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BioLiP
Download all results in tab-seperated text for 123 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6dho:A (2.07) BS01 FE2 1.10.3.9 GO:0005506 ... P0A444 30405241
    2 6dho:A (2.07) BS02 CLA 1.10.3.9 GO:0005506 ... P0A444 30405241
    3 6dho:A (2.07) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 30405241
    4 6dho:A (2.07) BS04 PHO 1.10.3.9 GO:0005506 ... P0A444 30405241
    5 6dho:A (2.07) BS05 PHO 1.10.3.9 GO:0005506 ... P0A444 30405241
    6 6dho:A (2.07) BS06 CLA 1.10.3.9 GO:0005506 ... P0A444 30405241
    7 6dho:A (2.07) BS07 OEX 1.10.3.9 GO:0005506 ... P0A444 30405241
    8 6dho:A (2.07) BS08 OEY 1.10.3.9 GO:0005506 ... P0A444 30405241
    9 6dho:A (2.07) BS09 BCT 1.10.3.9 GO:0005506 ... P0A444 30405241
    10 6dho:A (2.07) BS10 CLA 1.10.3.9 GO:0005506 ... P0A444 30405241
    11 6dho:A (2.07) BS11 CLA 1.10.3.9 GO:0005506 ... P0A444 30405241
    12 6dho:B (2.07) BS01 CLA ? GO:0009521 ... Q8DIQ1 30405241
    13 6dho:B (2.07) BS02 CLA ? GO:0009521 ... Q8DIQ1 30405241
    14 6dho:B (2.07) BS03 CLA ? GO:0009521 ... Q8DIQ1 30405241
    15 6dho:B (2.07) BS04 CLA ? GO:0009521 ... Q8DIQ1 30405241
    16 6dho:B (2.07) BS05 CLA ? GO:0009521 ... Q8DIQ1 30405241
    17 6dho:B (2.07) BS06 CLA ? GO:0009521 ... Q8DIQ1 30405241
    18 6dho:B (2.07) BS07 CLA ? GO:0009521 ... Q8DIQ1 30405241
    19 6dho:B (2.07) BS08 CLA ? GO:0009521 ... Q8DIQ1 30405241
    20 6dho:B (2.07) BS09 CLA ? GO:0009521 ... Q8DIQ1 30405241
    21 6dho:B (2.07) BS10 CLA ? GO:0009521 ... Q8DIQ1 30405241
    22 6dho:B (2.07) BS11 CLA ? GO:0009521 ... Q8DIQ1 30405241
    23 6dho:B (2.07) BS12 CLA ? GO:0009521 ... Q8DIQ1 30405241
    24 6dho:B (2.07) BS13 CLA ? GO:0009521 ... Q8DIQ1 30405241
    25 6dho:B (2.07) BS14 CLA ? GO:0009521 ... Q8DIQ1 30405241
    26 6dho:B (2.07) BS15 CLA ? GO:0009521 ... Q8DIQ1 30405241
    27 6dho:B (2.07) BS16 CLA ? GO:0009521 ... Q8DIQ1 30405241
    28 6dho:C (2.07) BS01 OEX ? GO:0005737 ... Q8DIF8 30405241
    29 6dho:C (2.07) BS02 OEY ? GO:0005737 ... Q8DIF8 30405241
    30 6dho:C (2.07) BS03 CLA ? GO:0005737 ... Q8DIF8 30405241
    31 6dho:C (2.07) BS04 CLA ? GO:0005737 ... Q8DIF8 30405241
    32 6dho:C (2.07) BS05 CLA ? GO:0005737 ... Q8DIF8 30405241
    33 6dho:C (2.07) BS06 CLA ? GO:0005737 ... Q8DIF8 30405241
    34 6dho:C (2.07) BS07 CLA ? GO:0005737 ... Q8DIF8 30405241
    35 6dho:C (2.07) BS08 CLA ? GO:0005737 ... Q8DIF8 30405241
    36 6dho:C (2.07) BS09 CLA ? GO:0005737 ... Q8DIF8 30405241
    37 6dho:C (2.07) BS10 CLA ? GO:0005737 ... Q8DIF8 30405241
    38 6dho:C (2.07) BS11 CLA ? GO:0005737 ... Q8DIF8 30405241
    39 6dho:C (2.07) BS12 CLA ? GO:0005737 ... Q8DIF8 30405241
    40 6dho:C (2.07) BS13 CLA ? GO:0005737 ... Q8DIF8 30405241
    41 6dho:C (2.07) BS14 CLA ? GO:0005737 ... Q8DIF8 30405241
