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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 509 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8bd3:0 (2.73) BS01 CHL N/A GO:0009765 ... N/A 37566050
    2 8bd3:0 (2.73) BS02 CLA N/A GO:0009765 ... N/A 37566050
    3 8bd3:0 (2.73) BS03 CLA N/A GO:0009765 ... N/A 37566050
    4 8bd3:0 (2.73) BS04 CLA N/A GO:0009765 ... N/A 37566050
    5 8bd3:0 (2.73) BS05 CHL N/A GO:0009765 ... N/A 37566050
    6 8bd3:0 (2.73) BS06 CHL N/A GO:0009765 ... N/A 37566050
    7 8bd3:0 (2.73) BS07 CHL N/A GO:0009765 ... N/A 37566050
    8 8bd3:0 (2.73) BS08 CHL N/A GO:0009765 ... N/A 37566050
    9 8bd3:0 (2.73) BS09 CHL N/A GO:0009765 ... N/A 37566050
    10 8bd3:0 (2.73) BS10 CLA N/A GO:0009765 ... N/A 37566050
    11 8bd3:0 (2.73) BS11 CLA N/A GO:0009765 ... N/A 37566050
    12 8bd3:0 (2.73) BS12 CLA N/A GO:0009765 ... N/A 37566050
    13 8bd3:0 (2.73) BS13 CLA N/A GO:0009765 ... N/A 37566050
    14 8bd3:0 (2.73) BS14 CLA N/A GO:0009765 ... N/A 37566050
    15 8bd3:0 (2.73) BS15 CLA N/A GO:0009765 ... N/A 37566050
    16 8bd3:0 (2.73) BS16 CHL N/A GO:0009765 ... N/A 37566050
    17 8bd3:0 (2.73) BS17 CLA N/A GO:0009765 ... N/A 37566050
    18 8bd3:1 (2.73) BS01 CHL ? GO:0009765 ... A0A2P6TPU9 37566050
    19 8bd3:1 (2.73) BS02 CLA ? GO:0009765 ... A0A2P6TPU9 37566050
    20 8bd3:1 (2.73) BS03 CLA ? GO:0009765 ... A0A2P6TPU9 37566050
    21 8bd3:1 (2.73) BS04 CLA ? GO:0009765 ... A0A2P6TPU9 37566050
    22 8bd3:1 (2.73) BS05 CHL ? GO:0009765 ... A0A2P6TPU9 37566050
    23 8bd3:1 (2.73) BS06 CHL ? GO:0009765 ... A0A2P6TPU9 37566050
    24 8bd3:1 (2.73) BS07 CHL ? GO:0009765 ... A0A2P6TPU9 37566050
    25 8bd3:1 (2.73) BS08 CHL ? GO:0009765 ... A0A2P6TPU9 37566050
    26 8bd3:1 (2.73) BS09 CHL ? GO:0009765 ... A0A2P6TPU9 37566050
    27 8bd3:1 (2.73) BS10 CLA ? GO:0009765 ... A0A2P6TPU9 37566050
    28 8bd3:1 (2.73) BS11 CLA ? GO:0009765 ... A0A2P6TPU9 37566050
    29 8bd3:1 (2.73) BS12 CLA ? GO:0009765 ... A0A2P6TPU9 37566050
    30 8bd3:1 (2.73) BS13 CLA ? GO:0009765 ... A0A2P6TPU9 37566050
    31 8bd3:1 (2.73) BS14 CLA ? GO:0009765 ... A0A2P6TPU9 37566050
    32 8bd3:1 (2.73) BS15 CHL ? GO:0009765 ... A0A2P6TPU9 37566050
    33 8bd3:1 (2.73) BS16 CLA ? GO:0009765 ... A0A2P6TPU9 37566050
    34 8bd3:1 (2.73) BS17 CLA ? GO:0009765 ... A0A2P6TPU9 37566050
    35 8bd3:1 (2.73) BS18 CHL ? GO:0009765 ... A0A2P6TPU9 37566050
    36 8bd3:2 (2.73) BS01 CHL ? GO:0009765 ... A0A2P6TDA6 37566050
    37 8bd3:2 (2.73) BS02 CHL ? GO:0009765 ... A0A2P6TDA6 37566050
    38 8bd3:2 (2.73) BS03 CHL ? GO:0009765 ... A0A2P6TDA6 37566050
