Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 120 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8eqm:A (2.6) BS01 OEX ? GO:0009055 ... B4WKH9 36549647
    2 8eqm:A (2.6) BS02 FE2 ? GO:0009055 ... B4WKH9 36549647
    3 8eqm:A (2.6) BS03 CLA ? GO:0009055 ... B4WKH9 36549647
    4 8eqm:A (2.6) BS04 CLA ? GO:0009055 ... B4WKH9 36549647
    5 8eqm:A (2.6) BS05 PHO ? GO:0009055 ... B4WKH9 36549647
    6 8eqm:A (2.6) BS06 CLA ? GO:0009055 ... B4WKH9 36549647
    7 8eqm:A (2.6) BS07 BCT ? GO:0009055 ... B4WKH9 36549647
    8 8eqm:A (2.6) BS08 CLA ? GO:0009055 ... B4WKH9 36549647
    9 8eqm:A (2.6) BS09 CL7 ? GO:0009055 ... B4WKH9 36549647
    10 8eqm:A (2.6) BS10 PHO ? GO:0009055 ... B4WKH9 36549647
    11 8eqm:B (2.6) BS01 CLA ? GO:0009521 ... B4WKI1 36549647
    12 8eqm:B (2.6) BS02 CLA ? GO:0009521 ... B4WKI1 36549647
    13 8eqm:B (2.6) BS03 CLA ? GO:0009521 ... B4WKI1 36549647
    14 8eqm:B (2.6) BS04 F6C ? GO:0009521 ... B4WKI1 36549647
    15 8eqm:B (2.6) BS05 CLA ? GO:0009521 ... B4WKI1 36549647
    16 8eqm:B (2.6) BS06 CLA ? GO:0009521 ... B4WKI1 36549647
    17 8eqm:B (2.6) BS07 F6C ? GO:0009521 ... B4WKI1 36549647
    18 8eqm:B (2.6) BS08 CLA ? GO:0009521 ... B4WKI1 36549647
    19 8eqm:B (2.6) BS09 CLA ? GO:0009521 ... B4WKI1 36549647
    20 8eqm:B (2.6) BS10 CLA ? GO:0009521 ... B4WKI1 36549647
    21 8eqm:B (2.6) BS11 CLA ? GO:0009521 ... B4WKI1 36549647
    22 8eqm:B (2.6) BS12 CLA ? GO:0009521 ... B4WKI1 36549647
    23 8eqm:B (2.6) BS13 F6C ? GO:0009521 ... B4WKI1 36549647
    24 8eqm:B (2.6) BS14 CLA ? GO:0009521 ... B4WKI1 36549647
    25 8eqm:B (2.6) BS15 CLA ? GO:0009521 ... B4WKI1 36549647
    26 8eqm:B (2.6) BS16 CLA ? GO:0009521 ... B4WKI1 36549647
    27 8eqm:C (2.6) BS01 CLA ? GO:0005737 ... B4WKI2 36549647
    28 8eqm:C (2.6) BS02 CLA ? GO:0005737 ... B4WKI2 36549647
    29 8eqm:C (2.6) BS03 CLA ? GO:0005737 ... B4WKI2 36549647
    30 8eqm:C (2.6) BS04 CLA ? GO:0005737 ... B4WKI2 36549647
    31 8eqm:C (2.6) BS05 CLA ? GO:0005737 ... B4WKI2 36549647
    32 8eqm:C (2.6) BS06 CLA ? GO:0005737 ... B4WKI2 36549647
    33 8eqm:C (2.6) BS07 F6C ? GO:0005737 ... B4WKI2 36549647
    34 8eqm:C (2.6) BS08 CLA ? GO:0005737 ... B4WKI2 36549647
    35 8eqm:C (2.6) BS09 CLA ? GO:0005737 ... B4WKI2 36549647
    36 8eqm:C (2.6) BS10 CLA ? GO:0005737 ... B4WKI2 36549647
    37 8eqm:C (2.6) BS11 CLA ? GO:0005737 ... B4WKI2 36549647
    38 8eqm:C (2.6) BS12 CLA ? GO:0005737 ... B4WKI2 36549647
    39 8eqm:C (2.6) BS13 CLA ? GO:0005737 ... B4WKI2 36549647
    40 8eqm:D (2.6) BS01 FE2 1.10.3.9 GO:0005506 ... B4WKI3 36549647
