... D0VWR1 37209822
    88 8gn0:b (2.15) BS12 CLA ? GO:0009521 ... D0VWR1 37209822
    89 8gn0:b (2.15) BS13 CLA ? GO:0009521 ... D0VWR1 37209822
    90 8gn0:b (2.15) BS14 CLA ? GO:0009521 ... D0VWR1 37209822
    91 8gn0:b (2.15) BS15 CLA ? GO:0009521 ... D0VWR1 37209822
    92 8gn0:b (2.15) BS16 CLA ? GO:0009521 ... D0VWR1 37209822
    93 8gn0:c (2.15) BS01 OEX ? GO:0005737 ... D0VWR7 37209822
    94 8gn0:c (2.15) BS02 CA ? GO:0005737 ... D0VWR7 37209822
    95 8gn0:c (2.15) BS03 CLA ? GO:0005737 ... D0VWR7 37209822
    96 8gn0:c (2.15) BS04 CLA ? GO:0005737 ... D0VWR7 37209822
    97 8gn0:c (2.15) BS05 CLA ? GO:0005737 ... D0VWR7 37209822
    98 8gn0:c (2.15) BS06 CLA ? GO:0005737 ... D0VWR7 37209822
    99 8gn0:c (2.15) BS07 CLA ? GO:0005737 ... D0VWR7 37209822
    100 8gn0:c (2.15) BS08 CLA ? GO:0005737 ... D0VWR7 37209822
    101 8gn0:c (2.15) BS09 CLA ? GO:0005737 ... D0VWR7 37209822
    102 8gn0:c (2.15) BS10 CLA ? GO:0005737 ... D0VWR7 37209822
    103 8gn0:c (2.15) BS11 CLA ? GO:0005737 ... D0VWR7 37209822
    104 8gn0:c (2.15) BS12 CLA ? GO:0005737 ... D0VWR7 37209822
    105 8gn0:c (2.15) BS13 CLA ? GO:0005737 ... D0VWR7 37209822
    106 8gn0:c (2.15) BS14 CLA ? GO:0005737 ... D0VWR7 37209822
    107 8gn0:c (2.15) BS15 CLA ? GO:0005737 ... D0VWR7 37209822
    108 8gn0:d (2.15) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    109 8gn0:d (2.15) BS02 BCT 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    110 8gn0:d (2.15) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    111 8gn0:d (2.15) BS04 PHO 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    112 8gn0:d (2.15) BS05 PHO 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    113 8gn0:d (2.15) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    114 8gn0:d (2.15) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    115 8gn0:d (2.15) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    116 8gn0:d (2.15) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    117 8gn0:e (2.15) BS01 HEM ? GO:0005506 ... P12238 37209822
    118 8gn0:f (2.15) BS01 HEM ? GO:0005506 ... P12239 37209822
    119 8gn0:h (2.15) BS01 CLA ? GO:0009523 ... P19052 37209822
    120 8gn0:h (2.15) BS02 CLA ? GO:0009523 ... P19052 37209822
    121 8gn0:h (2.15) BS03 CLA ? GO:0009523 ... P19052 37209822
    122 8gn0:h (2.15) BS04 CLA ? GO:0009523 ... P19052 37209822
    123 8gn0:h (2.15) BS05 CLA ? GO:0009523 ... P19052 37209822
    124 8gn0:h (2.15) BS06 RRX ? GO:0009523 ... P19052 37209822
    125 8gn0:i (2.15) BS01 CLA ? GO:0005737 ... P12240 37209822
    126 8gn0:j (2.15) BS01 MG ? GO:0009523 ... Q7DGD4 37209822
    127 8gn0:k (2.15) BS01 CLA ? GO:0005737 ... P19054 37209822
    128 8gn0:k (2.15) BS02 CLA ? GO:0005737 ... P19054 37209822
    129 8gn0:o (2.15) BS01 CA ? GO:0009523 ... D0VWR2 37209822
    130 8gn0:v (2.15) BS01 HEC ? GO:0005506 ... P0A387 37209822
    131 8gn0:x (2.15) BS01 CLA ? GO:0009523 ... D0VWR4 37209822
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218