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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 405 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5xnm:1 (3.2) BS01 CHL ? GO:0009765 ... P27490 28839073
    2 5xnm:1 (3.2) BS02 CLA ? GO:0009765 ... P27490 28839073
    3 5xnm:1 (3.2) BS03 CLA ? GO:0009765 ... P27490 28839073
    4 5xnm:1 (3.2) BS04 CHL ? GO:0009765 ... P27490 28839073
    5 5xnm:1 (3.2) BS05 CHL ? GO:0009765 ... P27490 28839073
    6 5xnm:1 (3.2) BS06 CHL ? GO:0009765 ... P27490 28839073
    7 5xnm:1 (3.2) BS07 CHL ? GO:0009765 ... P27490 28839073
    8 5xnm:1 (3.2) BS08 CHL ? GO:0009765 ... P27490 28839073
    9 5xnm:1 (3.2) BS09 CLA ? GO:0009765 ... P27490 28839073
    10 5xnm:1 (3.2) BS10 CLA ? GO:0009765 ... P27490 28839073
    11 5xnm:1 (3.2) BS11 CLA ? GO:0009765 ... P27490 28839073
    12 5xnm:1 (3.2) BS12 CLA ? GO:0009765 ... P27490 28839073
    13 5xnm:1 (3.2) BS13 CLA ? GO:0009765 ... P27490 28839073
    14 5xnm:1 (3.2) BS14 CHL ? GO:0009765 ... P27490 28839073
    15 5xnm:1 (3.2) BS15 CHL ? GO:0009765 ... P27490 28839073
    16 5xnm:2 (3.2) BS01 CHL ? GO:0009765 ... P27490 28839073
    17 5xnm:2 (3.2) BS02 CLA ? GO:0009765 ... P27490 28839073
    18 5xnm:2 (3.2) BS03 CLA ? GO:0009765 ... P27490 28839073
    19 5xnm:2 (3.2) BS04 CLA ? GO:0009765 ... P27490 28839073
    20 5xnm:2 (3.2) BS05 CHL ? GO:0009765 ... P27490 28839073
    21 5xnm:2 (3.2) BS06 CHL ? GO:0009765 ... P27490 28839073
    22 5xnm:2 (3.2) BS07 CHL ? GO:0009765 ... P27490 28839073
    23 5xnm:2 (3.2) BS08 CHL ? GO:0009765 ... P27490 28839073
    24 5xnm:2 (3.2) BS09 CHL ? GO:0009765 ... P27490 28839073
    25 5xnm:2 (3.2) BS10 CLA ? GO:0009765 ... P27490 28839073
    26 5xnm:2 (3.2) BS11 CLA ? GO:0009765 ... P27490 28839073
    27 5xnm:2 (3.2) BS12 CLA ? GO:0009765 ... P27490 28839073
    28 5xnm:2 (3.2) BS13 CLA ? GO:0009765 ... P27490 28839073
    29 5xnm:2 (3.2) BS14 CLA ? GO:0009765 ... P27490 28839073
    30 5xnm:2 (3.2) BS15 CHL ? GO:0009765 ... P27490 28839073
    31 5xnm:3 (3.2) BS01 CHL ? GO:0009416 ... Q04918 28839073
    32 5xnm:3 (3.2) BS02 CHL ? GO:0009416 ... Q04918 28839073
    33 5xnm:3 (3.2) BS03 CHL ? GO:0009416 ... Q04918 28839073
    34 5xnm:3 (3.2) BS04 CLA ? GO:0009416 ... Q04918 28839073
    35 5xnm:3 (3.2) BS05 CLA ? GO:0009416 ... Q04918 28839073
    36 5xnm:3 (3.2) BS06 CLA ? GO:0009416 ... Q04918 28839073
    37 5xnm:3 (3.2) BS07 CHL ? GO:0009416 ... Q04918 28839073
    38 5xnm:3 (3.2) BS08 CHL ? GO:0009416 ... Q04918 28839073
    39 5xnm:3 (3.2) BS09 CHL ? GO:0009416 ... Q04918 28839073
    40 5xnm:3 (3.2) BS10 CHL ? GO:0009416 ... Q04918 28839073