    41 8eqm:D (2.6) BS02 CLA 1.10.3.9 GO:0005506 ... B4WKI3 36549647
    42 8eqm:D (2.6) BS03 PHO 1.10.3.9 GO:0005506 ... B4WKI3 36549647
    43 8eqm:D (2.6) BS04 BCT 1.10.3.9 GO:0005506 ... B4WKI3 36549647
    44 8eqm:D (2.6) BS05 CLA 1.10.3.9 GO:0005506 ... B4WKI3 36549647
    45 8eqm:D (2.6) BS06 CL7 1.10.3.9 GO:0005506 ... B4WKI3 36549647
    46 8eqm:D (2.6) BS07 PHO 1.10.3.9 GO:0005506 ... B4WKI3 36549647
    47 8eqm:D (2.6) BS08 CLA 1.10.3.9 GO:0005506 ... B4WKI3 36549647
    48 8eqm:D (2.6) BS09 CLA 1.10.3.9 GO:0005506 ... B4WKI3 36549647
    49 8eqm:E (2.6) BS01 HEM ? GO:0005506 ... B4WII1 36549647
    50 8eqm:F (2.6) BS01 HEM ? GO:0005506 ... B4WKJ2 36549647
    51 8eqm:H (2.6) BS01 CLA ? GO:0009523 ... B4WKI0 36549647
    52 8eqm:H (2.6) BS02 CLA ? GO:0009523 ... B4WKI0 36549647
    53 8eqm:H (2.6) BS03 CLA ? GO:0009523 ... B4WKI0 36549647
    54 8eqm:H (2.6) BS04 CLA ? GO:0009523 ... B4WKI0 36549647
    55 8eqm:H (2.6) BS05 RRX ? GO:0009523 ... B4WKI0 36549647
    56 8eqm:I (2.6) BS01 CLA ? GO:0005737 ... B4WM03 36549647
    57 8eqm:I (2.6) BS02 CLA ? GO:0005737 ... B4WM03 36549647
    58 8eqm:K (2.6) BS01 CLA ? GO:0005737 ... B4WR12 36549647
    59 8eqm:K (2.6) BS02 CLA ? GO:0005737 ... B4WR12 36549647
    60 8eqm:V (2.6) BS01 HEM ? GO:0005506 ... B4WI32 36549647
    61 8eqm:a (2.6) BS01 OEX ? GO:0009055 ... B4WKH9 36549647
    62 8eqm:a (2.6) BS02 FE2 ? GO:0009055 ... B4WKH9 36549647
    63 8eqm:a (2.6) BS03 CLA ? GO:0009055 ... B4WKH9 36549647
    64 8eqm:a (2.6) BS04 CLA ? GO:0009055 ... B4WKH9 36549647
    65 8eqm:a (2.6) BS05 PHO ? GO:0009055 ... B4WKH9 36549647
    66 8eqm:a (2.6) BS06 CLA ? GO:0009055 ... B4WKH9 36549647
    67 8eqm:a (2.6) BS07 BCT ? GO:0009055 ... B4WKH9 36549647
    68 8eqm:a (2.6) BS08 CLA ? GO:0009055 ... B4WKH9 36549647
    69 8eqm:a (2.6) BS09 CL7 ? GO:0009055 ... B4WKH9 36549647
    70 8eqm:a (2.6) BS10 PHO ? GO:0009055 ... B4WKH9 36549647
    71 8eqm:b (2.6) BS01 CLA ? GO:0009521 ... B4WKI1 36549647
    72 8eqm:b (2.6) BS02 CLA ? GO:0009521 ... B4WKI1 36549647
    73 8eqm:b (2.6) BS03 CLA ? GO:0009521 ... B4WKI1 36549647
    74 8eqm:b (2.6) BS04 F6C ? GO:0009521 ... B4WKI1 36549647
    75 8eqm:b (2.6) BS05 CLA ? GO:0009521 ... B4WKI1 36549647
    76 8eqm:b (2.6) BS06 CLA ? GO:0009521 ... B4WKI1 36549647
    77 8eqm:b (2.6) BS07 F6C ? GO:0009521 ... B4WKI1 36549647
    78 8eqm:b (2.6) BS08 CLA ? GO:0009521 ... B4WKI1 36549647
    79 8eqm:b (2.6) BS09 CLA ? GO:0009521 ... B4WKI1 36549647
    80 8eqm:b (2.6) BS10 CLA ? GO:0009521 ... B4WKI1 36549647
    81 8eqm:b (2.6) BS11 CLA ? GO:0009521 ... B4WKI1 36549647
