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BioLiP Library
Download all results in tab-seperated text for 62 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7am2:A (3.4) BS01 rna ? GO:0003735 ... E9ADK5 33168716
    2 7am2:Aa (3.4) BS01 rna ? N/A Q4Q183 33168716
    3 7am2:Ab (3.4) BS01 rna ? GO:0003735 ... Q4Q6A7 33168716
    4 7am2:Ad (3.4) BS01 rna ? N/A Q4QIB3 33168716
    5 7am2:Ae (3.4) BS01 rna ? N/A E9ACG2 33168716
    6 7am2:Af (3.4) BS01 rna ? N/A Q4QJB6 33168716
    7 7am2:Ag (3.4) BS01 rna ? N/A Q4Q829 33168716
    8 7am2:Aj (3.4) BS01 rna ? N/A Q4Q728 33168716
    9 7am2:Al (3.4) BS01 rna ? N/A Q4Q1C8 33168716
    10 7am2:Am (3.4) BS01 rna ? GO:0003723 ... Q4QC22 33168716
    11 7am2:Ar (3.4) BS01 rna ? N/A Q4Q712 33168716
    12 7am2:As (3.4) BS01 rna ? N/A E9ABZ5 33168716
    13 7am2:At (3.4) BS01 rna ? GO:0005737 ... Q4Q4L5 33168716
    14 7am2:Au (3.4) BS01 rna ? N/A Q4Q8J6 33168716
    15 7am2:Aw (3.4) BS01 rna ? N/A E9AD00 33168716
    16 7am2:Ax (3.4) BS01 rna ? GO:0046872 ... Q4Q7T1 33168716
    17 7am2:Az (3.4) BS01 rna ? N/A Q4Q4D9 33168716
    18 7am2:B (3.4) BS01 rna ? GO:0003735 ... Q4QGU6 33168716
    19 7am2:BB (3.4) BS01 rna ? N/A Q4Q4D6 33168716
    20 7am2:BF (3.4) BS01 rna ? N/A Q4QIQ1 33168716
    21 7am2:BG (3.4) BS01 rna ? GO:0005856 ... A0A504WW14 33168716
    22 7am2:BH (3.4) BS01 rna 5.2.1.8 GO:0000413 ... Q4QBK2 33168716
    23 7am2:BK (3.4) BS01 rna ? N/A E9AD80 33168716
    24 7am2:BN (3.4) BS01 rna ? N/A Q4QAP7 33168716
    25 7am2:BO (3.4) BS01 rna ? GO:0003735 ... Q4Q2G1 33168716
    26 7am2:BP (3.4) BS01 rna ? N/A Q4QGE0 33168716
    27 7am2:BQ (3.4) BS01 rna ? N/A Q4QBK0 33168716
    28 7am2:BR (3.4) BS01 rna ? N/A A0A504XZ90 33168716
    29 7am2:BS (3.4) BS01 rna ? GO:0005634 ... Q4Q7K0 33168716
    30 7am2:BT (3.4) BS01 rna ? GO:0003924 ... E9AFZ4 33168716
    31 7am2:BU (3.4) BS01 rna ? GO:0005525 ... Q4Q9G4 33168716
    32 7am2:BU (3.4) BS02 GTP ? GO:0005525 ... Q4Q9G4 33168716
    33 7am2:BV (3.4) BS01 rna ? GO:0005525 ... Q4Q4X0 33168716
    34 7am2:BW (3.4) BS01 rna ? GO:0003676 ... Q4QHU1 33168716
    35 7am2:BW (3.4) BS02 rna ? GO:0003676 ... Q4QHU1 33168716
    36 7am2:BW (3.4) BS03 ATP ? GO:0003676 ... Q4QHU1 33168716
    37 7am2:BZ (3.4) BS01 rna ? GO:0001522 ... E9AC17 33168716
    38 7am2:BZ (3.4) BS02 rna ? GO:0001522 ... E9AC17 33168716
    39 7am2:BZ (3.4) BS03 rna ? GO:0001522 ... E9AC17 33168716
    40 7am2:C (3.4) BS01 rna ? GO:0005737 ... Q4QIE5 33168716
    41 7am2:CA (3.4) BS01 rna ? GO:0001522 ... Q4QGU5 33168716
    42 7am2:CA (3.4) BS02 rna ? GO:0001522 ... Q4QGU5 33168716
    43 7am2:CB (3.4) BS01 rna 2.7.7.52 GO:0016772 ... Q9NE59 33168716
    44 7am2:E (3.4) BS01 rna ? GO:0003735 ... E9ACT9 33168716
    45 7am2:F (3.4) BS01 rna ? GO:0003729 ... Q4Q2H6 33168716
    46 7am2:G (3.4) BS01 rna ? GO:0003735 ... Q4QF19 33168716
    47 7am2:I (3.4) BS01 rna ? GO:0003735 ... Q4QF04 33168716
    48 7am2:J (3.4) BS01 rna ? GO:0005737 ... Q4QCY7 33168716
    49 7am2:K (3.4) BS01 rna ? GO:0003735 ... Q4Q192 33168716
    50 7am2:L (3.4) BS01 rna ? GO:0003723 ... Q4QFQ5 33168716
    51 7am2:M (3.4) BS01 rna ? GO:0003735 ... Q4QBR0 33168716
    52 7am2:N (3.4) BS01 rna ? GO:0003735 ... Q4QA05 33168716
    53 7am2:O (3.4) BS01 rna ? GO:0003723 ... Q4Q9S7 33168716
    54 7am2:Q (3.4) BS01 rna ? GO:0003735 ... Q4Q719 33168716
    55 7am2:R (3.4) BS01 rna ? GO:0003735 ... Q9XZY7 33168716
    56 7am2:S (3.4) BS01 rna ? GO:0016020 ... Q9U0Z7 33168716
    57 7am2:T (3.4) BS01 rna ? GO:0005634 ... Q4Q2W9 33168716
    58 7am2:U2 (3.4) BS01 rna N/A GO:0050825 ... N/A 33168716
    59 7am2:U5 (3.4) BS01 rna N/A GO:0050825 ... N/A 33168716
    60 7am2:UA (3.4) BS01 rna N/A GO:0050825 ... N/A 33168716
    61 7am2:V (3.4) BS01 rna ? N/A Q4QCK6 33168716
    62 7am2:Z (3.4) BS01 rna ? N/A Q4Q152 33168716
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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