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BioLiP
Download all results in tab-seperated text for 132 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7rcv:A (2.01) BS01 OEX 1.10.3.9 GO:0005506 ... P16033 34937700
    2 7rcv:A (2.01) BS02 FE2 1.10.3.9 GO:0005506 ... P16033 34937700
    3 7rcv:A (2.01) BS03 CLA 1.10.3.9 GO:0005506 ... P16033 34937700
    4 7rcv:A (2.01) BS04 CLA 1.10.3.9 GO:0005506 ... P16033 34937700
    5 7rcv:A (2.01) BS05 PHO 1.10.3.9 GO:0005506 ... P16033 34937700
    6 7rcv:A (2.01) BS06 CLA 1.10.3.9 GO:0005506 ... P16033 34937700
    7 7rcv:A (2.01) BS07 BCT 1.10.3.9 GO:0005506 ... P16033 34937700
    8 7rcv:A (2.01) BS08 CLA 1.10.3.9 GO:0005506 ... P16033 34937700
    9 7rcv:A (2.01) BS09 CLA 1.10.3.9 GO:0005506 ... P16033 34937700
    10 7rcv:A (2.01) BS10 PHO 1.10.3.9 GO:0005506 ... P16033 34937700
    11 7rcv:B (2.01) BS01 CLA ? GO:0009521 ... P05429 34937700
    12 7rcv:B (2.01) BS02 CLA ? GO:0009521 ... P05429 34937700
    13 7rcv:B (2.01) BS03 CLA ? GO:0009521 ... P05429 34937700
    14 7rcv:B (2.01) BS04 CLA ? GO:0009521 ... P05429 34937700
    15 7rcv:B (2.01) BS05 CLA ? GO:0009521 ... P05429 34937700
    16 7rcv:B (2.01) BS06 CLA ? GO:0009521 ... P05429 34937700
    17 7rcv:B (2.01) BS07 CLA ? GO:0009521 ... P05429 34937700
    18 7rcv:B (2.01) BS08 CLA ? GO:0009521 ... P05429 34937700
    19 7rcv:B (2.01) BS09 CLA ? GO:0009521 ... P05429 34937700
    20 7rcv:B (2.01) BS10 CLA ? GO:0009521 ... P05429 34937700
    21 7rcv:B (2.01) BS11 CLA ? GO:0009521 ... P05429 34937700
    22 7rcv:B (2.01) BS12 CLA ? GO:0009521 ... P05429 34937700
    23 7rcv:B (2.01) BS13 CLA ? GO:0009521 ... P05429 34937700
    24 7rcv:B (2.01) BS14 CLA ? GO:0009521 ... P05429 34937700
    25 7rcv:B (2.01) BS15 CLA ? GO:0009521 ... P05429 34937700
    26 7rcv:B (2.01) BS16 CLA ? GO:0009521 ... P05429 34937700
    27 7rcv:C (2.01) BS01 OEX ? GO:0005737 ... P09193 34937700
    28 7rcv:C (2.01) BS02 CLA ? GO:0005737 ... P09193 34937700
    29 7rcv:C (2.01) BS03 CLA ? GO:0005737 ... P09193 34937700
    30 7rcv:C (2.01) BS04 CLA ? GO:0005737 ... P09193 34937700
    31 7rcv:C (2.01) BS05 CLA ? GO:0005737 ... P09193 34937700
    32 7rcv:C (2.01) BS06 CLA ? GO:0005737 ... P09193 34937700
    33 7rcv:C (2.01) BS07 CLA ? GO:0005737 ... P09193 34937700
    34 7rcv:C (2.01) BS08 CLA ? GO:0005737 ... P09193 34937700
    35 7rcv:C (2.01) BS09 CLA ? GO:0005737 ... P09193 34937700
    36 7rcv:C (2.01) BS10 CLA ? GO:0005737 ... P09193 34937700
    37 7rcv:C (2.01) BS11 CLA ? GO:0005737 ... P09193 34937700
    38 7rcv:C (2.01) BS12 CLA ? GO:0005737 ... P09193 34937700
    39 7rcv:C (2.01) BS13 CLA ? GO:0005737 ... P09193 34937700
    40 7rcv:C (2.01) BS14 CLA ? GO:0005737 ... P09193 34937700
    41 7rcv:C (2.01) BS15 CA ? GO:0005737 ... P09193 34937700
    42 7rcv:D (2.01) BS01 FE2 1.10.3.9 GO:0005506 ... P09192 34937700
    43 7rcv:D (2.01) BS02 CLA 1.10.3.9 GO:0005506 ... P09192 34937700