    39 8bd3:2 (2.73) BS04 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    40 8bd3:2 (2.73) BS05 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    41 8bd3:2 (2.73) BS06 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    42 8bd3:2 (2.73) BS07 CHL ? GO:0009765 ... A0A2P6TDA6 37566050
    43 8bd3:2 (2.73) BS08 CHL ? GO:0009765 ... A0A2P6TDA6 37566050
    44 8bd3:2 (2.73) BS09 CHL ? GO:0009765 ... A0A2P6TDA6 37566050
    45 8bd3:2 (2.73) BS10 CHL ? GO:0009765 ... A0A2P6TDA6 37566050
    46 8bd3:2 (2.73) BS11 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    47 8bd3:2 (2.73) BS12 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    48 8bd3:2 (2.73) BS13 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    49 8bd3:2 (2.73) BS14 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    50 8bd3:2 (2.73) BS15 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    51 8bd3:2 (2.73) BS16 RRX ? GO:0009765 ... A0A2P6TDA6 37566050
    52 8bd3:2 (2.73) BS17 CHL ? GO:0009765 ... A0A2P6TDA6 37566050
    53 8bd3:2 (2.73) BS18 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    54 8bd3:3 (2.73) BS01 CHL N/A GO:0009765 ... N/A 37566050
    55 8bd3:3 (2.73) BS02 CLA N/A GO:0009765 ... N/A 37566050
    56 8bd3:3 (2.73) BS03 CHL N/A GO:0009765 ... N/A 37566050
    57 8bd3:3 (2.73) BS04 CLA N/A GO:0009765 ... N/A 37566050
    58 8bd3:3 (2.73) BS05 CHL N/A GO:0009765 ... N/A 37566050
    59 8bd3:3 (2.73) BS06 CHL N/A GO:0009765 ... N/A 37566050
    60 8bd3:3 (2.73) BS07 CLA N/A GO:0009765 ... N/A 37566050
    61 8bd3:3 (2.73) BS08 CLA N/A GO:0009765 ... N/A 37566050
    62 8bd3:3 (2.73) BS09 CLA N/A GO:0009765 ... N/A 37566050
    63 8bd3:3 (2.73) BS10 CHL N/A GO:0009765 ... N/A 37566050
    64 8bd3:3 (2.73) BS11 CHL N/A GO:0009765 ... N/A 37566050
    65 8bd3:3 (2.73) BS12 CHL N/A GO:0009765 ... N/A 37566050
    66 8bd3:3 (2.73) BS13 CHL N/A GO:0009765 ... N/A 37566050
    67 8bd3:3 (2.73) BS14 CLA N/A GO:0009765 ... N/A 37566050
    68 8bd3:3 (2.73) BS15 CLA N/A GO:0009765 ... N/A 37566050
    69 8bd3:3 (2.73) BS16 CLA N/A GO:0009765 ... N/A 37566050
    70 8bd3:3 (2.73) BS17 CLA N/A GO:0009765 ... N/A 37566050
    71 8bd3:3 (2.73) BS18 CLA N/A GO:0009765 ... N/A 37566050
    72 8bd3:3 (2.73) BS19 CLA N/A GO:0009765 ... N/A 37566050
    73 8bd3:4 (2.73) BS01 CHL ? GO:0009765 ... A0A2P6TDA6 37566050
    74 8bd3:4 (2.73) BS02 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    75 8bd3:4 (2.73) BS03 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    76 8bd3:4 (2.73) BS04 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    77 8bd3:4 (2.73) BS05 CHL ? GO:0009765 ... A0A2P6TDA6 37566050
    78 8bd3:4 (2.73) BS06 CHL ? GO:0009765 ... A0A2P6TDA6 37566050
    79 8bd3:4 (2.73) BS07 CHL ? GO:0009765 ... A0A2P6TDA6 37566050