    41 5xnm:3 (3.2) BS11 CHL ? GO:0009416 ... Q04918 28839073
    42 5xnm:3 (3.2) BS12 CLA ? GO:0009416 ... Q04918 28839073
    43 5xnm:3 (3.2) BS13 CLA ? GO:0009416 ... Q04918 28839073
    44 5xnm:3 (3.2) BS14 CLA ? GO:0009416 ... Q04918 28839073
    45 5xnm:3 (3.2) BS15 CLA ? GO:0009416 ... Q04918 28839073
    46 5xnm:3 (3.2) BS16 CLA ? GO:0009416 ... Q04918 28839073
    47 5xnm:4 (3.2) BS01 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    48 5xnm:4 (3.2) BS02 CHL ? GO:0009416 ... A0A2D0TCJ3 28839073
    49 5xnm:4 (3.2) BS03 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    50 5xnm:4 (3.2) BS04 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    51 5xnm:4 (3.2) BS05 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    52 5xnm:4 (3.2) BS06 CHL ? GO:0009416 ... A0A2D0TCJ3 28839073
    53 5xnm:4 (3.2) BS07 CHL ? GO:0009416 ... A0A2D0TCJ3 28839073
    54 5xnm:4 (3.2) BS08 CHL ? GO:0009416 ... A0A2D0TCJ3 28839073
    55 5xnm:4 (3.2) BS09 CHL ? GO:0009416 ... A0A2D0TCJ3 28839073
    56 5xnm:4 (3.2) BS10 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    57 5xnm:4 (3.2) BS11 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    58 5xnm:4 (3.2) BS12 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    59 5xnm:4 (3.2) BS13 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    60 5xnm:5 (3.2) BS01 CHL ? GO:0009765 ... P27490 28839073
    61 5xnm:5 (3.2) BS02 CLA ? GO:0009765 ... P27490 28839073
    62 5xnm:5 (3.2) BS03 CLA ? GO:0009765 ... P27490 28839073
    63 5xnm:5 (3.2) BS04 CHL ? GO:0009765 ... P27490 28839073
    64 5xnm:5 (3.2) BS05 CHL ? GO:0009765 ... P27490 28839073
    65 5xnm:5 (3.2) BS06 CHL ? GO:0009765 ... P27490 28839073
    66 5xnm:5 (3.2) BS07 CHL ? GO:0009765 ... P27490 28839073
    67 5xnm:5 (3.2) BS08 CHL ? GO:0009765 ... P27490 28839073
    68 5xnm:5 (3.2) BS09 CLA ? GO:0009765 ... P27490 28839073
    69 5xnm:5 (3.2) BS10 CLA ? GO:0009765 ... P27490 28839073
    70 5xnm:5 (3.2) BS11 CLA ? GO:0009765 ... P27490 28839073
    71 5xnm:5 (3.2) BS12 CLA ? GO:0009765 ... P27490 28839073
    72 5xnm:5 (3.2) BS13 CLA ? GO:0009765 ... P27490 28839073
    73 5xnm:5 (3.2) BS14 CHL ? GO:0009765 ... P27490 28839073
    74 5xnm:5 (3.2) BS15 CHL ? GO:0009765 ... P27490 28839073
    75 5xnm:6 (3.2) BS01 CHL ? GO:0009765 ... P27490 28839073
    76 5xnm:6 (3.2) BS02 CLA ? GO:0009765 ... P27490 28839073
    77 5xnm:6 (3.2) BS03 CLA ? GO:0009765 ... P27490 28839073
    78 5xnm:6 (3.2) BS04 CLA ? GO:0009765 ... P27490 28839073
    79 5xnm:6 (3.2) BS05 CHL ? GO:0009765 ... P27490 28839073
    80 5xnm:6 (3.2) BS06 CHL ? GO:0009765 ... P27490 28839073
