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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 206 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7pnk:A (3.61) BS01 OEX 1.10.3.9 GO:0005506 ... D0FY08 36799903
    2 7pnk:A (3.61) BS02 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    3 7pnk:A (3.61) BS03 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    4 7pnk:A (3.61) BS04 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    5 7pnk:A (3.61) BS05 PHO 1.10.3.9 GO:0005506 ... D0FY08 36799903
    6 7pnk:A (3.61) BS06 PHO 1.10.3.9 GO:0005506 ... D0FY08 36799903
    7 7pnk:A (3.61) BS07 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    8 7pnk:A (3.61) BS08 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    9 7pnk:A (3.61) BS09 BCT 1.10.3.9 GO:0005506 ... D0FY08 36799903
    10 7pnk:A (3.61) BS10 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    11 7pnk:B (3.61) BS01 peptide ? GO:0009507 ... A0A1C8XRM6 36799903
    12 7pnk:B (3.61) BS02 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    13 7pnk:B (3.61) BS03 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    14 7pnk:B (3.61) BS04 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    15 7pnk:B (3.61) BS05 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    16 7pnk:B (3.61) BS06 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    17 7pnk:B (3.61) BS07 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    18 7pnk:B (3.61) BS08 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    19 7pnk:B (3.61) BS09 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    20 7pnk:B (3.61) BS10 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    21 7pnk:B (3.61) BS11 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    22 7pnk:B (3.61) BS12 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    23 7pnk:B (3.61) BS13 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    24 7pnk:B (3.61) BS14 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    25 7pnk:B (3.61) BS15 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    26 7pnk:B (3.61) BS16 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    27 7pnk:B (3.61) BS17 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    28 7pnk:B (3.61) BS18 C7Z ? GO:0009507 ... A0A1C8XRM6 36799903
    29 7pnk:C (3.61) BS01 OEX ? GO:0005737 ... D0FXY3 36799903
    30 7pnk:C (3.61) BS02 CLA ? GO:0005737 ... D0FXY3 36799903
    31 7pnk:C (3.61) BS03 CLA ? GO:0005737 ... D0FXY3 36799903
    32 7pnk:C (3.61) BS04 CLA ? GO:0005737 ... D0FXY3 36799903
    33 7pnk:C (3.61) BS05 CLA ? GO:0005737 ... D0FXY3 36799903
    34 7pnk:C (3.61) BS06 CLA ? GO:0005737 ... D0FXY3 36799903
    35 7pnk:C (3.61) BS07 CLA ? GO:0005737 ... D0FXY3 36799903
    36 7pnk:C (3.61) BS08 CLA ? GO:0005737 ... D0FXY3 36799903
    37 7pnk:C (3.61) BS09 CLA ? GO:0005737 ... D0FXY3 36799903
    38 7pnk:C (3.61) BS10 CLA ? GO:0005737 ... D0FXY3 36799903
    39 7pnk:C (3.61) BS11 CLA ? GO:0005737 ... D0FXY3 36799903
    40 7pnk:C (3.61) BS12 CLA ? GO:0005737 ... D0FXY3 36799903
    41 7pnk:C (3.61) BS13 CLA ? GO:0005737 ... D0FXY3 36799903
    42 7pnk:C (3.61) BS14 CLA ? GO:0005737 ... D0FXY3 36799903
    43 7pnk:C (3.61) BS15 LMK ? GO:0005737 ... D0FXY3 36799903
    44 7pnk:C (3.61) BS16 LPX ? GO:0005737 ... D0FXY3 36799903
