Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 111 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7czl:A (3.78) BS01 CLA 1.10.3.9 GO:0005506 ... P51765 33495333
    2 7czl:A (3.78) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 33495333
    3 7czl:A (3.78) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 33495333
    4 7czl:A (3.78) BS04 PHO 1.10.3.9 GO:0005506 ... P51765 33495333
    5 7czl:A (3.78) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 33495333
    6 7czl:A (3.78) BS06 BCT 1.10.3.9 GO:0005506 ... P51765 33495333
    7 7czl:A (3.78) BS07 CLA 1.10.3.9 GO:0005506 ... P51765 33495333
    8 7czl:A (3.78) BS08 PHO 1.10.3.9 GO:0005506 ... P51765 33495333
    9 7czl:B (3.78) BS01 CLA ? GO:0009521 ... D0VWR1 33495333
    10 7czl:B (3.78) BS02 CLA ? GO:0009521 ... D0VWR1 33495333
    11 7czl:B (3.78) BS03 CLA ? GO:0009521 ... D0VWR1 33495333
    12 7czl:B (3.78) BS04 CLA ? GO:0009521 ... D0VWR1 33495333
    13 7czl:B (3.78) BS05 CLA ? GO:0009521 ... D0VWR1 33495333
    14 7czl:B (3.78) BS06 CLA ? GO:0009521 ... D0VWR1 33495333
    15 7czl:B (3.78) BS07 CLA ? GO:0009521 ... D0VWR1 33495333
    16 7czl:B (3.78) BS08 CLA ? GO:0009521 ... D0VWR1 33495333
    17 7czl:B (3.78) BS09 CLA ? GO:0009521 ... D0VWR1 33495333
    18 7czl:B (3.78) BS10 CLA ? GO:0009521 ... D0VWR1 33495333
    19 7czl:B (3.78) BS11 CLA ? GO:0009521 ... D0VWR1 33495333
    20 7czl:B (3.78) BS12 CLA ? GO:0009521 ... D0VWR1 33495333
    21 7czl:B (3.78) BS13 CLA ? GO:0009521 ... D0VWR1 33495333
    22 7czl:B (3.78) BS14 CLA ? GO:0009521 ... D0VWR1 33495333
    23 7czl:B (3.78) BS15 CLA ? GO:0009521 ... D0VWR1 33495333
    24 7czl:B (3.78) BS16 CLA ? GO:0009521 ... D0VWR1 33495333
    25 7czl:C (3.78) BS01 CLA ? GO:0005737 ... D0VWR7 33495333
    26 7czl:C (3.78) BS02 CLA ? GO:0005737 ... D0VWR7 33495333
    27 7czl:C (3.78) BS03 CLA ? GO:0005737 ... D0VWR7 33495333
    28 7czl:C (3.78) BS04 CLA ? GO:0005737 ... D0VWR7 33495333
    29 7czl:C (3.78) BS05 CLA ? GO:0005737 ... D0VWR7 33495333
    30 7czl:C (3.78) BS06 CLA ? GO:0005737 ... D0VWR7 33495333
    31 7czl:C (3.78) BS07 CLA ? GO:0005737 ... D0VWR7 33495333
    32 7czl:C (3.78) BS08 CLA ? GO:0005737 ... D0VWR7 33495333
    33 7czl:C (3.78) BS09 CLA ? GO:0005737 ... D0VWR7 33495333
    34 7czl:C (3.78) BS10 CLA ? GO:0005737 ... D0VWR7 33495333
    35 7czl:C (3.78) BS11 CLA ? GO:0005737 ... D0VWR7 33495333
    36 7czl:C (3.78) BS12 CLA ? GO:0005737 ... D0VWR7 33495333
    37 7czl:C (3.78) BS13 CLA ? GO:0005737 ... D0VWR7 33495333
    38 7czl:D (3.78) BS01 CLA 1.10.3.9 GO:0009523 ... D0VWR8 33495333
    39 7czl:D (3.78) BS02 PHO 1.10.3.9 GO:0009523 ... D0VWR8 33495333
    40 7czl:D (3.78) BS03 BCT 1.10.3.9 GO:0009523 ... D0VWR8 33495333
    41 7czl:D (3.78) BS04 CLA 1.10.3.9 GO:0009523 ... D0VWR8 33495333
    42 7czl:D (3.78) BS05 FE2 1.10.3.9 GO:0009523 ... D0VWR8 33495333
    43 7czl:D (3.78) BS06 PHO 1.10.3.9 GO:0009523 ... D0VWR8 33495333
    44 7czl:D (3.78) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 33495333
    45 7czl:D (3.78) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 33495333
    46 7czl:E (3.78) BS01 HEM ? GO:0009523 ... P12238 33495333
    47 7czl:F (3.78) BS01 HEM ? GO:0009523 ... P12239 33495333
    48 7czl:H (3.78) BS01 CLA ? GO:0009523 ... P19052 33495333
    49 7czl:H (3.78) BS02 CLA ? GO:0009523 ... P19052 33495333
    50 7czl:I (3.78) BS01 CLA ? GO:0009523 ... P12240 33495333
    51 7czl:K (3.78) BS01 peptide ? GO:0005737 ... P19054 33495333
    52 7czl:K (3.78) BS02 CLA ? GO:0005737 ... P19054 33495333
    53 7czl:L (3.78) BS01 CLA ? GO:0005737 ... P12241 33495333
    54 7czl:a (3.78) BS01 CLA 1.10.3.9 GO:0005506 ... P51765 33495333
    55 7czl:a (3.78) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 33495333