    81 5xnm:6 (3.2) BS07 CHL ? GO:0009765 ... P27490 28839073
    82 5xnm:6 (3.2) BS08 CHL ? GO:0009765 ... P27490 28839073
    83 5xnm:6 (3.2) BS09 CHL ? GO:0009765 ... P27490 28839073
    84 5xnm:6 (3.2) BS10 CLA ? GO:0009765 ... P27490 28839073
    85 5xnm:6 (3.2) BS11 CLA ? GO:0009765 ... P27490 28839073
    86 5xnm:6 (3.2) BS12 CLA ? GO:0009765 ... P27490 28839073
    87 5xnm:6 (3.2) BS13 CLA ? GO:0009765 ... P27490 28839073
    88 5xnm:6 (3.2) BS14 CLA ? GO:0009765 ... P27490 28839073
    89 5xnm:6 (3.2) BS15 CHL ? GO:0009765 ... P27490 28839073
    90 5xnm:7 (3.2) BS01 CHL ? GO:0009416 ... Q04918 28839073
    91 5xnm:7 (3.2) BS02 CHL ? GO:0009416 ... Q04918 28839073
    92 5xnm:7 (3.2) BS03 CHL ? GO:0009416 ... Q04918 28839073
    93 5xnm:7 (3.2) BS04 CLA ? GO:0009416 ... Q04918 28839073
    94 5xnm:7 (3.2) BS05 CLA ? GO:0009416 ... Q04918 28839073
    95 5xnm:7 (3.2) BS06 CLA ? GO:0009416 ... Q04918 28839073
    96 5xnm:7 (3.2) BS07 CHL ? GO:0009416 ... Q04918 28839073
    97 5xnm:7 (3.2) BS08 CHL ? GO:0009416 ... Q04918 28839073
    98 5xnm:7 (3.2) BS09 CHL ? GO:0009416 ... Q04918 28839073
    99 5xnm:7 (3.2) BS10 CHL ? GO:0009416 ... Q04918 28839073
    100 5xnm:7 (3.2) BS11 CHL ? GO:0009416 ... Q04918 28839073
    101 5xnm:7 (3.2) BS12 CLA ? GO:0009416 ... Q04918 28839073
    102 5xnm:7 (3.2) BS13 CLA ? GO:0009416 ... Q04918 28839073
    103 5xnm:7 (3.2) BS14 CLA ? GO:0009416 ... Q04918 28839073
    104 5xnm:7 (3.2) BS15 CLA ? GO:0009416 ... Q04918 28839073
    105 5xnm:7 (3.2) BS16 CLA ? GO:0009416 ... Q04918 28839073
    106 5xnm:8 (3.2) BS01 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    107 5xnm:8 (3.2) BS02 CHL ? GO:0009416 ... A0A2D0TCJ3 28839073
    108 5xnm:8 (3.2) BS03 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    109 5xnm:8 (3.2) BS04 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    110 5xnm:8 (3.2) BS05 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    111 5xnm:8 (3.2) BS06 CHL ? GO:0009416 ... A0A2D0TCJ3 28839073
    112 5xnm:8 (3.2) BS07 CHL ? GO:0009416 ... A0A2D0TCJ3 28839073
    113 5xnm:8 (3.2) BS08 CHL ? GO:0009416 ... A0A2D0TCJ3 28839073
    114 5xnm:8 (3.2) BS09 CHL ? GO:0009416 ... A0A2D0TCJ3 28839073
    115 5xnm:8 (3.2) BS10 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    116 5xnm:8 (3.2) BS11 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    117 5xnm:8 (3.2) BS12 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    118 5xnm:8 (3.2) BS13 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    119 5xnm:A (3.2) BS01 OEX 1.10.3.9 GO:0005506 ... P06585 28839073
    120 5xnm:A (3.2) BS02 FE2 1.10.3.9 GO:0005506 ... P06585 28839073
