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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 312 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7oui:1 (2.79) BS01 CHL ? GO:0005783 ... Q39142 34330992
    2 7oui:1 (2.79) BS02 CHL ? GO:0005783 ... Q39142 34330992
    3 7oui:2 (2.79) BS01 CHL ? GO:0005515 ... Q9S7M0 34330992
    4 7oui:2 (2.79) BS02 CLA ? GO:0005515 ... Q9S7M0 34330992
    5 7oui:2 (2.79) BS03 CHL ? GO:0005515 ... Q9S7M0 34330992
    6 7oui:2 (2.79) BS04 CLA ? GO:0005515 ... Q9S7M0 34330992
    7 7oui:4 (2.79) BS01 CLA ? GO:0009765 ... Q9LMQ2 34330992
    8 7oui:5 (2.79) BS01 CHL ? GO:0005783 ... Q39142 34330992
    9 7oui:5 (2.79) BS02 CHL ? GO:0005783 ... Q39142 34330992
    10 7oui:6 (2.79) BS01 CHL ? GO:0005515 ... Q9S7M0 34330992
    11 7oui:6 (2.79) BS02 CLA ? GO:0005515 ... Q9S7M0 34330992
    12 7oui:6 (2.79) BS03 CHL ? GO:0005515 ... Q9S7M0 34330992
    13 7oui:6 (2.79) BS04 CLA ? GO:0005515 ... Q9S7M0 34330992
    14 7oui:8 (2.79) BS01 CLA ? GO:0009765 ... Q9LMQ2 34330992
    15 7oui:A (2.79) BS01 peptide 1.10.3.9 GO:0003729 ... P83755 34330992
    16 7oui:A (2.79) BS02 CLA 1.10.3.9 GO:0003729 ... P83755 34330992
    17 7oui:A (2.79) BS03 CLA 1.10.3.9 GO:0003729 ... P83755 34330992
    18 7oui:A (2.79) BS04 PHO 1.10.3.9 GO:0003729 ... P83755 34330992
    19 7oui:A (2.79) BS05 PHO 1.10.3.9 GO:0003729 ... P83755 34330992
    20 7oui:A (2.79) BS06 CLA 1.10.3.9 GO:0003729 ... P83755 34330992
    21 7oui:A (2.79) BS07 AJP 1.10.3.9 GO:0003729 ... P83755 34330992
    22 7oui:A (2.79) BS08 BCT 1.10.3.9 GO:0003729 ... P83755 34330992
    23 7oui:A (2.79) BS09 FE2 1.10.3.9 GO:0003729 ... P83755 34330992
    24 7oui:A (2.79) BS10 CA 1.10.3.9 GO:0003729 ... P83755 34330992
    25 7oui:A (2.79) BS11 CLA 1.10.3.9 GO:0003729 ... P83755 34330992
    26 7oui:A (2.79) BS12 CLA 1.10.3.9 GO:0003729 ... P83755 34330992
    27 7oui:A (2.79) BS13 AJP 1.10.3.9 GO:0003729 ... P83755 34330992
    28 7oui:B (2.79) BS01 peptide ? GO:0003729 ... P56777 34330992
    29 7oui:B (2.79) BS02 CLA ? GO:0003729 ... P56777 34330992
    30 7oui:B (2.79) BS03 CLA ? GO:0003729 ... P56777 34330992
    31 7oui:B (2.79) BS04 CLA ? GO:0003729 ... P56777 34330992
    32 7oui:B (2.79) BS05 CLA ? GO:0003729 ... P56777 34330992
    33 7oui:B (2.79) BS06 CLA ? GO:0003729 ... P56777 34330992
    34 7oui:B (2.79) BS07 CLA ? GO:0003729 ... P56777 34330992
    35 7oui:B (2.79) BS08 CLA ? GO:0003729 ... P56777 34330992
    36 7oui:B (2.79) BS09 CLA ? GO:0003729 ... P56777 34330992
    37 7oui:B (2.79) BS10 CLA ? GO:0003729 ... P56777 34330992
    38 7oui:B (2.79) BS11 CLA ? GO:0003729 ... P56777 34330992