    44 7rcv:D (2.01) BS03 PHO 1.10.3.9 GO:0005506 ... P09192 34937700
    45 7rcv:D (2.01) BS04 BCT 1.10.3.9 GO:0005506 ... P09192 34937700
    46 7rcv:D (2.01) BS05 CLA 1.10.3.9 GO:0005506 ... P09192 34937700
    47 7rcv:D (2.01) BS06 CLA 1.10.3.9 GO:0005506 ... P09192 34937700
    48 7rcv:D (2.01) BS07 PHO 1.10.3.9 GO:0005506 ... P09192 34937700
    49 7rcv:D (2.01) BS08 CLA 1.10.3.9 GO:0005506 ... P09192 34937700
    50 7rcv:D (2.01) BS09 CLA 1.10.3.9 GO:0005506 ... P09192 34937700
    51 7rcv:E (2.01) BS01 HEM ? GO:0005506 ... P09190 34937700
    52 7rcv:F (2.01) BS01 HEM ? GO:0005506 ... P09191 34937700
    53 7rcv:H (2.01) BS01 CLA ? GO:0009523 ... P14835 34937700
    54 7rcv:H (2.01) BS02 CLA ? GO:0009523 ... P14835 34937700
    55 7rcv:H (2.01) BS03 CLA ? GO:0009523 ... P14835 34937700
    56 7rcv:H (2.01) BS04 RRX ? GO:0009523 ... P14835 34937700
    57 7rcv:I (2.01) BS01 CLA ? GO:0005737 ... Q54697 34937700
    58 7rcv:K (2.01) BS01 CLA ? GO:0005737 ... P15819 34937700
    59 7rcv:K (2.01) BS02 CLA ? GO:0005737 ... P15819 34937700
    60 7rcv:K (2.01) BS03 CA ? GO:0005737 ... P15819 34937700
    61 7rcv:U (2.01) BS01 CA ? GO:0009523 ... Q55332 34937700
    62 7rcv:V (2.01) BS01 HEM ? GO:0005506 ... Q55013 34937700
    63 7rcv:V (2.01) BS02 CA ? GO:0005506 ... Q55013 34937700
    64 7rcv:X (2.01) BS01 CLA ? GO:0009523 ... P72575 34937700
    65 7rcv:X (2.01) BS02 RRX ? GO:0009523 ... P72575 34937700
    66 7rcv:Z (2.01) BS01 CLA ? GO:0009523 ... P73528 34937700
    67 7rcv:a (2.01) BS01 OEX 1.10.3.9 GO:0005506 ... P16033 34937700
    68 7rcv:a (2.01) BS02 FE2 1.10.3.9 GO:0005506 ... P16033 34937700
    69 7rcv:a (2.01) BS03 CLA 1.10.3.9 GO:0005506 ... P16033 34937700
    70 7rcv:a (2.01) BS04 CLA 1.10.3.9 GO:0005506 ... P16033 34937700
    71 7rcv:a (2.01) BS05 PHO 1.10.3.9 GO:0005506 ... P16033 34937700
    72 7rcv:a (2.01) BS06 CLA 1.10.3.9 GO:0005506 ... P16033 34937700
    73 7rcv:a (2.01) BS07 BCT 1.10.3.9 GO:0005506 ... P16033 34937700
    74 7rcv:a (2.01) BS08 CLA 1.10.3.9 GO:0005506 ... P16033 34937700
    75 7rcv:a (2.01) BS09 CLA 1.10.3.9 GO:0005506 ... P16033 34937700
    76 7rcv:a (2.01) BS10 PHO 1.10.3.9 GO:0005506 ... P16033 34937700
    77 7rcv:b (2.01) BS01 CLA ? GO:0009521 ... P05429 34937700
    78 7rcv:b (2.01) BS02 CLA ? GO:0009521 ... P05429 34937700
    79 7rcv:b (2.01) BS03 CLA ? GO:0009521 ... P05429 34937700
    80 7rcv:b (2.01) BS04 CLA ? GO:0009521 ... P05429 34937700
    81 7rcv:b (2.01) BS05 CLA ? GO:0009521 ... P05429 34937700
    82 7rcv:b (2.01) BS06 CLA ? GO:0009521 ... P05429 34937700
    83 7rcv:b (2.01) BS07 CLA ? GO:0009521 ... P05429 34937700
    84 7rcv:b (2.01) BS08 CLA ? GO:0009521 ... P05429 34937700
    85 7rcv:b (2.01) BS09 CLA ? GO:0009521 ... P05429 34937700
    86 7rcv:b (2.01) BS10 CLA ? GO:0009521 ... P05429 34937700
    87 7rcv:b (2.01) BS11 CLA ? GO:0009521 ... P05429 34937700
    88 7rcv:b (2.01) BS12 CLA ? GO:0009521 ... P05429 34937700