    80 8bd3:4 (2.73) BS08 CHL ? GO:0009765 ... A0A2P6TDA6 37566050
    81 8bd3:4 (2.73) BS09 CHL ? GO:0009765 ... A0A2P6TDA6 37566050
    82 8bd3:4 (2.73) BS10 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    83 8bd3:4 (2.73) BS11 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    84 8bd3:4 (2.73) BS12 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    85 8bd3:4 (2.73) BS13 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    86 8bd3:4 (2.73) BS14 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    87 8bd3:4 (2.73) BS15 RRX ? GO:0009765 ... A0A2P6TDA6 37566050
    88 8bd3:4 (2.73) BS16 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    89 8bd3:4 (2.73) BS17 CHL ? GO:0009765 ... A0A2P6TDA6 37566050
    90 8bd3:5 (2.73) BS01 CHL N/A GO:0009765 ... N/A 37566050
    91 8bd3:5 (2.73) BS02 CHL N/A GO:0009765 ... N/A 37566050
    92 8bd3:5 (2.73) BS03 CHL N/A GO:0009765 ... N/A 37566050
    93 8bd3:5 (2.73) BS04 CLA N/A GO:0009765 ... N/A 37566050
    94 8bd3:5 (2.73) BS05 CLA N/A GO:0009765 ... N/A 37566050
    95 8bd3:5 (2.73) BS06 CLA N/A GO:0009765 ... N/A 37566050
    96 8bd3:5 (2.73) BS07 CHL N/A GO:0009765 ... N/A 37566050
    97 8bd3:5 (2.73) BS08 CHL N/A GO:0009765 ... N/A 37566050
    98 8bd3:5 (2.73) BS09 CHL N/A GO:0009765 ... N/A 37566050
    99 8bd3:5 (2.73) BS10 CHL N/A GO:0009765 ... N/A 37566050
    100 8bd3:5 (2.73) BS11 CHL N/A GO:0009765 ... N/A 37566050
    101 8bd3:5 (2.73) BS12 CLA N/A GO:0009765 ... N/A 37566050
    102 8bd3:5 (2.73) BS13 CLA N/A GO:0009765 ... N/A 37566050
    103 8bd3:5 (2.73) BS14 CLA N/A GO:0009765 ... N/A 37566050
    104 8bd3:5 (2.73) BS15 CLA N/A GO:0009765 ... N/A 37566050
    105 8bd3:5 (2.73) BS16 CLA N/A GO:0009765 ... N/A 37566050
    106 8bd3:5 (2.73) BS17 CLA N/A GO:0009765 ... N/A 37566050
    107 8bd3:5 (2.73) BS18 CLA N/A GO:0009765 ... N/A 37566050
    108 8bd3:6 (2.73) BS01 CHL N/A GO:0009765 ... N/A 37566050
    109 8bd3:6 (2.73) BS02 CHL N/A GO:0009765 ... N/A 37566050
    110 8bd3:6 (2.73) BS03 CHL N/A GO:0009765 ... N/A 37566050
    111 8bd3:6 (2.73) BS04 CLA N/A GO:0009765 ... N/A 37566050
    112 8bd3:6 (2.73) BS05 CLA N/A GO:0009765 ... N/A 37566050
    113 8bd3:6 (2.73) BS06 CLA N/A GO:0009765 ... N/A 37566050
    114 8bd3:6 (2.73) BS07 CHL N/A GO:0009765 ... N/A 37566050
    115 8bd3:6 (2.73) BS08 CHL N/A GO:0009765 ... N/A 37566050
    116 8bd3:6 (2.73) BS09 CHL N/A GO:0009765 ... N/A 37566050
    117 8bd3:6 (2.73) BS10 CHL N/A GO:0009765 ... N/A 37566050
    118 8bd3:6 (2.73) BS11 CHL N/A GO:0009765 ... N/A 37566050
    119 8bd3:6 (2.73) BS12 CLA N/A GO:0009765 ... N/A 37566050
    120 8bd3:6 (2.73) BS13 CLA N/A GO:0009765 ... N/A 37566050
    121 8bd3:6 (2.73) BS14 CLA N/A GO:0009765 ... N/A 37566050