    39 7oui:B (2.79) BS12 CLA ? GO:0003729 ... P56777 34330992
    40 7oui:B (2.79) BS13 CLA ? GO:0003729 ... P56777 34330992
    41 7oui:B (2.79) BS14 CLA ? GO:0003729 ... P56777 34330992
    42 7oui:B (2.79) BS15 CLA ? GO:0003729 ... P56777 34330992
    43 7oui:B (2.79) BS16 CLA ? GO:0003729 ... P56777 34330992
    44 7oui:B (2.79) BS17 CLA ? GO:0003729 ... P56777 34330992
    45 7oui:B (2.79) BS18 AJP ? GO:0003729 ... P56777 34330992
    46 7oui:B (2.79) BS19 CLA ? GO:0003729 ... P56777 34330992
    47 7oui:B (2.79) BS20 CLA ? GO:0003729 ... P56777 34330992
    48 7oui:C (2.79) BS01 CLA ? GO:0003729 ... P56778 34330992
    49 7oui:C (2.79) BS02 CLA ? GO:0003729 ... P56778 34330992
    50 7oui:C (2.79) BS03 CLA ? GO:0003729 ... P56778 34330992
    51 7oui:C (2.79) BS04 CLA ? GO:0003729 ... P56778 34330992
    52 7oui:C (2.79) BS05 CLA ? GO:0003729 ... P56778 34330992
    53 7oui:C (2.79) BS06 CLA ? GO:0003729 ... P56778 34330992
    54 7oui:C (2.79) BS07 CLA ? GO:0003729 ... P56778 34330992
    55 7oui:C (2.79) BS08 CLA ? GO:0003729 ... P56778 34330992
    56 7oui:C (2.79) BS09 CLA ? GO:0003729 ... P56778 34330992
    57 7oui:C (2.79) BS10 CLA ? GO:0003729 ... P56778 34330992
    58 7oui:C (2.79) BS11 CLA ? GO:0003729 ... P56778 34330992
    59 7oui:C (2.79) BS12 CLA ? GO:0003729 ... P56778 34330992
    60 7oui:C (2.79) BS13 CLA ? GO:0003729 ... P56778 34330992
    61 7oui:D (2.79) BS01 peptide 1.10.3.9 GO:0003729 ... P56761 34330992
    62 7oui:D (2.79) BS02 peptide 1.10.3.9 GO:0003729 ... P56761 34330992
    63 7oui:D (2.79) BS03 CLA 1.10.3.9 GO:0003729 ... P56761 34330992
    64 7oui:D (2.79) BS04 PHO 1.10.3.9 GO:0003729 ... P56761 34330992
    65 7oui:D (2.79) BS05 PHO 1.10.3.9 GO:0003729 ... P56761 34330992
    66 7oui:D (2.79) BS06 BCT 1.10.3.9 GO:0003729 ... P56761 34330992
    67 7oui:D (2.79) BS07 FE2 1.10.3.9 GO:0003729 ... P56761 34330992
    68 7oui:D (2.79) BS08 CLA 1.10.3.9 GO:0003729 ... P56761 34330992
    69 7oui:D (2.79) BS09 CLA 1.10.3.9 GO:0003729 ... P56761 34330992
    70 7oui:D (2.79) BS10 CLA 1.10.3.9 GO:0003729 ... P56761 34330992
    71 7oui:D (2.79) BS11 CLA 1.10.3.9 GO:0003729 ... P56761 34330992
    72 7oui:E (2.79) BS01 peptide ? GO:0005506 ... P56779 34330992
    73 7oui:E (2.79) BS02 peptide ? GO:0005506 ... P56779 34330992
    74 7oui:E (2.79) BS03 HEM ? GO:0005506 ... P56779 34330992
    75 7oui:G (2.79) BS01 CHL ? GO:0009765 ... P04778 34330992
    76 7oui:G (2.79) BS02 CLA ? GO:0009765 ... P04778 34330992
    77 7oui:G (2.79) BS03 CLA ? GO:0009765 ... P04778 34330992
    78 7oui:G (2.79) BS04 CLA ? GO:0009765 ... P04778 34330992
    79 7oui:G (2.79) BS05 CHL ? GO:0009765 ... P04778 34330992