    121 5xnm:A (3.2) BS03 CLA 1.10.3.9 GO:0005506 ... P06585 28839073
    122 5xnm:A (3.2) BS04 CLA 1.10.3.9 GO:0005506 ... P06585 28839073
    123 5xnm:A (3.2) BS05 CLA 1.10.3.9 GO:0005506 ... P06585 28839073
    124 5xnm:A (3.2) BS06 PHO 1.10.3.9 GO:0005506 ... P06585 28839073
    125 5xnm:A (3.2) BS07 PHO 1.10.3.9 GO:0005506 ... P06585 28839073
    126 5xnm:A (3.2) BS08 CLA 1.10.3.9 GO:0005506 ... P06585 28839073
    127 5xnm:A (3.2) BS09 CLA 1.10.3.9 GO:0005506 ... P06585 28839073
    128 5xnm:A (3.2) BS10 BCT 1.10.3.9 GO:0005506 ... P06585 28839073
    129 5xnm:B (3.2) BS01 peptide ? GO:0009507 ... Q9XQR6 28839073
    130 5xnm:B (3.2) BS02 CLA ? GO:0009507 ... Q9XQR6 28839073
    131 5xnm:B (3.2) BS03 CLA ? GO:0009507 ... Q9XQR6 28839073
    132 5xnm:B (3.2) BS04 CLA ? GO:0009507 ... Q9XQR6 28839073
    133 5xnm:B (3.2) BS05 CLA ? GO:0009507 ... Q9XQR6 28839073
    134 5xnm:B (3.2) BS06 CLA ? GO:0009507 ... Q9XQR6 28839073
    135 5xnm:B (3.2) BS07 CLA ? GO:0009507 ... Q9XQR6 28839073
    136 5xnm:B (3.2) BS08 CLA ? GO:0009507 ... Q9XQR6 28839073
    137 5xnm:B (3.2) BS09 CLA ? GO:0009507 ... Q9XQR6 28839073
    138 5xnm:B (3.2) BS10 CLA ? GO:0009507 ... Q9XQR6 28839073
    139 5xnm:B (3.2) BS11 CLA ? GO:0009507 ... Q9XQR6 28839073
    140 5xnm:B (3.2) BS12 CLA ? GO:0009507 ... Q9XQR6 28839073
    141 5xnm:B (3.2) BS13 CLA ? GO:0009507 ... Q9XQR6 28839073
    142 5xnm:B (3.2) BS14 CLA ? GO:0009507 ... Q9XQR6 28839073
    143 5xnm:B (3.2) BS15 CLA ? GO:0009507 ... Q9XQR6 28839073
    144 5xnm:B (3.2) BS16 CLA ? GO:0009507 ... Q9XQR6 28839073
    145 5xnm:B (3.2) BS17 CLA ? GO:0009507 ... Q9XQR6 28839073
    146 5xnm:B (3.2) BS18 CLA ? GO:0009507 ... Q9XQR6 28839073
    147 5xnm:B (3.2) BS19 CHL ? GO:0009507 ... Q9XQR6 28839073
    148 5xnm:B (3.2) BS20 CLA ? GO:0009507 ... Q9XQR6 28839073
    149 5xnm:C (3.2) BS01 OEX ? GO:0005737 ... P06004 28839073
    150 5xnm:C (3.2) BS02 CLA ? GO:0005737 ... P06004 28839073
    151 5xnm:C (3.2) BS03 CLA ? GO:0005737 ... P06004 28839073
    152 5xnm:C (3.2) BS04 CLA ? GO:0005737 ... P06004 28839073
    153 5xnm:C (3.2) BS05 CLA ? GO:0005737 ... P06004 28839073
    154 5xnm:C (3.2) BS06 CLA ? GO:0005737 ... P06004 28839073
    155 5xnm:C (3.2) BS07 CLA ? GO:0005737 ... P06004 28839073
    156 5xnm:C (3.2) BS08 CLA ? GO:0005737 ... P06004 28839073
    157 5xnm:C (3.2) BS09 CLA ? GO:0005737 ... P06004 28839073
    158 5xnm:C (3.2) BS10 CLA ? GO:0005737 ... P06004 28839073
    159 5xnm:C (3.2) BS11 CLA ? GO:0005737 ... P06004 28839073
    160 5xnm:C (3.2) BS12 CLA ? GO:0005737 ... P06004 28839073
    161 5xnm:C (3.2) BS13 CLA ? GO:0005737 ... P06004 28839073
