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BioLiP
Download all results in tab-seperated text for 130 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5ws5:A (2.35) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 28219079
    2 5ws5:A (2.35) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    3 5ws5:A (2.35) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    4 5ws5:A (2.35) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    5 5ws5:A (2.35) BS05 PHO 1.10.3.9 GO:0005506 ... P51765 28219079
    6 5ws5:A (2.35) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    7 5ws5:A (2.35) BS07 OEX 1.10.3.9 GO:0005506 ... P51765 28219079
    8 5ws5:A (2.35) BS08 BCT 1.10.3.9 GO:0005506 ... P51765 28219079
    9 5ws5:A (2.35) BS09 PHO 1.10.3.9 GO:0005506 ... P51765 28219079
    10 5ws5:A (2.35) BS10 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    11 5ws5:B (2.35) BS01 CLA ? GO:0009521 ... D0VWR1 28219079
    12 5ws5:B (2.35) BS02 CLA ? GO:0009521 ... D0VWR1 28219079
    13 5ws5:B (2.35) BS03 CLA ? GO:0009521 ... D0VWR1 28219079
    14 5ws5:B (2.35) BS04 CLA ? GO:0009521 ... D0VWR1 28219079
    15 5ws5:B (2.35) BS05 CLA ? GO:0009521 ... D0VWR1 28219079
    16 5ws5:B (2.35) BS06 CLA ? GO:0009521 ... D0VWR1 28219079
    17 5ws5:B (2.35) BS07 CLA ? GO:0009521 ... D0VWR1 28219079
    18 5ws5:B (2.35) BS08 CLA ? GO:0009521 ... D0VWR1 28219079
    19 5ws5:B (2.35) BS09 CLA ? GO:0009521 ... D0VWR1 28219079
    20 5ws5:B (2.35) BS10 CLA ? GO:0009521 ... D0VWR1 28219079
    21 5ws5:B (2.35) BS11 CLA ? GO:0009521 ... D0VWR1 28219079
    22 5ws5:B (2.35) BS12 CLA ? GO:0009521 ... D0VWR1 28219079
    23 5ws5:B (2.35) BS13 CLA ? GO:0009521 ... D0VWR1 28219079
    24 5ws5:B (2.35) BS14 CLA ? GO:0009521 ... D0VWR1 28219079
    25 5ws5:B (2.35) BS15 CLA ? GO:0009521 ... D0VWR1 28219079
    26 5ws5:B (2.35) BS16 CLA ? GO:0009521 ... D0VWR1 28219079
    27 5ws5:C (2.35) BS01 OEX ? GO:0005737 ... D0VWR7 28219079
    28 5ws5:C (2.35) BS02 CLA ? GO:0005737 ... D0VWR7 28219079
    29 5ws5:C (2.35) BS03 CLA ? GO:0005737 ... D0VWR7 28219079
    30 5ws5:C (2.35) BS04 CLA ? GO:0005737 ... D0VWR7 28219079
    31 5ws5:C (2.35) BS05 CLA ? GO:0005737 ... D0VWR7 28219079
    32 5ws5:C (2.35) BS06 CLA ? GO:0005737 ... D0VWR7 28219079
    33 5ws5:C (2.35) BS07 CLA ? GO:0005737 ... D0VWR7 28219079
    34 5ws5:C (2.35) BS08 CLA ? GO:0005737 ... D0VWR7 28219079
    35 5ws5:C (2.35) BS09 CLA ? GO:0005737 ... D0VWR7 28219079
    36 5ws5:C (2.35) BS10 CLA ? GO:0005737 ... D0VWR7 28219079
    37 5ws5:C (2.35) BS11 CLA ? GO:0005737 ... D0VWR7 28219079
    38 5ws5:C (2.35) BS12 CLA ? GO:0005737 ... D0VWR7 28219079
    39 5ws5:C (2.35) BS13 CLA ? GO:0005737 ... D0VWR7 28219079
    40 5ws5:C (2.35) BS14 CLA ? GO:0005737 ... D0VWR7 28219079
    41 5ws5:C (2.35) BS15 CA ? GO:0005737 ... D0VWR7 28219079
    42 5ws5:D (2.35) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    43 5ws5:D (2.35) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    44 5ws5:D (2.35) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    45 5ws5:D (2.35) BS04 PHO 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    46 5ws5:D (2.35) BS05 BCT 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    47 5ws5:D (2.35) BS06 PHO 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    48 5ws5:D (2.35) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    49 5ws5:D (2.35) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    50 5ws5:D (2.35) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    51 5ws5:E (2.35) BS01 HEM ? GO:0005506 ... P12238 28219079
    52 5ws5:F (2.35) BS01 HEM ? GO:0005506 ... P12239 28219079
    53 5ws5:H (2.35) BS01 CLA ? GO:0009523 ... P19052 28219079
    54 5ws5:H (2.35) BS02 CLA ? GO:0009523 ... P19052 28219079
    55 5ws5:H (2.35) BS03 CLA ? GO:0009523 ... P19052 28219079
    56 5ws5:I (2.35) BS01 CLA ? GO:0005737 ... P12240 28219079
    57 5ws5:J (2.35) BS01 MG ? GO:0009523 ... Q7DGD4 28219079
    58 5ws5:K (2.35) BS01 peptide ? GO:0005737 ... P19054 28219079
    59 5ws5:K (2.35) BS02 CLA ? GO:0005737 ... P19054 28219079