    80 7oui:G (2.79) BS06 CHL ? GO:0009765 ... P04778 34330992
    81 7oui:G (2.79) BS07 CHL ? GO:0009765 ... P04778 34330992
    82 7oui:G (2.79) BS08 CHL ? GO:0009765 ... P04778 34330992
    83 7oui:G (2.79) BS09 CHL ? GO:0009765 ... P04778 34330992
    84 7oui:G (2.79) BS10 CLA ? GO:0009765 ... P04778 34330992
    85 7oui:G (2.79) BS11 CLA ? GO:0009765 ... P04778 34330992
    86 7oui:G (2.79) BS12 CLA ? GO:0009765 ... P04778 34330992
    87 7oui:G (2.79) BS13 CLA ? GO:0009765 ... P04778 34330992
    88 7oui:G (2.79) BS14 AJP ? GO:0009765 ... P04778 34330992
    89 7oui:G (2.79) BS15 CHL ? GO:0009765 ... P04778 34330992
    90 7oui:H (2.79) BS01 CLA ? GO:0003729 ... P56780 34330992
    91 7oui:H (2.79) BS02 CLA ? GO:0003729 ... P56780 34330992
    92 7oui:H (2.79) BS03 CLA ? GO:0003729 ... P56780 34330992
    93 7oui:I (2.79) BS01 CLA ? GO:0005737 ... P62100 34330992
    94 7oui:K (2.79) BS01 CLA ? GO:0009523 ... P56782 34330992
    95 7oui:K (2.79) BS02 CLA ? GO:0009523 ... P56782 34330992
    96 7oui:L (2.79) BS01 peptide ? GO:0005737 ... P60129 34330992
    97 7oui:M (2.79) BS01 peptide ? GO:0005737 ... P62109 34330992
    98 7oui:N (2.79) BS01 CHL ? GO:0009765 ... P04778 34330992
    99 7oui:N (2.79) BS02 CHL ? GO:0009765 ... P04778 34330992
    100 7oui:N (2.79) BS03 CLA ? GO:0009765 ... P04778 34330992
    101 7oui:N (2.79) BS04 CLA ? GO:0009765 ... P04778 34330992
    102 7oui:N (2.79) BS05 CHL ? GO:0009765 ... P04778 34330992
    103 7oui:N (2.79) BS06 CHL ? GO:0009765 ... P04778 34330992
    104 7oui:N (2.79) BS07 CHL ? GO:0009765 ... P04778 34330992
    105 7oui:N (2.79) BS08 CHL ? GO:0009765 ... P04778 34330992
    106 7oui:N (2.79) BS09 CHL ? GO:0009765 ... P04778 34330992
    107 7oui:N (2.79) BS10 CLA ? GO:0009765 ... P04778 34330992
    108 7oui:N (2.79) BS11 CLA ? GO:0009765 ... P04778 34330992
    109 7oui:N (2.79) BS12 CLA ? GO:0009765 ... P04778 34330992
    110 7oui:N (2.79) BS13 CLA ? GO:0009765 ... P04778 34330992
    111 7oui:N (2.79) BS14 AJP ? GO:0009765 ... P04778 34330992
    112 7oui:O (2.79) BS01 AJP ? GO:0009654 ... P23321 34330992
    113 7oui:R (2.79) BS01 CLA ? GO:0009765 ... Q07473 34330992
    114 7oui:R (2.79) BS02 CLA ? GO:0009765 ... Q07473 34330992
    115 7oui:R (2.79) BS03 CLA ? GO:0009765 ... Q07473 34330992
    116 7oui:R (2.79) BS04 CLA ? GO:0009765 ... Q07473 34330992
    117 7oui:R (2.79) BS05 CHL ? GO:0009765 ... Q07473 34330992
    118 7oui:R (2.79) BS06 CHL ? GO:0009765 ... Q07473 34330992
    119 7oui:R (2.79) BS07 CHL ? GO:0009765 ... Q07473 34330992
    120 7oui:R (2.79) BS08 CLA ? GO:0009765 ... Q07473 34330992
