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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 274 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7r3k:1 (2.52) BS01 C7Z ? GO:0009416 ... Q05093 36979472
    2 7r3k:1 (2.52) BS02 CLA ? GO:0009416 ... Q05093 36979472
    3 7r3k:1 (2.52) BS03 CLA ? GO:0009416 ... Q05093 36979472
    4 7r3k:1 (2.52) BS04 CLA ? GO:0009416 ... Q05093 36979472
    5 7r3k:1 (2.52) BS05 CHL ? GO:0009416 ... Q05093 36979472
    6 7r3k:1 (2.52) BS06 CLA ? GO:0009416 ... Q05093 36979472
    7 7r3k:1 (2.52) BS07 CLA ? GO:0009416 ... Q05093 36979472
    8 7r3k:1 (2.52) BS08 CLA ? GO:0009416 ... Q05093 36979472
    9 7r3k:1 (2.52) BS09 CLA ? GO:0009416 ... Q05093 36979472
    10 7r3k:1 (2.52) BS10 CHL ? GO:0009416 ... Q05093 36979472
    11 7r3k:1 (2.52) BS11 CLA ? GO:0009416 ... Q05093 36979472
    12 7r3k:1 (2.52) BS12 CLA ? GO:0009416 ... Q05093 36979472
    13 7r3k:1 (2.52) BS13 CHL ? GO:0009416 ... Q05093 36979472
    14 7r3k:1 (2.52) BS14 CLA ? GO:0009416 ... Q05093 36979472
    15 7r3k:1 (2.52) BS15 CHL ? GO:0009416 ... Q05093 36979472
    16 7r3k:3 (2.52) BS01 CLA ? GO:0009416 ... Q75VY9 36979472
    17 7r3k:3 (2.52) BS02 CLA ? GO:0009416 ... Q75VY9 36979472
    18 7r3k:3 (2.52) BS03 CLA ? GO:0009416 ... Q75VY9 36979472
    19 7r3k:3 (2.52) BS04 CLA ? GO:0009416 ... Q75VY9 36979472
    20 7r3k:3 (2.52) BS05 CLA ? GO:0009416 ... Q75VY9 36979472
    21 7r3k:3 (2.52) BS06 CLA ? GO:0009416 ... Q75VY9 36979472
    22 7r3k:3 (2.52) BS07 CLA ? GO:0009416 ... Q75VY9 36979472
    23 7r3k:3 (2.52) BS08 CLA ? GO:0009416 ... Q75VY9 36979472
    24 7r3k:3 (2.52) BS09 CLA ? GO:0009416 ... Q75VY9 36979472
    25 7r3k:3 (2.52) BS10 CLA ? GO:0009416 ... Q75VY9 36979472
    26 7r3k:3 (2.52) BS11 CLA ? GO:0009416 ... Q75VY9 36979472
    27 7r3k:3 (2.52) BS12 CHL ? GO:0009416 ... Q75VY9 36979472
    28 7r3k:3 (2.52) BS13 CLA ? GO:0009416 ... Q75VY9 36979472
    29 7r3k:3 (2.52) BS14 CLA ? GO:0009416 ... Q75VY9 36979472
    30 7r3k:3 (2.52) BS15 CLA ? GO:0009416 ... Q75VY9 36979472
    31 7r3k:3 (2.52) BS16 CHL ? GO:0009416 ... Q75VY9 36979472
    32 7r3k:3 (2.52) BS17 CLA ? GO:0009416 ... Q75VY9 36979472
    33 7r3k:4 (2.52) BS01 CHL ? GO:0009416 ... Q75VZ0 36979472
    34 7r3k:4 (2.52) BS02 RRX ? GO:0009416 ... Q75VZ0 36979472
    35 7r3k:4 (2.52) BS03 CLA ? GO:0009416 ... Q75VZ0 36979472
    36 7r3k:4 (2.52) BS04 CLA ? GO:0009416 ... Q75VZ0 36979472
    37 7r3k:4 (2.52) BS05 CLA ? GO:0009416 ... Q75VZ0 36979472
    38 7r3k:4 (2.52) BS06 CLA ? GO:0009416 ... Q75VZ0 36979472
    39 7r3k:4 (2.52) BS07 CLA ? GO:0009416 ... Q75VZ0 36979472
    40 7r3k:4 (2.52) BS08 CLA ? GO:0009416 ... Q75VZ0 36979472
    41 7r3k:4 (2.52) BS09 CLA ? GO:0009416 ... Q75VZ0 36979472