    82 8eqm:b (2.6) BS12 CLA ? GO:0009521 ... B4WKI1 36549647
    83 8eqm:b (2.6) BS13 F6C ? GO:0009521 ... B4WKI1 36549647
    84 8eqm:b (2.6) BS14 CLA ? GO:0009521 ... B4WKI1 36549647
    85 8eqm:b (2.6) BS15 CLA ? GO:0009521 ... B4WKI1 36549647
    86 8eqm:b (2.6) BS16 CLA ? GO:0009521 ... B4WKI1 36549647
    87 8eqm:c (2.6) BS01 CLA ? GO:0005737 ... B4WKI2 36549647
    88 8eqm:c (2.6) BS02 CLA ? GO:0005737 ... B4WKI2 36549647
    89 8eqm:c (2.6) BS03 CLA ? GO:0005737 ... B4WKI2 36549647
    90 8eqm:c (2.6) BS04 CLA ? GO:0005737 ... B4WKI2 36549647
    91 8eqm:c (2.6) BS05 CLA ? GO:0005737 ... B4WKI2 36549647
    92 8eqm:c (2.6) BS06 CLA ? GO:0005737 ... B4WKI2 36549647
    93 8eqm:c (2.6) BS07 F6C ? GO:0005737 ... B4WKI2 36549647
    94 8eqm:c (2.6) BS08 CLA ? GO:0005737 ... B4WKI2 36549647
    95 8eqm:c (2.6) BS09 CLA ? GO:0005737 ... B4WKI2 36549647
    96 8eqm:c (2.6) BS10 CLA ? GO:0005737 ... B4WKI2 36549647
    97 8eqm:c (2.6) BS11 CLA ? GO:0005737 ... B4WKI2 36549647
    98 8eqm:c (2.6) BS12 CLA ? GO:0005737 ... B4WKI2 36549647
    99 8eqm:c (2.6) BS13 CLA ? GO:0005737 ... B4WKI2 36549647
    100 8eqm:d (2.6) BS01 FE2 1.10.3.9 GO:0005506 ... B4WKI3 36549647
    101 8eqm:d (2.6) BS02 CLA 1.10.3.9 GO:0005506 ... B4WKI3 36549647
    102 8eqm:d (2.6) BS03 PHO 1.10.3.9 GO:0005506 ... B4WKI3 36549647
    103 8eqm:d (2.6) BS04 BCT 1.10.3.9 GO:0005506 ... B4WKI3 36549647
    104 8eqm:d (2.6) BS05 CLA 1.10.3.9 GO:0005506 ... B4WKI3 36549647
    105 8eqm:d (2.6) BS06 CL7 1.10.3.9 GO:0005506 ... B4WKI3 36549647
    106 8eqm:d (2.6) BS07 PHO 1.10.3.9 GO:0005506 ... B4WKI3 36549647
    107 8eqm:d (2.6) BS08 CLA 1.10.3.9 GO:0005506 ... B4WKI3 36549647
    108 8eqm:d (2.6) BS09 CLA 1.10.3.9 GO:0005506 ... B4WKI3 36549647
    109 8eqm:e (2.6) BS01 HEM ? GO:0005506 ... B4WII1 36549647
    110 8eqm:f (2.6) BS01 HEM ? GO:0005506 ... B4WKJ2 36549647
    111 8eqm:h (2.6) BS01 CLA ? GO:0009523 ... B4WKI0 36549647
    112 8eqm:h (2.6) BS02 CLA ? GO:0009523 ... B4WKI0 36549647
    113 8eqm:h (2.6) BS03 CLA ? GO:0009523 ... B4WKI0 36549647
    114 8eqm:h (2.6) BS04 CLA ? GO:0009523 ... B4WKI0 36549647
    115 8eqm:h (2.6) BS05 RRX ? GO:0009523 ... B4WKI0 36549647
    116 8eqm:i (2.6) BS01 CLA ? GO:0005737 ... B4WM03 36549647
    117 8eqm:i (2.6) BS02 CLA ? GO:0005737 ... B4WM03 36549647
    118 8eqm:k (2.6) BS01 CLA ? GO:0005737 ... B4WR12 36549647
    119 8eqm:k (2.6) BS02 CLA ? GO:0005737 ... B4WR12 36549647
    120 8eqm:v (2.6) BS01 HEM ? GO:0005506 ... B4WI32 36549647
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417