    121 7oui:R (2.79) BS09 CLA ? GO:0009765 ... Q07473 34330992
    122 7oui:R (2.79) BS10 CLA ? GO:0009765 ... Q07473 34330992
    123 7oui:R (2.79) BS11 CLA ? GO:0009765 ... Q07473 34330992
    124 7oui:R (2.79) BS12 CHL ? GO:0009765 ... Q07473 34330992
    125 7oui:R (2.79) BS13 CLA ? GO:0009765 ... Q07473 34330992
    126 7oui:R (2.79) BS14 CHL ? GO:0009765 ... Q07473 34330992
    127 7oui:S (2.79) BS01 CLA ? GO:0009765 ... Q9XF89 34330992
    128 7oui:S (2.79) BS02 CHL ? GO:0009765 ... Q9XF89 34330992
    129 7oui:S (2.79) BS03 CLA ? GO:0009765 ... Q9XF89 34330992
    130 7oui:S (2.79) BS04 CLA ? GO:0009765 ... Q9XF89 34330992
    131 7oui:S (2.79) BS05 CLA ? GO:0009765 ... Q9XF89 34330992
    132 7oui:S (2.79) BS06 CHL ? GO:0009765 ... Q9XF89 34330992
    133 7oui:S (2.79) BS07 CHL ? GO:0009765 ... Q9XF89 34330992
    134 7oui:S (2.79) BS08 CHL ? GO:0009765 ... Q9XF89 34330992
    135 7oui:S (2.79) BS09 CLA ? GO:0009765 ... Q9XF89 34330992
    136 7oui:S (2.79) BS10 CLA ? GO:0009765 ... Q9XF89 34330992
    137 7oui:S (2.79) BS11 CLA ? GO:0009765 ... Q9XF89 34330992
    138 7oui:S (2.79) BS12 CLA ? GO:0009765 ... Q9XF89 34330992
    139 7oui:S (2.79) BS13 CLA ? GO:0009765 ... Q9XF89 34330992
    140 7oui:S (2.79) BS14 CLA ? GO:0009765 ... Q9XF89 34330992
    141 7oui:S (2.79) BS15 AJP ? GO:0009765 ... Q9XF89 34330992
    142 7oui:S (2.79) BS16 CHL ? GO:0009765 ... Q9XF89 34330992
    143 7oui:W (2.79) BS01 CLA ? GO:0009507 ... Q39194 34330992
    144 7oui:X (2.79) BS01 CLA ? GO:0009523 ... A0A7G2E9B1 34330992
    145 7oui:Y (2.79) BS01 CLA ? GO:0009765 ... P04778 34330992
    146 7oui:Y (2.79) BS02 CHL ? GO:0009765 ... P04778 34330992
    147 7oui:Y (2.79) BS03 CHL ? GO:0009765 ... P04778 34330992
    148 7oui:Y (2.79) BS04 CLA ? GO:0009765 ... P04778 34330992
    149 7oui:Y (2.79) BS05 CLA ? GO:0009765 ... P04778 34330992
    150 7oui:Y (2.79) BS06 CLA ? GO:0009765 ... P04778 34330992
    151 7oui:Y (2.79) BS07 CHL ? GO:0009765 ... P04778 34330992
    152 7oui:Y (2.79) BS08 CHL ? GO:0009765 ... P04778 34330992
    153 7oui:Y (2.79) BS09 CHL ? GO:0009765 ... P04778 34330992
    154 7oui:Y (2.79) BS10 CHL ? GO:0009765 ... P04778 34330992
    155 7oui:Y (2.79) BS11 CHL ? GO:0009765 ... P04778 34330992
    156 7oui:Y (2.79) BS12 CLA ? GO:0009765 ... P04778 34330992
    157 7oui:Y (2.79) BS13 CLA ? GO:0009765 ... P04778 34330992
    158 7oui:Y (2.79) BS14 CLA ? GO:0009765 ... P04778 34330992
    159 7oui:Y (2.79) BS15 CLA ? GO:0009765 ... P04778 34330992
    160 7oui:Y (2.79) BS16 CLA ? GO:0009765 ... P04778 34330992
    161 7oui:Y (2.79) BS17 AJP ? GO:0009765 ... P04778 34330992
    162 7oui:Y (2.79) BS18 AJP ? GO:0009765 ... P04778 34330992