    45 7pnk:D (3.61) BS01 peptide 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    46 7pnk:D (3.61) BS02 FE2 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    47 7pnk:D (3.61) BS03 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    48 7pnk:D (3.61) BS04 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    49 7pnk:D (3.61) BS05 PHO 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    50 7pnk:D (3.61) BS06 PHO 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    51 7pnk:D (3.61) BS07 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    52 7pnk:D (3.61) BS08 BCT 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    53 7pnk:D (3.61) BS09 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    54 7pnk:D (3.61) BS10 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    55 7pnk:E (3.61) BS01 peptide ? GO:0005506 ... D0FY01 36799903
    56 7pnk:E (3.61) BS02 HEM ? GO:0005506 ... D0FY01 36799903
    57 7pnk:F (3.61) BS01 HEM ? GO:0009523 ... A0A1C8XRP4 36799903
    58 7pnk:G (3.61) BS01 CHL ? GO:0009765 ... A1XKU7 36799903
    59 7pnk:G (3.61) BS02 CLA ? GO:0009765 ... A1XKU7 36799903
    60 7pnk:G (3.61) BS03 CLA ? GO:0009765 ... A1XKU7 36799903
    61 7pnk:G (3.61) BS04 CHL ? GO:0009765 ... A1XKU7 36799903
    62 7pnk:G (3.61) BS05 CHL ? GO:0009765 ... A1XKU7 36799903
    63 7pnk:G (3.61) BS06 CHL ? GO:0009765 ... A1XKU7 36799903
    64 7pnk:G (3.61) BS07 CHL ? GO:0009765 ... A1XKU7 36799903
    65 7pnk:G (3.61) BS08 CHL ? GO:0009765 ... A1XKU7 36799903
    66 7pnk:G (3.61) BS09 CLA ? GO:0009765 ... A1XKU7 36799903
    67 7pnk:G (3.61) BS10 CLA ? GO:0009765 ... A1XKU7 36799903
    68 7pnk:G (3.61) BS11 CLA ? GO:0009765 ... A1XKU7 36799903
    69 7pnk:G (3.61) BS12 CLA ? GO:0009765 ... A1XKU7 36799903
    70 7pnk:G (3.61) BS13 CLA ? GO:0009765 ... A1XKU7 36799903
    71 7pnk:G (3.61) BS14 CHL ? GO:0009765 ... A1XKU7 36799903
    72 7pnk:G (3.61) BS15 CHL ? GO:0009765 ... A1XKU7 36799903
    73 7pnk:H (3.61) BS01 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    74 7pnk:H (3.61) BS02 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    75 7pnk:H (3.61) BS03 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    76 7pnk:H (3.61) BS04 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    77 7pnk:H (3.61) BS05 RRX ? GO:0009523 ... A0A1C8XRP3 36799903
    78 7pnk:I (3.61) BS01 CLA ? GO:0005737 ... D0FXX5 36799903
    79 7pnk:I (3.61) BS02 CLA ? GO:0005737 ... D0FXX5 36799903
    80 7pnk:I (3.61) BS03 4RF ? GO:0005737 ... D0FXX5 36799903
    81 7pnk:J (3.61) BS01 4RF ? GO:0009523 ... A0A1C8XRM8 36799903
    82 7pnk:K (3.61) BS01 CLA ? GO:0009523 ... D0FXX2 36799903
    83 7pnk:K (3.61) BS02 CLA ? GO:0009523 ... D0FXX2 36799903
    84 7pnk:K (3.61) BS03 4RF ? GO:0009523 ... D0FXX2 36799903
    85 7pnk:M (3.61) BS01 CLA ? GO:0009523 ... D0FXZ3 36799903
    86 7pnk:N (3.61) BS01 CHL N/A GO:0009765 ... N/A 36799903
    87 7pnk:N (3.61) BS02 CLA N/A GO:0009765 ... N/A 36799903
    88 7pnk:N (3.61) BS03 CLA N/A GO:0009765 ... N/A 36799903
    89 7pnk:N (3.61) BS04 CLA N/A GO:0009765 ... N/A 36799903
    90 7pnk:N (3.61) BS05 CHL N/A GO:0009765 ... N/A 36799903
    91 7pnk:N (3.61) BS06 CHL N/A GO:0009765 ... N/A 36799903
    92 7pnk:N (3.61) BS07 CHL N/A GO:0009765 ... N/A 36799903
    93 7pnk:N (3.61) BS08 CHL N/A GO:0009765 ... N/A 36799903
    94 7pnk:N (3.61) BS09 CHL N/A GO:0009765 ... N/A 36799903
    95 7pnk:N (3.61) BS10 CLA N/A GO:0009765 ... N/A 36799903
    96 7pnk:N (3.61) BS11 CLA N/A GO:0009765 ... N/A 36799903
    97 7pnk:N (3.61) BS12 CLA N/A GO:0009765 ... N/A 36799903
    98 7pnk:N (3.61) BS13 CLA N/A GO:0009765 ... N/A 36799903
    99 7pnk:N (3.61) BS14 CLA N/A GO:0009765 ... N/A 36799903
    100 7pnk:N (3.61) BS15 CHL N/A GO:0009765 ... N/A 36799903