    89 7rcv:b (2.01) BS13 CLA ? GO:0009521 ... P05429 34937700
    90 7rcv:b (2.01) BS14 CLA ? GO:0009521 ... P05429 34937700
    91 7rcv:b (2.01) BS15 CLA ? GO:0009521 ... P05429 34937700
    92 7rcv:b (2.01) BS16 CLA ? GO:0009521 ... P05429 34937700
    93 7rcv:c (2.01) BS01 OEX ? GO:0005737 ... P09193 34937700
    94 7rcv:c (2.01) BS02 CLA ? GO:0005737 ... P09193 34937700
    95 7rcv:c (2.01) BS03 CLA ? GO:0005737 ... P09193 34937700
    96 7rcv:c (2.01) BS04 CLA ? GO:0005737 ... P09193 34937700
    97 7rcv:c (2.01) BS05 CLA ? GO:0005737 ... P09193 34937700
    98 7rcv:c (2.01) BS06 CLA ? GO:0005737 ... P09193 34937700
    99 7rcv:c (2.01) BS07 CLA ? GO:0005737 ... P09193 34937700
    100 7rcv:c (2.01) BS08 CLA ? GO:0005737 ... P09193 34937700
    101 7rcv:c (2.01) BS09 CLA ? GO:0005737 ... P09193 34937700
    102 7rcv:c (2.01) BS10 CLA ? GO:0005737 ... P09193 34937700
    103 7rcv:c (2.01) BS11 CLA ? GO:0005737 ... P09193 34937700
    104 7rcv:c (2.01) BS12 CLA ? GO:0005737 ... P09193 34937700
    105 7rcv:c (2.01) BS13 CLA ? GO:0005737 ... P09193 34937700
    106 7rcv:c (2.01) BS14 CLA ? GO:0005737 ... P09193 34937700
    107 7rcv:c (2.01) BS15 CA ? GO:0005737 ... P09193 34937700
    108 7rcv:d (2.01) BS01 FE2 1.10.3.9 GO:0005506 ... P09192 34937700
    109 7rcv:d (2.01) BS02 CLA 1.10.3.9 GO:0005506 ... P09192 34937700
    110 7rcv:d (2.01) BS03 PHO 1.10.3.9 GO:0005506 ... P09192 34937700
    111 7rcv:d (2.01) BS04 BCT 1.10.3.9 GO:0005506 ... P09192 34937700
    112 7rcv:d (2.01) BS05 CLA 1.10.3.9 GO:0005506 ... P09192 34937700
    113 7rcv:d (2.01) BS06 CLA 1.10.3.9 GO:0005506 ... P09192 34937700
    114 7rcv:d (2.01) BS07 PHO 1.10.3.9 GO:0005506 ... P09192 34937700
    115 7rcv:d (2.01) BS08 CLA 1.10.3.9 GO:0005506 ... P09192 34937700
    116 7rcv:d (2.01) BS09 CLA 1.10.3.9 GO:0005506 ... P09192 34937700
    117 7rcv:e (2.01) BS01 HEM ? GO:0005506 ... P09190 34937700
    118 7rcv:f (2.01) BS01 HEM ? GO:0005506 ... P09191 34937700
    119 7rcv:h (2.01) BS01 CLA ? GO:0009523 ... P14835 34937700
    120 7rcv:h (2.01) BS02 CLA ? GO:0009523 ... P14835 34937700
    121 7rcv:h (2.01) BS03 CLA ? GO:0009523 ... P14835 34937700
    122 7rcv:h (2.01) BS04 RRX ? GO:0009523 ... P14835 34937700
    123 7rcv:i (2.01) BS01 CLA ? GO:0005737 ... Q54697 34937700
    124 7rcv:k (2.01) BS01 CLA ? GO:0005737 ... P15819 34937700
    125 7rcv:k (2.01) BS02 CLA ? GO:0005737 ... P15819 34937700
    126 7rcv:k (2.01) BS03 CA ? GO:0005737 ... P15819 34937700
    127 7rcv:u (2.01) BS01 CA ? GO:0009523 ... Q55332 34937700
    128 7rcv:v (2.01) BS01 HEM ? GO:0005506 ... Q55013 34937700
    129 7rcv:v (2.01) BS02 CA ? GO:0005506 ... Q55013 34937700
    130 7rcv:x (2.01) BS01 CLA ? GO:0009523 ... P72575 34937700
    131 7rcv:x (2.01) BS02 RRX ? GO:0009523 ... P72575 34937700
    132 7rcv:z (2.01) BS01 CLA ? GO:0009523 ... P73528 34937700
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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