    42 7r3k:4 (2.52) BS10 CLA ? GO:0009416 ... Q75VZ0 36979472
    43 7r3k:4 (2.52) BS11 CHL ? GO:0009416 ... Q75VZ0 36979472
    44 7r3k:4 (2.52) BS12 CHL ? GO:0009416 ... Q75VZ0 36979472
    45 7r3k:4 (2.52) BS13 CLA ? GO:0009416 ... Q75VZ0 36979472
    46 7r3k:4 (2.52) BS14 CHL ? GO:0009416 ... Q75VZ0 36979472
    47 7r3k:4 (2.52) BS15 CLA ? GO:0009416 ... Q75VZ0 36979472
    48 7r3k:4 (2.52) BS16 CHL ? GO:0009416 ... Q75VZ0 36979472
    49 7r3k:4 (2.52) BS17 CLA ? GO:0009416 ... Q75VZ0 36979472
    50 7r3k:5 (2.52) BS01 CLA ? GO:0009416 ... Q75VY8 36979472
    51 7r3k:5 (2.52) BS02 RRX ? GO:0009416 ... Q75VY8 36979472
    52 7r3k:5 (2.52) BS03 CLA ? GO:0009416 ... Q75VY8 36979472
    53 7r3k:5 (2.52) BS04 CLA ? GO:0009416 ... Q75VY8 36979472
    54 7r3k:5 (2.52) BS05 CLA ? GO:0009416 ... Q75VY8 36979472
    55 7r3k:5 (2.52) BS06 CLA ? GO:0009416 ... Q75VY8 36979472
    56 7r3k:5 (2.52) BS07 CLA ? GO:0009416 ... Q75VY8 36979472
    57 7r3k:5 (2.52) BS08 CLA ? GO:0009416 ... Q75VY8 36979472
    58 7r3k:5 (2.52) BS09 CLA ? GO:0009416 ... Q75VY8 36979472
    59 7r3k:5 (2.52) BS10 CLA ? GO:0009416 ... Q75VY8 36979472
    60 7r3k:5 (2.52) BS11 CLA ? GO:0009416 ... Q75VY8 36979472
    61 7r3k:5 (2.52) BS12 CHL ? GO:0009416 ... Q75VY8 36979472
    62 7r3k:5 (2.52) BS13 CHL ? GO:0009416 ... Q75VY8 36979472
    63 7r3k:5 (2.52) BS14 CLA ? GO:0009416 ... Q75VY8 36979472
    64 7r3k:5 (2.52) BS15 CHL ? GO:0009416 ... Q75VY8 36979472
    65 7r3k:5 (2.52) BS16 CLA ? GO:0009416 ... Q75VY8 36979472
    66 7r3k:5 (2.52) BS17 CHL ? GO:0009416 ... Q75VY8 36979472
    67 7r3k:5 (2.52) BS18 CLA ? GO:0009416 ... Q75VY8 36979472
    68 7r3k:5 (2.52) BS19 CLA ? GO:0009416 ... Q75VY8 36979472
    69 7r3k:5 (2.52) BS20 CLA ? GO:0009416 ... Q75VY8 36979472
    70 7r3k:5 (2.52) BS21 C7Z ? GO:0009416 ... Q75VY8 36979472
    71 7r3k:5 (2.52) BS22 CHL ? GO:0009416 ... Q75VY8 36979472
    72 7r3k:6 (2.52) BS01 CLA ? GO:0009416 ... Q75VY6 36979472
    73 7r3k:6 (2.52) BS02 CLA ? GO:0009416 ... Q75VY6 36979472
    74 7r3k:6 (2.52) BS03 CLA ? GO:0009416 ... Q75VY6 36979472
    75 7r3k:6 (2.52) BS04 CLA ? GO:0009416 ... Q75VY6 36979472
    76 7r3k:6 (2.52) BS05 CLA ? GO:0009416 ... Q75VY6 36979472
    77 7r3k:6 (2.52) BS06 CLA ? GO:0009416 ... Q75VY6 36979472
    78 7r3k:6 (2.52) BS07 CLA ? GO:0009416 ... Q75VY6 36979472
    79 7r3k:6 (2.52) BS08 CLA ? GO:0009416 ... Q75VY6 36979472
    80 7r3k:6 (2.52) BS09 CLA ? GO:0009416 ... Q75VY6 36979472
    81 7r3k:6 (2.52) BS10 CLA ? GO:0009416 ... Q75VY6 36979472
    82 7r3k:6 (2.52) BS11 CHL ? GO:0009416 ... Q75VY6 36979472
    83 7r3k:6 (2.52) BS12 CHL ? GO:0009416 ... Q75VY6 36979472
    84 7r3k:6 (2.52) BS13 CHL ? GO:0009416 ... Q75VY6 36979472