    42 6dho:C (2.07) BS15 CLA ? GO:0005737 ... Q8DIF8 30405241
    43 6dho:D (2.07) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 30405241
    44 6dho:D (2.07) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 30405241
    45 6dho:D (2.07) BS03 PHO 1.10.3.9 GO:0005506 ... Q8CM25 30405241
    46 6dho:D (2.07) BS04 PHO 1.10.3.9 GO:0005506 ... Q8CM25 30405241
    47 6dho:D (2.07) BS05 BCT 1.10.3.9 GO:0005506 ... Q8CM25 30405241
    48 6dho:D (2.07) BS06 CLA 1.10.3.9 GO:0005506 ... Q8CM25 30405241
    49 6dho:D (2.07) BS07 CLA 1.10.3.9 GO:0005506 ... Q8CM25 30405241
    50 6dho:D (2.07) BS08 CLA 1.10.3.9 GO:0005506 ... Q8CM25 30405241
    51 6dho:D (2.07) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 30405241
    52 6dho:E (2.07) BS01 HEM ? GO:0005506 ... Q8DIP0 30405241
    53 6dho:F (2.07) BS01 HEM ? GO:0009523 ... Q8DIN9 30405241
    54 6dho:H (2.07) BS01 CLA ? GO:0009523 ... Q8DJ43 30405241
    55 6dho:H (2.07) BS02 CLA ? GO:0009523 ... Q8DJ43 30405241
    56 6dho:H (2.07) BS03 CLA ? GO:0009523 ... Q8DJ43 30405241
    57 6dho:H (2.07) BS04 CLA ? GO:0009523 ... Q8DJ43 30405241
    58 6dho:I (2.07) BS01 CLA ? GO:0005737 ... Q8DJZ6 30405241
    59 6dho:K (2.07) BS01 peptide ? GO:0009523 ... Q9F1K9 30405241
    60 6dho:K (2.07) BS02 CLA ? GO:0009523 ... Q9F1K9 30405241
    61 6dho:K (2.07) BS03 CLA ? GO:0009523 ... Q9F1K9 30405241
    62 6dho:V (2.07) BS01 HEC ? GO:0005506 ... P0A386 30405241
    63 6dho:X (2.07) BS01 CLA ? GO:0009523 ... Q9F1R6 30405241
    64 6dho:Z (2.07) BS01 peptide ? GO:0009523 ... Q8DHJ2 30405241
    65 6dho:a (2.07) BS01 FE2 1.10.3.9 GO:0005506 ... P0A444 30405241
    66 6dho:a (2.07) BS02 BCT 1.10.3.9 GO:0005506 ... P0A444 30405241
    67 6dho:a (2.07) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 30405241
    68 6dho:a (2.07) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 30405241
    69 6dho:a (2.07) BS05 PHO 1.10.3.9 GO:0005506 ... P0A444 30405241
    70 6dho:a (2.07) BS06 CLA 1.10.3.9 GO:0005506 ... P0A444 30405241
    71 6dho:a (2.07) BS07 CLA 1.10.3.9 GO:0005506 ... P0A444 30405241
    72 6dho:a (2.07) BS08 OEX 1.10.3.9 GO:0005506 ... P0A444 30405241
    73 6dho:a (2.07) BS09 OEY 1.10.3.9 GO:0005506 ... P0A444 30405241
    74 6dho:a (2.07) BS10 PHO 1.10.3.9 GO:0005506 ... P0A444 30405241
    75 6dho:b (2.07) BS01 CLA ? GO:0009521 ... Q8DIQ1 30405241
    76 6dho:b (2.07) BS02 CLA ? GO:0009521 ... Q8DIQ1 30405241
    77 6dho:b (2.07) BS03 CLA ? GO:0009521 ... Q8DIQ1 30405241
    78 6dho:b (2.07) BS04 CLA ? GO:0009521 ... Q8DIQ1 30405241
    79 6dho:b (2.07) BS05 CLA ? GO:0009521 ... Q8DIQ1 30405241
    80 6dho:b (2.07) BS06 CLA ? GO:0009521 ... Q8DIQ1 30405241
    81 6dho:b (2.07) BS07 CLA ? GO:0009521 ... Q8DIQ1 30405241
    82 6dho:b (2.07) BS08 CLA ? GO:0009521 ... Q8DIQ1 30405241