    162 5xnm:C (3.2) BS14 CLA ? GO:0005737 ... P06004 28839073
    163 5xnm:D (3.2) BS01 FE2 1.10.3.9 GO:0005506 ... P06006 28839073
    164 5xnm:D (3.2) BS02 CLA 1.10.3.9 GO:0005506 ... P06006 28839073
    165 5xnm:D (3.2) BS03 CLA 1.10.3.9 GO:0005506 ... P06006 28839073
    166 5xnm:D (3.2) BS04 PHO 1.10.3.9 GO:0005506 ... P06006 28839073
    167 5xnm:D (3.2) BS05 PHO 1.10.3.9 GO:0005506 ... P06006 28839073
    168 5xnm:D (3.2) BS06 CLA 1.10.3.9 GO:0005506 ... P06006 28839073
    169 5xnm:D (3.2) BS07 BCT 1.10.3.9 GO:0005506 ... P06006 28839073
    170 5xnm:D (3.2) BS08 CLA 1.10.3.9 GO:0005506 ... P06006 28839073
    171 5xnm:D (3.2) BS09 CLA 1.10.3.9 GO:0005506 ... P06006 28839073
    172 5xnm:E (3.2) BS01 peptide ? GO:0005506 ... P13554 28839073
    173 5xnm:E (3.2) BS02 HEM ? GO:0005506 ... P13554 28839073
    174 5xnm:F (3.2) BS01 HEM ? GO:0005506 ... P62096 28839073
    175 5xnm:G (3.2) BS01 CHL ? GO:0009765 ... P27490 28839073
    176 5xnm:G (3.2) BS02 CLA ? GO:0009765 ... P27490 28839073
    177 5xnm:G (3.2) BS03 CLA ? GO:0009765 ... P27490 28839073
    178 5xnm:G (3.2) BS04 CLA ? GO:0009765 ... P27490 28839073
    179 5xnm:G (3.2) BS05 CHL ? GO:0009765 ... P27490 28839073
    180 5xnm:G (3.2) BS06 CHL ? GO:0009765 ... P27490 28839073
    181 5xnm:G (3.2) BS07 CHL ? GO:0009765 ... P27490 28839073
    182 5xnm:G (3.2) BS08 CHL ? GO:0009765 ... P27490 28839073
    183 5xnm:G (3.2) BS09 CHL ? GO:0009765 ... P27490 28839073
    184 5xnm:G (3.2) BS10 CLA ? GO:0009765 ... P27490 28839073
    185 5xnm:G (3.2) BS11 CLA ? GO:0009765 ... P27490 28839073
    186 5xnm:G (3.2) BS12 CLA ? GO:0009765 ... P27490 28839073
    187 5xnm:G (3.2) BS13 CLA ? GO:0009765 ... P27490 28839073
    188 5xnm:G (3.2) BS14 CLA ? GO:0009765 ... P27490 28839073
    189 5xnm:G (3.2) BS15 CHL ? GO:0009765 ... P27490 28839073
    190 5xnm:G (3.2) BS16 CHL ? GO:0009765 ... P27490 28839073
    191 5xnm:H (3.2) BS01 CLA ? GO:0009507 ... Q9XQR3 28839073
    192 5xnm:H (3.2) BS02 CLA ? GO:0009507 ... Q9XQR3 28839073
    193 5xnm:I (3.2) BS01 CLA ? GO:0005737 ... D5MAJ9 28839073
    194 5xnm:I (3.2) BS02 CLA ? GO:0005737 ... D5MAJ9 28839073
    195 5xnm:K (3.2) BS01 CLA ? GO:0005737 ... D5MAJ8 28839073
    196 5xnm:K (3.2) BS02 CLA ? GO:0005737 ... D5MAJ8 28839073
    197 5xnm:L (3.2) BS01 CLA ? GO:0005737 ... P60147 28839073
    198 5xnm:M (3.2) BS01 CLA ? GO:0005737 ... P69529 28839073
    199 5xnm:N (3.2) BS01 CLA ? GO:0009765 ... P27490 28839073
    200 5xnm:N (3.2) BS02 CHL ? GO:0009765 ... P27490 28839073
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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