    85 7r3k:6 (2.52) BS14 CLA ? GO:0009416 ... Q75VY6 36979472
    86 7r3k:6 (2.52) BS15 CHL ? GO:0009416 ... Q75VY6 36979472
    87 7r3k:6 (2.52) BS16 CLA ? GO:0009416 ... Q75VY6 36979472
    88 7r3k:6 (2.52) BS17 CHL ? GO:0009416 ... Q75VY6 36979472
    89 7r3k:6 (2.52) BS18 CLA ? GO:0009416 ... Q75VY6 36979472
    90 7r3k:6 (2.52) BS19 CLA ? GO:0009416 ... Q75VY6 36979472
    91 7r3k:6 (2.52) BS20 ERG ? GO:0009416 ... Q75VY6 36979472
    92 7r3k:7 (2.52) BS01 CLA ? GO:0009416 ... Q84Y02 36979472
    93 7r3k:7 (2.52) BS02 CLA ? GO:0009416 ... Q84Y02 36979472
    94 7r3k:7 (2.52) BS03 CLA ? GO:0009416 ... Q84Y02 36979472
    95 7r3k:7 (2.52) BS04 CLA ? GO:0009416 ... Q84Y02 36979472
    96 7r3k:7 (2.52) BS05 CLA ? GO:0009416 ... Q84Y02 36979472
    97 7r3k:7 (2.52) BS06 CLA ? GO:0009416 ... Q84Y02 36979472
    98 7r3k:7 (2.52) BS07 CLA ? GO:0009416 ... Q84Y02 36979472
    99 7r3k:7 (2.52) BS08 CLA ? GO:0009416 ... Q84Y02 36979472
    100 7r3k:7 (2.52) BS09 CHL ? GO:0009416 ... Q84Y02 36979472
    101 7r3k:7 (2.52) BS10 CHL ? GO:0009416 ... Q84Y02 36979472
    102 7r3k:7 (2.52) BS11 CLA ? GO:0009416 ... Q84Y02 36979472
    103 7r3k:7 (2.52) BS12 CLA ? GO:0009416 ... Q84Y02 36979472
    104 7r3k:7 (2.52) BS13 CLA ? GO:0009416 ... Q84Y02 36979472
    105 7r3k:7 (2.52) BS14 CLA ? GO:0009416 ... Q84Y02 36979472
    106 7r3k:7 (2.52) BS15 CLA ? GO:0009416 ... Q84Y02 36979472
    107 7r3k:7 (2.52) BS16 CHL ? GO:0009416 ... Q84Y02 36979472
    108 7r3k:7 (2.52) BS17 CLA ? GO:0009416 ... Q84Y02 36979472
    109 7r3k:7 (2.52) BS18 ERG ? GO:0009416 ... Q84Y02 36979472
    110 7r3k:8 (2.52) BS01 CLA ? GO:0009416 ... Q75VY7 36979472
    111 7r3k:8 (2.52) BS02 CHL ? GO:0009416 ... Q75VY7 36979472
    112 7r3k:8 (2.52) BS03 CLA ? GO:0009416 ... Q75VY7 36979472
    113 7r3k:8 (2.52) BS04 CLA ? GO:0009416 ... Q75VY7 36979472
    114 7r3k:8 (2.52) BS05 CLA ? GO:0009416 ... Q75VY7 36979472
    115 7r3k:8 (2.52) BS06 CLA ? GO:0009416 ... Q75VY7 36979472
    116 7r3k:8 (2.52) BS07 CLA ? GO:0009416 ... Q75VY7 36979472
    117 7r3k:8 (2.52) BS08 CLA ? GO:0009416 ... Q75VY7 36979472
    118 7r3k:8 (2.52) BS09 CLA ? GO:0009416 ... Q75VY7 36979472
    119 7r3k:8 (2.52) BS10 CLA ? GO:0009416 ... Q75VY7 36979472
    120 7r3k:8 (2.52) BS11 CHL ? GO:0009416 ... Q75VY7 36979472
    121 7r3k:8 (2.52) BS12 CHL ? GO:0009416 ... Q75VY7 36979472
    122 7r3k:8 (2.52) BS13 CHL ? GO:0009416 ... Q75VY7 36979472
    123 7r3k:8 (2.52) BS14 CLA ? GO:0009416 ... Q75VY7 36979472
    124 7r3k:8 (2.52) BS15 CHL ? GO:0009416 ... Q75VY7 36979472
    125 7r3k:8 (2.52) BS16 CLA ? GO:0009416 ... Q75VY7 36979472
    126 7r3k:8 (2.52) BS17 ERG ? GO:0009416 ... Q75VY7 36979472
