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BioLiP
Download all results in tab-seperated text for 119 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8f4h:A (2.1) BS01 OEY 1.10.3.9 GO:0005506 ... P0A444 37138085
    2 8f4h:A (2.1) BS02 OEX 1.10.3.9 GO:0005506 ... P0A444 37138085
    3 8f4h:A (2.1) BS03 FE2 1.10.3.9 GO:0005506 ... P0A444 37138085
    4 8f4h:A (2.1) BS04 BCT 1.10.3.9 GO:0005506 ... P0A444 37138085
    5 8f4h:A (2.1) BS05 CLA 1.10.3.9 GO:0005506 ... P0A444 37138085
    6 8f4h:A (2.1) BS06 CLA 1.10.3.9 GO:0005506 ... P0A444 37138085
    7 8f4h:A (2.1) BS07 PHO 1.10.3.9 GO:0005506 ... P0A444 37138085
    8 8f4h:A (2.1) BS08 CLA 1.10.3.9 GO:0005506 ... P0A444 37138085
    9 8f4h:A (2.1) BS09 CLA 1.10.3.9 GO:0005506 ... P0A444 37138085
    10 8f4h:A (2.1) BS10 PHO 1.10.3.9 GO:0005506 ... P0A444 37138085
    11 8f4h:B (2.1) BS01 CLA ? GO:0009521 ... Q8DIQ1 37138085
    12 8f4h:B (2.1) BS02 CLA ? GO:0009521 ... Q8DIQ1 37138085
    13 8f4h:B (2.1) BS03 CLA ? GO:0009521 ... Q8DIQ1 37138085
    14 8f4h:B (2.1) BS04 CLA ? GO:0009521 ... Q8DIQ1 37138085
    15 8f4h:B (2.1) BS05 CLA ? GO:0009521 ... Q8DIQ1 37138085
    16 8f4h:B (2.1) BS06 CLA ? GO:0009521 ... Q8DIQ1 37138085
    17 8f4h:B (2.1) BS07 CLA ? GO:0009521 ... Q8DIQ1 37138085
    18 8f4h:B (2.1) BS08 CLA ? GO:0009521 ... Q8DIQ1 37138085
    19 8f4h:B (2.1) BS09 CLA ? GO:0009521 ... Q8DIQ1 37138085
    20 8f4h:B (2.1) BS10 CLA ? GO:0009521 ... Q8DIQ1 37138085
    21 8f4h:B (2.1) BS11 CLA ? GO:0009521 ... Q8DIQ1 37138085
    22 8f4h:B (2.1) BS12 CLA ? GO:0009521 ... Q8DIQ1 37138085
    23 8f4h:B (2.1) BS13 CLA ? GO:0009521 ... Q8DIQ1 37138085
    24 8f4h:B (2.1) BS14 CLA ? GO:0009521 ... Q8DIQ1 37138085
    25 8f4h:B (2.1) BS15 CLA ? GO:0009521 ... Q8DIQ1 37138085
    26 8f4h:B (2.1) BS16 CLA ? GO:0009521 ... Q8DIQ1 37138085
    27 8f4h:C (2.1) BS01 OEY ? GO:0005737 ... Q8DIF8 37138085
    28 8f4h:C (2.1) BS02 OEX ? GO:0005737 ... Q8DIF8 37138085
    29 8f4h:C (2.1) BS03 CLA ? GO:0005737 ... Q8DIF8 37138085
    30 8f4h:C (2.1) BS04 CLA ? GO:0005737 ... Q8DIF8 37138085
    31 8f4h:C (2.1) BS05 CLA ? GO:0005737 ... Q8DIF8 37138085
    32 8f4h:C (2.1) BS06 CLA ? GO:0005737 ... Q8DIF8 37138085
    33 8f4h:C (2.1) BS07 CLA ? GO:0005737 ... Q8DIF8 37138085
    34 8f4h:C (2.1) BS08 CLA ? GO:0005737 ... Q8DIF8 37138085
    35 8f4h:C (2.1) BS09 CLA ? GO:0005737 ... Q8DIF8 37138085
    36 8f4h:C (2.1) BS10 CLA ? GO:0005737 ... Q8DIF8 37138085
    37 8f4h:C (2.1) BS11 CLA ? GO:0005737 ... Q8DIF8 37138085
    38 8f4h:C (2.1) BS12 CLA ? GO:0005737 ... Q8DIF8 37138085
    39 8f4h:C (2.1) BS13 CLA ? GO:0005737 ... Q8DIF8 37138085
    40 8f4h:C (2.1) BS14 CLA ? GO:0005737 ... Q8DIF8 37138085