    83 6dho:b (2.07) BS09 CLA ? GO:0009521 ... Q8DIQ1 30405241
    84 6dho:b (2.07) BS10 CLA ? GO:0009521 ... Q8DIQ1 30405241
    85 6dho:b (2.07) BS11 CLA ? GO:0009521 ... Q8DIQ1 30405241
    86 6dho:b (2.07) BS12 CLA ? GO:0009521 ... Q8DIQ1 30405241
    87 6dho:b (2.07) BS13 CLA ? GO:0009521 ... Q8DIQ1 30405241
    88 6dho:b (2.07) BS14 CLA ? GO:0009521 ... Q8DIQ1 30405241
    89 6dho:b (2.07) BS15 CLA ? GO:0009521 ... Q8DIQ1 30405241
    90 6dho:b (2.07) BS16 CLA ? GO:0009521 ... Q8DIQ1 30405241
    91 6dho:c (2.07) BS01 OEX ? GO:0005737 ... Q8DIF8 30405241
    92 6dho:c (2.07) BS02 OEY ? GO:0005737 ... Q8DIF8 30405241
    93 6dho:c (2.07) BS03 CLA ? GO:0005737 ... Q8DIF8 30405241
    94 6dho:c (2.07) BS04 CLA ? GO:0005737 ... Q8DIF8 30405241
    95 6dho:c (2.07) BS05 CLA ? GO:0005737 ... Q8DIF8 30405241
    96 6dho:c (2.07) BS06 CLA ? GO:0005737 ... Q8DIF8 30405241
    97 6dho:c (2.07) BS07 CLA ? GO:0005737 ... Q8DIF8 30405241
    98 6dho:c (2.07) BS08 CLA ? GO:0005737 ... Q8DIF8 30405241
    99 6dho:c (2.07) BS09 CLA ? GO:0005737 ... Q8DIF8 30405241
    100 6dho:c (2.07) BS10 CLA ? GO:0005737 ... Q8DIF8 30405241
    101 6dho:c (2.07) BS11 CLA ? GO:0005737 ... Q8DIF8 30405241
    102 6dho:c (2.07) BS12 CLA ? GO:0005737 ... Q8DIF8 30405241
    103 6dho:c (2.07) BS13 CLA ? GO:0005737 ... Q8DIF8 30405241
    104 6dho:c (2.07) BS14 CLA ? GO:0005737 ... Q8DIF8 30405241
    105 6dho:c (2.07) BS15 CLA ? GO:0005737 ... Q8DIF8 30405241
    106 6dho:d (2.07) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 30405241
    107 6dho:d (2.07) BS02 BCT 1.10.3.9 GO:0005506 ... Q8CM25 30405241
    108 6dho:d (2.07) BS03 CLA 1.10.3.9 GO:0005506 ... Q8CM25 30405241
    109 6dho:d (2.07) BS04 PHO 1.10.3.9 GO:0005506 ... Q8CM25 30405241
    110 6dho:d (2.07) BS05 CLA 1.10.3.9 GO:0005506 ... Q8CM25 30405241
    111 6dho:d (2.07) BS06 CLA 1.10.3.9 GO:0005506 ... Q8CM25 30405241
    112 6dho:d (2.07) BS07 PHO 1.10.3.9 GO:0005506 ... Q8CM25 30405241
    113 6dho:d (2.07) BS08 CLA 1.10.3.9 GO:0005506 ... Q8CM25 30405241
    114 6dho:d (2.07) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 30405241
    115 6dho:e (2.07) BS01 HEM ? GO:0005506 ... Q8DIP0 30405241
    116 6dho:f (2.07) BS01 HEM ? GO:0009523 ... Q8DIN9 30405241
    117 6dho:h (2.07) BS01 CLA ? GO:0009523 ... Q8DJ43 30405241
    118 6dho:h (2.07) BS02 CLA ? GO:0009523 ... Q8DJ43 30405241
    119 6dho:h (2.07) BS03 CLA ? GO:0009523 ... Q8DJ43 30405241
    120 6dho:i (2.07) BS01 CLA ? GO:0005737 ... Q8DJZ6 30405241
    121 6dho:k (2.07) BS01 CLA ? GO:0009523 ... Q9F1K9 30405241
    122 6dho:k (2.07) BS02 CLA ? GO:0009523 ... Q9F1K9 30405241
    123 6dho:v (2.07) BS01 HEC ? GO:0005506 ... P0A386 30405241
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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