    127 7r3k:A (2.52) BS01 CL0 1.97.1.12 GO:0000287 ... P12154 36979472
    128 7r3k:A (2.52) BS02 CLA 1.97.1.12 GO:0000287 ... P12154 36979472
    129 7r3k:A (2.52) BS03 CLA 1.97.1.12 GO:0000287 ... P12154 36979472
    130 7r3k:A (2.52) BS04 CLA 1.97.1.12 GO:0000287 ... P12154 36979472
    131 7r3k:A (2.52) BS05 CLA 1.97.1.12 GO:0000287 ... P12154 36979472
    132 7r3k:A (2.52) BS06 CLA 1.97.1.12 GO:0000287 ... P12154 36979472
    133 7r3k:A (2.52) BS07 CLA 1.97.1.12 GO:0000287 ... P12154 36979472
    134 7r3k:A (2.52) BS08 CLA 1.97.1.12 GO:0000287 ... P12154 36979472
    135 7r3k:A (2.52) BS09 CLA 1.97.1.12 GO:0000287 ... P12154 36979472
    136 7r3k:A (2.52) BS10 CLA 1.97.1.12 GO:0000287 ... P12154 36979472
    137 7r3k:A (2.52) BS11 CLA 1.97.1.12 GO:0000287 ... P12154 36979472
    138 7r3k:A (2.52) BS12 CLA 1.97.1.12 GO:0000287 ... P12154 36979472
    139 7r3k:A (2.52) BS13 CLA 1.97.1.12 GO:0000287 ... P12154 36979472
    140 7r3k:A (2.52) BS14 CLA 1.97.1.12 GO:0000287 ... P12154 36979472
    141 7r3k:A (2.52) BS15 CLA 1.97.1.12 GO:0000287 ... P12154 36979472
    142 7r3k:A (2.52) BS16 CLA 1.97.1.12 GO:0000287 ... P12154 36979472
    143 7r3k:A (2.52) BS17 CLA 1.97.1.12 GO:0000287 ... P12154 36979472
    144 7r3k:A (2.52) BS18 CLA 1.97.1.12 GO:0000287 ... P12154 36979472
    145 7r3k:A (2.52) BS19 CLA 1.97.1.12 GO:0000287 ... P12154 36979472
    146 7r3k:A (2.52) BS20 CLA 1.97.1.12 GO:0000287 ... P12154 36979472
    147 7r3k:A (2.52) BS21 CLA 1.97.1.12 GO:0000287 ... P12154 36979472
    148 7r3k:A (2.52) BS22 CLA 1.97.1.12 GO:0000287 ... P12154 36979472
    149 7r3k:A (2.52) BS23 CLA 1.97.1.12 GO:0000287 ... P12154 36979472
    150 7r3k:A (2.52) BS24 CLA 1.97.1.12 GO:0000287 ... P12154 36979472
    151 7r3k:A (2.52) BS25 CLA 1.97.1.12 GO:0000287 ... P12154 36979472
    152 7r3k:A (2.52) BS26 CLA 1.97.1.12 GO:0000287 ... P12154 36979472
    153 7r3k:A (2.52) BS27 CLA 1.97.1.12 GO:0000287 ... P12154 36979472
    154 7r3k:A (2.52) BS28 CLA 1.97.1.12 GO:0000287 ... P12154 36979472
    155 7r3k:A (2.52) BS29 CLA 1.97.1.12 GO:0000287 ... P12154 36979472
    156 7r3k:A (2.52) BS30 CLA 1.97.1.12 GO:0000287 ... P12154 36979472
    157 7r3k:A (2.52) BS31 CLA 1.97.1.12 GO:0000287 ... P12154 36979472
    158 7r3k:A (2.52) BS32 CLA 1.97.1.12 GO:0000287 ... P12154 36979472
    159 7r3k:A (2.52) BS33 CLA 1.97.1.12 GO:0000287 ... P12154 36979472
    160 7r3k:A (2.52) BS34 CLA 1.97.1.12 GO:0000287 ... P12154 36979472
    161 7r3k:A (2.52) BS35 CLA 1.97.1.12 GO:0000287 ... P12154 36979472
    162 7r3k:A (2.52) BS36 CLA 1.97.1.12 GO:0000287 ... P12154 36979472
    163 7r3k:A (2.52) BS37 CLA 1.97.1.12 GO:0000287 ... P12154 36979472
    164 7r3k:A (2.52) BS38 CLA 1.97.1.12 GO:0000287 ... P12154 36979472