    41 8f4h:C (2.1) BS15 CLA ? GO:0005737 ... Q8DIF8 37138085
    42 8f4h:D (2.1) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 37138085
    43 8f4h:D (2.1) BS02 BCT 1.10.3.9 GO:0005506 ... Q8CM25 37138085
    44 8f4h:D (2.1) BS03 CLA 1.10.3.9 GO:0005506 ... Q8CM25 37138085
    45 8f4h:D (2.1) BS04 PHO 1.10.3.9 GO:0005506 ... Q8CM25 37138085
    46 8f4h:D (2.1) BS05 CLA 1.10.3.9 GO:0005506 ... Q8CM25 37138085
    47 8f4h:D (2.1) BS06 CLA 1.10.3.9 GO:0005506 ... Q8CM25 37138085
    48 8f4h:D (2.1) BS07 PHO 1.10.3.9 GO:0005506 ... Q8CM25 37138085
    49 8f4h:D (2.1) BS08 CLA 1.10.3.9 GO:0005506 ... Q8CM25 37138085
    50 8f4h:D (2.1) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 37138085
    51 8f4h:E (2.1) BS01 HEM ? GO:0005506 ... Q8DIP0 37138085
    52 8f4h:F (2.1) BS01 HEM ? GO:0005506 ... Q8DIN9 37138085
    53 8f4h:H (2.1) BS01 CLA ? GO:0009523 ... Q8DJ43 37138085
    54 8f4h:H (2.1) BS02 CLA ? GO:0009523 ... Q8DJ43 37138085
    55 8f4h:H (2.1) BS03 CLA ? GO:0009523 ... Q8DJ43 37138085
    56 8f4h:I (2.1) BS01 CLA ? GO:0005737 ... Q8DJZ6 37138085
    57 8f4h:K (2.1) BS01 peptide ? GO:0005737 ... Q9F1K9 37138085
    58 8f4h:K (2.1) BS02 CLA ? GO:0005737 ... Q9F1K9 37138085
    59 8f4h:V (2.1) BS01 HEC ? GO:0005506 ... P0A386 37138085
    60 8f4h:X (2.1) BS01 CLA ? GO:0009523 ... Q9F1R6 37138085
    61 8f4h:Z (2.1) BS01 peptide ? GO:0009523 ... Q8DHJ2 37138085
    62 8f4h:a (2.1) BS01 OEY 1.10.3.9 GO:0005506 ... P0A444 37138085
    63 8f4h:a (2.1) BS02 OEX 1.10.3.9 GO:0005506 ... P0A444 37138085
    64 8f4h:a (2.1) BS03 FE2 1.10.3.9 GO:0005506 ... P0A444 37138085
    65 8f4h:a (2.1) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 37138085
    66 8f4h:a (2.1) BS05 CLA 1.10.3.9 GO:0005506 ... P0A444 37138085
    67 8f4h:a (2.1) BS06 PHO 1.10.3.9 GO:0005506 ... P0A444 37138085
    68 8f4h:a (2.1) BS07 CLA 1.10.3.9 GO:0005506 ... P0A444 37138085
    69 8f4h:a (2.1) BS08 CLA 1.10.3.9 GO:0005506 ... P0A444 37138085
    70 8f4h:a (2.1) BS09 CLA 1.10.3.9 GO:0005506 ... P0A444 37138085
    71 8f4h:a (2.1) BS10 BCT 1.10.3.9 GO:0005506 ... P0A444 37138085
    72 8f4h:a (2.1) BS11 PHO 1.10.3.9 GO:0005506 ... P0A444 37138085
    73 8f4h:b (2.1) BS01 CLA ? GO:0009521 ... Q8DIQ1 37138085
    74 8f4h:b (2.1) BS02 CLA ? GO:0009521 ... Q8DIQ1 37138085
    75 8f4h:b (2.1) BS03 CLA ? GO:0009521 ... Q8DIQ1 37138085
    76 8f4h:b (2.1) BS04 CLA ? GO:0009521 ... Q8DIQ1 37138085
    77 8f4h:b (2.1) BS05 CLA ? GO:0009521 ... Q8DIQ1 37138085
    78 8f4h:b (2.1) BS06 CLA ? GO:0009521 ... Q8DIQ1 37138085
    79 8f4h:b (2.1) BS07 CLA ? GO:0009521 ... Q8DIQ1 37138085
    80 8f4h:b (2.1) BS08 CLA ? GO:0009521 ... Q8DIQ1 37138085