    122 8bd3:6 (2.73) BS15 CLA N/A GO:0009765 ... N/A 37566050
    123 8bd3:6 (2.73) BS16 CLA N/A GO:0009765 ... N/A 37566050
    124 8bd3:6 (2.73) BS17 CLA N/A GO:0009765 ... N/A 37566050
    125 8bd3:7 (2.73) BS01 CHL ? GO:0009765 ... A0A2P6TPU9 37566050
    126 8bd3:7 (2.73) BS02 CLA ? GO:0009765 ... A0A2P6TPU9 37566050
    127 8bd3:7 (2.73) BS03 CLA ? GO:0009765 ... A0A2P6TPU9 37566050
    128 8bd3:7 (2.73) BS04 CLA ? GO:0009765 ... A0A2P6TPU9 37566050
    129 8bd3:7 (2.73) BS05 CHL ? GO:0009765 ... A0A2P6TPU9 37566050
    130 8bd3:7 (2.73) BS06 CHL ? GO:0009765 ... A0A2P6TPU9 37566050
    131 8bd3:7 (2.73) BS07 CHL ? GO:0009765 ... A0A2P6TPU9 37566050
    132 8bd3:7 (2.73) BS08 CHL ? GO:0009765 ... A0A2P6TPU9 37566050
    133 8bd3:7 (2.73) BS09 CHL ? GO:0009765 ... A0A2P6TPU9 37566050
    134 8bd3:7 (2.73) BS10 CLA ? GO:0009765 ... A0A2P6TPU9 37566050
    135 8bd3:7 (2.73) BS11 CLA ? GO:0009765 ... A0A2P6TPU9 37566050
    136 8bd3:7 (2.73) BS12 CLA ? GO:0009765 ... A0A2P6TPU9 37566050
    137 8bd3:7 (2.73) BS13 CLA ? GO:0009765 ... A0A2P6TPU9 37566050
    138 8bd3:7 (2.73) BS14 CLA ? GO:0009765 ... A0A2P6TPU9 37566050
    139 8bd3:7 (2.73) BS15 CLA ? GO:0009765 ... A0A2P6TPU9 37566050
    140 8bd3:7 (2.73) BS16 CHL ? GO:0009765 ... A0A2P6TPU9 37566050
    141 8bd3:8 (2.73) BS01 CLA N/A GO:0009765 ... N/A 37566050
    142 8bd3:8 (2.73) BS02 CLA N/A GO:0009765 ... N/A 37566050
    143 8bd3:8 (2.73) BS03 CHL N/A GO:0009765 ... N/A 37566050
    144 8bd3:8 (2.73) BS04 CHL N/A GO:0009765 ... N/A 37566050
    145 8bd3:8 (2.73) BS05 CLA N/A GO:0009765 ... N/A 37566050
    146 8bd3:8 (2.73) BS06 CLA N/A GO:0009765 ... N/A 37566050
    147 8bd3:8 (2.73) BS07 CLA N/A GO:0009765 ... N/A 37566050
    148 8bd3:8 (2.73) BS08 CHL N/A GO:0009765 ... N/A 37566050
    149 8bd3:8 (2.73) BS09 CHL N/A GO:0009765 ... N/A 37566050
    150 8bd3:8 (2.73) BS10 CHL N/A GO:0009765 ... N/A 37566050
    151 8bd3:8 (2.73) BS11 CHL N/A GO:0009765 ... N/A 37566050
    152 8bd3:8 (2.73) BS12 CLA N/A GO:0009765 ... N/A 37566050
    153 8bd3:8 (2.73) BS13 CLA N/A GO:0009765 ... N/A 37566050
    154 8bd3:8 (2.73) BS14 CLA N/A GO:0009765 ... N/A 37566050
    155 8bd3:8 (2.73) BS15 CLA N/A GO:0009765 ... N/A 37566050
    156 8bd3:8 (2.73) BS16 CLA N/A GO:0009765 ... N/A 37566050
    157 8bd3:8 (2.73) BS17 CLA N/A GO:0009765 ... N/A 37566050
    158 8bd3:8 (2.73) BS18 CHL N/A GO:0009765 ... N/A 37566050
    159 8bd3:9 (2.73) BS01 CHL ? GO:0009765 ... A0A2P6TDA6 37566050
    160 8bd3:9 (2.73) BS02 CHL ? GO:0009765 ... A0A2P6TDA6 37566050
    161 8bd3:9 (2.73) BS03 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    162 8bd3:9 (2.73) BS04 CHL ? GO:0009765 ... A0A2P6TDA6 37566050