    101 7pnk:N (3.61) BS16 CHL N/A GO:0009765 ... N/A 36799903
    102 7pnk:N (3.61) BS17 CLA N/A GO:0009765 ... N/A 36799903
    103 7pnk:S (3.61) BS01 CLA N/A GO:0009765 ... N/A 36799903
    104 7pnk:S (3.61) BS02 LMK N/A GO:0009765 ... N/A 36799903
    105 7pnk:S (3.61) BS03 CHL N/A GO:0009765 ... N/A 36799903
    106 7pnk:S (3.61) BS04 CHL N/A GO:0009765 ... N/A 36799903
    107 7pnk:S (3.61) BS05 CLA N/A GO:0009765 ... N/A 36799903
    108 7pnk:S (3.61) BS06 CLA N/A GO:0009765 ... N/A 36799903
    109 7pnk:S (3.61) BS07 CLA N/A GO:0009765 ... N/A 36799903
    110 7pnk:S (3.61) BS08 CLA N/A GO:0009765 ... N/A 36799903
    111 7pnk:S (3.61) BS09 CHL N/A GO:0009765 ... N/A 36799903
    112 7pnk:S (3.61) BS10 CHL N/A GO:0009765 ... N/A 36799903
    113 7pnk:S (3.61) BS11 CHL N/A GO:0009765 ... N/A 36799903
    114 7pnk:S (3.61) BS12 CLA N/A GO:0009765 ... N/A 36799903
    115 7pnk:S (3.61) BS13 CLA N/A GO:0009765 ... N/A 36799903
    116 7pnk:S (3.61) BS14 CLA N/A GO:0009765 ... N/A 36799903
    117 7pnk:S (3.61) BS15 CLA N/A GO:0009765 ... N/A 36799903
    118 7pnk:S (3.61) BS16 CLA N/A GO:0009765 ... N/A 36799903
    119 7pnk:S (3.61) BS17 CLA N/A GO:0009765 ... N/A 36799903
    120 7pnk:S (3.61) BS18 CLA N/A GO:0009765 ... N/A 36799903
    121 7pnk:X (3.61) BS01 CLA N/A GO:0009523 ... N/A 36799903
    122 7pnk:Y (3.61) BS01 CHL N/A GO:0009765 ... N/A 36799903
    123 7pnk:Y (3.61) BS02 CHL N/A GO:0009765 ... N/A 36799903
    124 7pnk:Y (3.61) BS03 CLA N/A GO:0009765 ... N/A 36799903
    125 7pnk:Y (3.61) BS04 CLA N/A GO:0009765 ... N/A 36799903
    126 7pnk:Y (3.61) BS05 CHL N/A GO:0009765 ... N/A 36799903
    127 7pnk:Y (3.61) BS06 CHL N/A GO:0009765 ... N/A 36799903
    128 7pnk:Y (3.61) BS07 CHL N/A GO:0009765 ... N/A 36799903
    129 7pnk:Y (3.61) BS08 CLA N/A GO:0009765 ... N/A 36799903
    130 7pnk:Y (3.61) BS09 CHL N/A GO:0009765 ... N/A 36799903
    131 7pnk:Y (3.61) BS10 CLA N/A GO:0009765 ... N/A 36799903
    132 7pnk:Y (3.61) BS11 CLA N/A GO:0009765 ... N/A 36799903
    133 7pnk:Y (3.61) BS12 CLA N/A GO:0009765 ... N/A 36799903
    134 7pnk:Y (3.61) BS13 CLA N/A GO:0009765 ... N/A 36799903
    135 7pnk:Y (3.61) BS14 CLA N/A GO:0009765 ... N/A 36799903
    136 7pnk:Z (3.61) BS01 CLA ? GO:0009523 ... D0FXZ2 36799903
    137 7pnk:a (3.61) BS01 OEX 1.10.3.9 GO:0005506 ... D0FY08 36799903
    138 7pnk:a (3.61) BS02 FE2 1.10.3.9 GO:0005506 ... D0FY08 36799903
    139 7pnk:a (3.61) BS03 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    140 7pnk:a (3.61) BS04 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    141 7pnk:a (3.61) BS05 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    142 7pnk:a (3.61) BS06 PHO 1.10.3.9 GO:0005506 ... D0FY08 36799903
    143 7pnk:a (3.61) BS07 PHO 1.10.3.9 GO:0005506 ... D0FY08 36799903
    144 7pnk:a (3.61) BS08 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    145 7pnk:a (3.61) BS09 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    146 7pnk:a (3.61) BS10 BCT 1.10.3.9 GO:0005506 ... D0FY08 36799903
    147 7pnk:b (3.61) BS01 peptide ? GO:0009507 ... A0A1C8XRM6 36799903