    81 8f4h:b (2.1) BS09 CLA ? GO:0009521 ... Q8DIQ1 37138085
    82 8f4h:b (2.1) BS10 CLA ? GO:0009521 ... Q8DIQ1 37138085
    83 8f4h:b (2.1) BS11 CLA ? GO:0009521 ... Q8DIQ1 37138085
    84 8f4h:b (2.1) BS12 CLA ? GO:0009521 ... Q8DIQ1 37138085
    85 8f4h:b (2.1) BS13 CLA ? GO:0009521 ... Q8DIQ1 37138085
    86 8f4h:b (2.1) BS14 CLA ? GO:0009521 ... Q8DIQ1 37138085
    87 8f4h:b (2.1) BS15 CLA ? GO:0009521 ... Q8DIQ1 37138085
    88 8f4h:b (2.1) BS16 CLA ? GO:0009521 ... Q8DIQ1 37138085
    89 8f4h:c (2.1) BS01 OEY ? GO:0005737 ... Q8DIF8 37138085
    90 8f4h:c (2.1) BS02 OEX ? GO:0005737 ... Q8DIF8 37138085
    91 8f4h:c (2.1) BS03 CLA ? GO:0005737 ... Q8DIF8 37138085
    92 8f4h:c (2.1) BS04 CLA ? GO:0005737 ... Q8DIF8 37138085
    93 8f4h:c (2.1) BS05 CLA ? GO:0005737 ... Q8DIF8 37138085
    94 8f4h:c (2.1) BS06 CLA ? GO:0005737 ... Q8DIF8 37138085
    95 8f4h:c (2.1) BS07 CLA ? GO:0005737 ... Q8DIF8 37138085
    96 8f4h:c (2.1) BS08 CLA ? GO:0005737 ... Q8DIF8 37138085
    97 8f4h:c (2.1) BS09 CLA ? GO:0005737 ... Q8DIF8 37138085
    98 8f4h:c (2.1) BS10 CLA ? GO:0005737 ... Q8DIF8 37138085
    99 8f4h:c (2.1) BS11 CLA ? GO:0005737 ... Q8DIF8 37138085
    100 8f4h:c (2.1) BS12 CLA ? GO:0005737 ... Q8DIF8 37138085
    101 8f4h:c (2.1) BS13 CLA ? GO:0005737 ... Q8DIF8 37138085
    102 8f4h:c (2.1) BS14 CLA ? GO:0005737 ... Q8DIF8 37138085
    103 8f4h:c (2.1) BS15 CLA ? GO:0005737 ... Q8DIF8 37138085
    104 8f4h:d (2.1) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 37138085
    105 8f4h:d (2.1) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 37138085
    106 8f4h:d (2.1) BS03 PHO 1.10.3.9 GO:0005506 ... Q8CM25 37138085
    107 8f4h:d (2.1) BS04 CLA 1.10.3.9 GO:0005506 ... Q8CM25 37138085
    108 8f4h:d (2.1) BS05 CLA 1.10.3.9 GO:0005506 ... Q8CM25 37138085
    109 8f4h:d (2.1) BS06 BCT 1.10.3.9 GO:0005506 ... Q8CM25 37138085
    110 8f4h:d (2.1) BS07 PHO 1.10.3.9 GO:0005506 ... Q8CM25 37138085
    111 8f4h:d (2.1) BS08 CLA 1.10.3.9 GO:0005506 ... Q8CM25 37138085
    112 8f4h:d (2.1) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 37138085
    113 8f4h:e (2.1) BS01 HEM ? GO:0005506 ... Q8DIP0 37138085
    114 8f4h:f (2.1) BS01 HEM ? GO:0005506 ... Q8DIN9 37138085
    115 8f4h:h (2.1) BS01 CLA ? GO:0009523 ... Q8DJ43 37138085
    116 8f4h:h (2.1) BS02 CLA ? GO:0009523 ... Q8DJ43 37138085
    117 8f4h:i (2.1) BS01 CLA ? GO:0005737 ... Q8DJZ6 37138085
    118 8f4h:k (2.1) BS01 CLA ? GO:0005737 ... Q9F1K9 37138085
    119 8f4h:v (2.1) BS01 HEC ? GO:0005506 ... P0A386 37138085
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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