    163 8bd3:9 (2.73) BS05 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    164 8bd3:9 (2.73) BS06 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    165 8bd3:9 (2.73) BS07 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    166 8bd3:9 (2.73) BS08 CHL ? GO:0009765 ... A0A2P6TDA6 37566050
    167 8bd3:9 (2.73) BS09 CHL ? GO:0009765 ... A0A2P6TDA6 37566050
    168 8bd3:9 (2.73) BS10 CHL ? GO:0009765 ... A0A2P6TDA6 37566050
    169 8bd3:9 (2.73) BS11 CHL ? GO:0009765 ... A0A2P6TDA6 37566050
    170 8bd3:9 (2.73) BS12 CHL ? GO:0009765 ... A0A2P6TDA6 37566050
    171 8bd3:9 (2.73) BS13 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    172 8bd3:9 (2.73) BS14 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    173 8bd3:9 (2.73) BS15 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    174 8bd3:9 (2.73) BS16 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    175 8bd3:9 (2.73) BS17 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    176 8bd3:9 (2.73) BS18 RRX ? GO:0009765 ... A0A2P6TDA6 37566050
    177 8bd3:A (2.73) BS01 OEX 1.10.3.9 GO:0005506 ... W8SIR2 37566050
    178 8bd3:A (2.73) BS02 FE2 1.10.3.9 GO:0005506 ... W8SIR2 37566050
    179 8bd3:A (2.73) BS03 CLA 1.10.3.9 GO:0005506 ... W8SIR2 37566050
    180 8bd3:A (2.73) BS04 CLA 1.10.3.9 GO:0005506 ... W8SIR2 37566050
    181 8bd3:A (2.73) BS05 CLA 1.10.3.9 GO:0005506 ... W8SIR2 37566050
    182 8bd3:A (2.73) BS06 PHO 1.10.3.9 GO:0005506 ... W8SIR2 37566050
    183 8bd3:A (2.73) BS07 CLA 1.10.3.9 GO:0005506 ... W8SIR2 37566050
    184 8bd3:A (2.73) BS08 CLA 1.10.3.9 GO:0005506 ... W8SIR2 37566050
    185 8bd3:A (2.73) BS09 PHO 1.10.3.9 GO:0005506 ... W8SIR2 37566050
    186 8bd3:A (2.73) BS10 BCT 1.10.3.9 GO:0005506 ... W8SIR2 37566050
    187 8bd3:B (2.73) BS01 CLA ? GO:0009507 ... W8TIK4 37566050
    188 8bd3:B (2.73) BS02 CLA ? GO:0009507 ... W8TIK4 37566050
    189 8bd3:B (2.73) BS03 CLA ? GO:0009507 ... W8TIK4 37566050
    190 8bd3:B (2.73) BS04 CLA ? GO:0009507 ... W8TIK4 37566050
    191 8bd3:B (2.73) BS05 CLA ? GO:0009507 ... W8TIK4 37566050
    192 8bd3:B (2.73) BS06 CLA ? GO:0009507 ... W8TIK4 37566050
    193 8bd3:B (2.73) BS07 CLA ? GO:0009507 ... W8TIK4 37566050
    194 8bd3:B (2.73) BS08 CLA ? GO:0009507 ... W8TIK4 37566050
    195 8bd3:B (2.73) BS09 CLA ? GO:0009507 ... W8TIK4 37566050
    196 8bd3:B (2.73) BS10 CLA ? GO:0009507 ... W8TIK4 37566050
    197 8bd3:B (2.73) BS11 CLA ? GO:0009507 ... W8TIK4 37566050
    198 8bd3:B (2.73) BS12 CLA ? GO:0009507 ... W8TIK4 37566050
    199 8bd3:B (2.73) BS13 CLA ? GO:0009507 ... W8TIK4 37566050
    200 8bd3:B (2.73) BS14 CLA ? GO:0009507 ... W8TIK4 37566050

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417