    165 7r3k:A (2.52) BS39 CLA 1.97.1.12 GO:0000287 ... P12154 36979472
    166 7r3k:A (2.52) BS40 CLA 1.97.1.12 GO:0000287 ... P12154 36979472
    167 7r3k:A (2.52) BS41 CLA 1.97.1.12 GO:0000287 ... P12154 36979472
    168 7r3k:A (2.52) BS42 CLA 1.97.1.12 GO:0000287 ... P12154 36979472
    169 7r3k:A (2.52) BS43 CLA 1.97.1.12 GO:0000287 ... P12154 36979472
    170 7r3k:A (2.52) BS44 PQN 1.97.1.12 GO:0000287 ... P12154 36979472
    171 7r3k:A (2.52) BS45 SF4 1.97.1.12 GO:0000287 ... P12154 36979472
    172 7r3k:A (2.52) BS46 CLA 1.97.1.12 GO:0000287 ... P12154 36979472
    173 7r3k:A (2.52) BS47 CLA 1.97.1.12 GO:0000287 ... P12154 36979472
    174 7r3k:A (2.52) BS48 CLA 1.97.1.12 GO:0000287 ... P12154 36979472
    175 7r3k:A (2.52) BS49 CLA 1.97.1.12 GO:0000287 ... P12154 36979472
    176 7r3k:A (2.52) BS50 CLA 1.97.1.12 GO:0000287 ... P12154 36979472
    177 7r3k:A (2.52) BS51 CLA 1.97.1.12 GO:0000287 ... P12154 36979472
    178 7r3k:A (2.52) BS52 C7Z 1.97.1.12 GO:0000287 ... P12154 36979472
    179 7r3k:A (2.52) BS53 CLA 1.97.1.12 GO:0000287 ... P12154 36979472
    180 7r3k:A (2.52) BS54 CLA 1.97.1.12 GO:0000287 ... P12154 36979472
    181 7r3k:B (2.52) BS01 CL0 1.97.1.12 GO:0000287 ... P09144 36979472
    182 7r3k:B (2.52) BS02 CLA 1.97.1.12 GO:0000287 ... P09144 36979472
    183 7r3k:B (2.52) BS03 CLA 1.97.1.12 GO:0000287 ... P09144 36979472
    184 7r3k:B (2.52) BS04 CLA 1.97.1.12 GO:0000287 ... P09144 36979472
    185 7r3k:B (2.52) BS05 SF4 1.97.1.12 GO:0000287 ... P09144 36979472
    186 7r3k:B (2.52) BS06 CLA 1.97.1.12 GO:0000287 ... P09144 36979472
    187 7r3k:B (2.52) BS07 CLA 1.97.1.12 GO:0000287 ... P09144 36979472
    188 7r3k:B (2.52) BS08 CLA 1.97.1.12 GO:0000287 ... P09144 36979472
    189 7r3k:B (2.52) BS09 CLA 1.97.1.12 GO:0000287 ... P09144 36979472
    190 7r3k:B (2.52) BS10 CLA 1.97.1.12 GO:0000287 ... P09144 36979472
    191 7r3k:B (2.52) BS11 CLA 1.97.1.12 GO:0000287 ... P09144 36979472
    192 7r3k:B (2.52) BS12 CLA 1.97.1.12 GO:0000287 ... P09144 36979472
    193 7r3k:B (2.52) BS13 CLA 1.97.1.12 GO:0000287 ... P09144 36979472
    194 7r3k:B (2.52) BS14 CLA 1.97.1.12 GO:0000287 ... P09144 36979472
    195 7r3k:B (2.52) BS15 CLA 1.97.1.12 GO:0000287 ... P09144 36979472
    196 7r3k:B (2.52) BS16 CLA 1.97.1.12 GO:0000287 ... P09144 36979472
    197 7r3k:B (2.52) BS17 CLA 1.97.1.12 GO:0000287 ... P09144 36979472
    198 7r3k:B (2.52) BS18 CLA 1.97.1.12 GO:0000287 ... P09144 36979472
    199 7r3k:B (2.52) BS19 CLA 1.97.1.12 GO:0000287 ... P09144 36979472
    200 7r3k:B (2.52) BS20 CLA 1.97.1.12 GO:0000287 ... P09144 36979472
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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