    56 7czl:a (3.78) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 33495333
    57 7czl:a (3.78) BS04 PHO 1.10.3.9 GO:0005506 ... P51765 33495333
    58 7czl:a (3.78) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 33495333
    59 7czl:a (3.78) BS06 BCT 1.10.3.9 GO:0005506 ... P51765 33495333
    60 7czl:a (3.78) BS07 PHO 1.10.3.9 GO:0005506 ... P51765 33495333
    61 7czl:a (3.78) BS08 CLA 1.10.3.9 GO:0005506 ... P51765 33495333
    62 7czl:b (3.78) BS01 CLA ? GO:0009521 ... D0VWR1 33495333
    63 7czl:b (3.78) BS02 CLA ? GO:0009521 ... D0VWR1 33495333
    64 7czl:b (3.78) BS03 CLA ? GO:0009521 ... D0VWR1 33495333
    65 7czl:b (3.78) BS04 CLA ? GO:0009521 ... D0VWR1 33495333
    66 7czl:b (3.78) BS05 CLA ? GO:0009521 ... D0VWR1 33495333
    67 7czl:b (3.78) BS06 CLA ? GO:0009521 ... D0VWR1 33495333
    68 7czl:b (3.78) BS07 CLA ? GO:0009521 ... D0VWR1 33495333
    69 7czl:b (3.78) BS08 CLA ? GO:0009521 ... D0VWR1 33495333
    70 7czl:b (3.78) BS09 CLA ? GO:0009521 ... D0VWR1 33495333
    71 7czl:b (3.78) BS10 CLA ? GO:0009521 ... D0VWR1 33495333
    72 7czl:b (3.78) BS11 CLA ? GO:0009521 ... D0VWR1 33495333
    73 7czl:b (3.78) BS12 CLA ? GO:0009521 ... D0VWR1 33495333
    74 7czl:b (3.78) BS13 CLA ? GO:0009521 ... D0VWR1 33495333
    75 7czl:b (3.78) BS14 CLA ? GO:0009521 ... D0VWR1 33495333
    76 7czl:b (3.78) BS15 CLA ? GO:0009521 ... D0VWR1 33495333
    77 7czl:b (3.78) BS16 CLA ? GO:0009521 ... D0VWR1 33495333
    78 7czl:c (3.78) BS01 CLA ? GO:0005737 ... D0VWR7 33495333
    79 7czl:c (3.78) BS02 CLA ? GO:0005737 ... D0VWR7 33495333
    80 7czl:c (3.78) BS03 CLA ? GO:0005737 ... D0VWR7 33495333
    81 7czl:c (3.78) BS04 CLA ? GO:0005737 ... D0VWR7 33495333
    82 7czl:c (3.78) BS05 CLA ? GO:0005737 ... D0VWR7 33495333
    83 7czl:c (3.78) BS06 CLA ? GO:0005737 ... D0VWR7 33495333
    84 7czl:c (3.78) BS07 CLA ? GO:0005737 ... D0VWR7 33495333
    85 7czl:c (3.78) BS08 CLA ? GO:0005737 ... D0VWR7 33495333
    86 7czl:c (3.78) BS09 CLA ? GO:0005737 ... D0VWR7 33495333
    87 7czl:c (3.78) BS10 CLA ? GO:0005737 ... D0VWR7 33495333
    88 7czl:c (3.78) BS11 CLA ? GO:0005737 ... D0VWR7 33495333
    89 7czl:c (3.78) BS12 CLA ? GO:0005737 ... D0VWR7 33495333
    90 7czl:c (3.78) BS13 CLA ? GO:0005737 ... D0VWR7 33495333
    91 7czl:d (3.78) BS01 peptide 1.10.3.9 GO:0009523 ... D0VWR8 33495333
    92 7czl:d (3.78) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 33495333
    93 7czl:d (3.78) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 33495333
    94 7czl:d (3.78) BS04 PHO 1.10.3.9 GO:0009523 ... D0VWR8 33495333
    95 7czl:d (3.78) BS05 BCT 1.10.3.9 GO:0009523 ... D0VWR8 33495333
    96 7czl:d (3.78) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 33495333
    97 7czl:d (3.78) BS07 FE2 1.10.3.9 GO:0009523 ... D0VWR8 33495333
    98 7czl:d (3.78) BS08 PHO 1.10.3.9 GO:0009523 ... D0VWR8 33495333
    99 7czl:d (3.78) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 33495333
    100 7czl:d (3.78) BS10 CLA 1.10.3.9 GO:0009523 ... D0VWR8 33495333
    101 7czl:e (3.78) BS01 peptide ? GO:0009523 ... P12238 33495333
    102 7czl:e (3.78) BS02 HEM ? GO:0009523 ... P12238 33495333
    103 7czl:h (3.78) BS01 CLA ? GO:0009523 ... P19052 33495333
    104 7czl:h (3.78) BS02 CLA ? GO:0009523 ... P19052 33495333
    105 7czl:h (3.78) BS03 CLA ? GO:0009523 ... P19052 33495333
    106 7czl:i (3.78) BS01 CLA ? GO:0009523 ... P12240 33495333
    107 7czl:i (3.78) BS02 CLA ? GO:0009523 ... P12240 33495333
    108 7czl:k (3.78) BS01 peptide ? GO:0005737 ... P19054 33495333
    109 7czl:k (3.78) BS02 CLA ? GO:0005737 ... P19054 33495333
    110 7czl:l (3.78) BS01 CLA ? GO:0005737 ... P12241 33495333
    111 7czl:z (3.78) BS01 peptide ? GO:0009523 ... D0VWR5 33495333
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417