    163 7oui:Z (2.79) BS01 CLA ? GO:0003674 ... P56790 34330992
    164 7oui:a (2.79) BS01 peptide 1.10.3.9 GO:0003729 ... P83755 34330992
    165 7oui:a (2.79) BS02 AJP 1.10.3.9 GO:0003729 ... P83755 34330992
    166 7oui:a (2.79) BS03 CLA 1.10.3.9 GO:0003729 ... P83755 34330992
    167 7oui:a (2.79) BS04 CLA 1.10.3.9 GO:0003729 ... P83755 34330992
    168 7oui:a (2.79) BS05 PHO 1.10.3.9 GO:0003729 ... P83755 34330992
    169 7oui:a (2.79) BS06 PHO 1.10.3.9 GO:0003729 ... P83755 34330992
    170 7oui:a (2.79) BS07 CLA 1.10.3.9 GO:0003729 ... P83755 34330992
    171 7oui:a (2.79) BS08 AJP 1.10.3.9 GO:0003729 ... P83755 34330992
    172 7oui:a (2.79) BS09 BCT 1.10.3.9 GO:0003729 ... P83755 34330992
    173 7oui:a (2.79) BS10 FE2 1.10.3.9 GO:0003729 ... P83755 34330992
    174 7oui:a (2.79) BS11 CA 1.10.3.9 GO:0003729 ... P83755 34330992
    175 7oui:a (2.79) BS12 CLA 1.10.3.9 GO:0003729 ... P83755 34330992
    176 7oui:a (2.79) BS13 CLA 1.10.3.9 GO:0003729 ... P83755 34330992
    177 7oui:b (2.79) BS01 peptide ? GO:0003729 ... P56777 34330992
    178 7oui:b (2.79) BS02 CLA ? GO:0003729 ... P56777 34330992
    179 7oui:b (2.79) BS03 CLA ? GO:0003729 ... P56777 34330992
    180 7oui:b (2.79) BS04 CLA ? GO:0003729 ... P56777 34330992
    181 7oui:b (2.79) BS05 CLA ? GO:0003729 ... P56777 34330992
    182 7oui:b (2.79) BS06 CLA ? GO:0003729 ... P56777 34330992
    183 7oui:b (2.79) BS07 CLA ? GO:0003729 ... P56777 34330992
    184 7oui:b (2.79) BS08 CLA ? GO:0003729 ... P56777 34330992
    185 7oui:b (2.79) BS09 CLA ? GO:0003729 ... P56777 34330992
    186 7oui:b (2.79) BS10 CLA ? GO:0003729 ... P56777 34330992
    187 7oui:b (2.79) BS11 CLA ? GO:0003729 ... P56777 34330992
    188 7oui:b (2.79) BS12 CLA ? GO:0003729 ... P56777 34330992
    189 7oui:b (2.79) BS13 CLA ? GO:0003729 ... P56777 34330992
    190 7oui:b (2.79) BS14 CLA ? GO:0003729 ... P56777 34330992
    191 7oui:b (2.79) BS15 CLA ? GO:0003729 ... P56777 34330992
    192 7oui:b (2.79) BS16 CLA ? GO:0003729 ... P56777 34330992
    193 7oui:b (2.79) BS17 CLA ? GO:0003729 ... P56777 34330992
    194 7oui:b (2.79) BS18 AJP ? GO:0003729 ... P56777 34330992
    195 7oui:b (2.79) BS19 CLA ? GO:0003729 ... P56777 34330992
    196 7oui:b (2.79) BS20 CLA ? GO:0003729 ... P56777 34330992
    197 7oui:c (2.79) BS01 CLA ? GO:0003729 ... P56778 34330992
    198 7oui:c (2.79) BS02 CLA ? GO:0003729 ... P56778 34330992
    199 7oui:c (2.79) BS03 CLA ? GO:0003729 ... P56778 34330992
    200 7oui:c (2.79) BS04 CLA ? GO:0003729 ... P56778 34330992
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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