    148 7pnk:b (3.61) BS02 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    149 7pnk:b (3.61) BS03 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    150 7pnk:b (3.61) BS04 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    151 7pnk:b (3.61) BS05 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    152 7pnk:b (3.61) BS06 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    153 7pnk:b (3.61) BS07 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    154 7pnk:b (3.61) BS08 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    155 7pnk:b (3.61) BS09 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    156 7pnk:b (3.61) BS10 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    157 7pnk:b (3.61) BS11 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    158 7pnk:b (3.61) BS12 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    159 7pnk:b (3.61) BS13 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    160 7pnk:b (3.61) BS14 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    161 7pnk:b (3.61) BS15 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    162 7pnk:b (3.61) BS16 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    163 7pnk:b (3.61) BS17 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    164 7pnk:b (3.61) BS18 C7Z ? GO:0009507 ... A0A1C8XRM6 36799903
    165 7pnk:c (3.61) BS01 OEX ? GO:0005737 ... D0FXY3 36799903
    166 7pnk:c (3.61) BS02 CLA ? GO:0005737 ... D0FXY3 36799903
    167 7pnk:c (3.61) BS03 CLA ? GO:0005737 ... D0FXY3 36799903
    168 7pnk:c (3.61) BS04 CLA ? GO:0005737 ... D0FXY3 36799903
    169 7pnk:c (3.61) BS05 CLA ? GO:0005737 ... D0FXY3 36799903
    170 7pnk:c (3.61) BS06 CLA ? GO:0005737 ... D0FXY3 36799903
    171 7pnk:c (3.61) BS07 CLA ? GO:0005737 ... D0FXY3 36799903
    172 7pnk:c (3.61) BS08 CLA ? GO:0005737 ... D0FXY3 36799903
    173 7pnk:c (3.61) BS09 CLA ? GO:0005737 ... D0FXY3 36799903
    174 7pnk:c (3.61) BS10 CLA ? GO:0005737 ... D0FXY3 36799903
    175 7pnk:c (3.61) BS11 CLA ? GO:0005737 ... D0FXY3 36799903
    176 7pnk:c (3.61) BS12 CLA ? GO:0005737 ... D0FXY3 36799903
    177 7pnk:c (3.61) BS13 CLA ? GO:0005737 ... D0FXY3 36799903
    178 7pnk:c (3.61) BS14 CLA ? GO:0005737 ... D0FXY3 36799903
    179 7pnk:c (3.61) BS15 LMK ? GO:0005737 ... D0FXY3 36799903
    180 7pnk:d (3.61) BS01 peptide 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    181 7pnk:d (3.61) BS02 FE2 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    182 7pnk:d (3.61) BS03 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    183 7pnk:d (3.61) BS04 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    184 7pnk:d (3.61) BS05 PHO 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    185 7pnk:d (3.61) BS06 PHO 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    186 7pnk:d (3.61) BS07 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    187 7pnk:d (3.61) BS08 BCT 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    188 7pnk:d (3.61) BS09 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    189 7pnk:d (3.61) BS10 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    190 7pnk:e (3.61) BS01 peptide ? GO:0005506 ... D0FY01 36799903
    191 7pnk:e (3.61) BS02 HEM ? GO:0005506 ... D0FY01 36799903
    192 7pnk:f (3.61) BS01 HEM ? GO:0009523 ... A0A1C8XRP4 36799903
    193 7pnk:h (3.61) BS01 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    194 7pnk:h (3.61) BS02 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    195 7pnk:h (3.61) BS03 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    196 7pnk:h (3.61) BS04 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    197 7pnk:h (3.61) BS05 RRX ? GO:0009523 ... A0A1C8XRP3 36799903
    198 7pnk:i (3.61) BS01 CLA ? GO:0005737 ... D0FXX5 36799903
    199 7pnk:i (3.61) BS02 4RF ? GO:0005737 ... D0FXX5 36799903
    200 7pnk:k (3.61) BS01 CLA ? GO:0009523 ... D0FXX2 36799903

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218