    60 5ws5:K (2.35) BS03 CLA ? GO:0005737 ... P19054 28219079
    61 5ws5:O (2.35) BS01 CA ? GO:0009523 ... D0VWR2 28219079
    62 5ws5:V (2.35) BS01 HEC ? GO:0005506 ... P0A387 28219079
    63 5ws5:Z (2.35) BS01 peptide ? GO:0009523 ... D0VWR5 28219079
    64 5ws5:Z (2.35) BS02 CLA ? GO:0009523 ... D0VWR5 28219079
    65 5ws5:a (2.35) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 28219079
    66 5ws5:a (2.35) BS02 BCT 1.10.3.9 GO:0005506 ... P51765 28219079
    67 5ws5:a (2.35) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    68 5ws5:a (2.35) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    69 5ws5:a (2.35) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    70 5ws5:a (2.35) BS06 PHO 1.10.3.9 GO:0005506 ... P51765 28219079
    71 5ws5:a (2.35) BS07 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    72 5ws5:a (2.35) BS08 OEX 1.10.3.9 GO:0005506 ... P51765 28219079
    73 5ws5:a (2.35) BS09 PHO 1.10.3.9 GO:0005506 ... P51765 28219079
    74 5ws5:a (2.35) BS10 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    75 5ws5:b (2.35) BS01 CLA ? GO:0009521 ... D0VWR1 28219079
    76 5ws5:b (2.35) BS02 CLA ? GO:0009521 ... D0VWR1 28219079
    77 5ws5:b (2.35) BS03 CLA ? GO:0009521 ... D0VWR1 28219079
    78 5ws5:b (2.35) BS04 CLA ? GO:0009521 ... D0VWR1 28219079
    79 5ws5:b (2.35) BS05 CLA ? GO:0009521 ... D0VWR1 28219079
    80 5ws5:b (2.35) BS06 CLA ? GO:0009521 ... D0VWR1 28219079
    81 5ws5:b (2.35) BS07 CLA ? GO:0009521 ... D0VWR1 28219079
    82 5ws5:b (2.35) BS08 CLA ? GO:0009521 ... D0VWR1 28219079
    83 5ws5:b (2.35) BS09 CLA ? GO:0009521 ... D0VWR1 28219079
    84 5ws5:b (2.35) BS10 CLA ? GO:0009521 ... D0VWR1 28219079
    85 5ws5:b (2.35) BS11 CLA ? GO:0009521 ... D0VWR1 28219079
    86 5ws5:b (2.35) BS12 CLA ? GO:0009521 ... D0VWR1 28219079
    87 5ws5:b (2.35) BS13 CLA ? GO:0009521 ... D0VWR1 28219079
    88 5ws5:b (2.35) BS14 CLA ? GO:0009521 ... D0VWR1 28219079
    89 5ws5:b (2.35) BS15 CLA ? GO:0009521 ... D0VWR1 28219079
    90 5ws5:b (2.35) BS16 CLA ? GO:0009521 ... D0VWR1 28219079
    91 5ws5:c (2.35) BS01 OEX ? GO:0005737 ... D0VWR7 28219079
    92 5ws5:c (2.35) BS02 CLA ? GO:0005737 ... D0VWR7 28219079
    93 5ws5:c (2.35) BS03 CLA ? GO:0005737 ... D0VWR7 28219079
    94 5ws5:c (2.35) BS04 CLA ? GO:0005737 ... D0VWR7 28219079
    95 5ws5:c (2.35) BS05 CLA ? GO:0005737 ... D0VWR7 28219079
    96 5ws5:c (2.35) BS06 CLA ? GO:0005737 ... D0VWR7 28219079
    97 5ws5:c (2.35) BS07 CLA ? GO:0005737 ... D0VWR7 28219079
    98 5ws5:c (2.35) BS08 CLA ? GO:0005737 ... D0VWR7 28219079
    99 5ws5:c (2.35) BS09 CLA ? GO:0005737 ... D0VWR7 28219079
    100 5ws5:c (2.35) BS10 CLA ? GO:0005737 ... D0VWR7 28219079
    101 5ws5:c (2.35) BS11 CLA ? GO:0005737 ... D0VWR7 28219079
    102 5ws5:c (2.35) BS12 CLA ? GO:0005737 ... D0VWR7 28219079
    103 5ws5:c (2.35) BS13 CLA ? GO:0005737 ... D0VWR7 28219079
    104 5ws5:c (2.35) BS14 CLA ? GO:0005737 ... D0VWR7 28219079
    105 5ws5:c (2.35) BS15 CA ? GO:0005737 ... D0VWR7 28219079
    106 5ws5:c (2.35) BS16 CA ? GO:0005737 ... D0VWR7 28219079
    107 5ws5:d (2.35) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    108 5ws5:d (2.35) BS02 BCT 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    109 5ws5:d (2.35) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    110 5ws5:d (2.35) BS04 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    111 5ws5:d (2.35) BS05 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    112 5ws5:d (2.35) BS06 PHO 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    113 5ws5:d (2.35) BS07 PHO 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    114 5ws5:d (2.35) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    115 5ws5:d (2.35) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    116 5ws5:d (2.35) BS10 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    117 5ws5:e (2.35) BS01 HEM ? GO:0005506 ... P12238 28219079
    118 5ws5:f (2.35) BS01 HEM ? GO:0005506 ... P12239 28219079
    119 5ws5:h (2.35) BS01 CLA ? GO:0009523 ... P19052 28219079
    120 5ws5:h (2.35) BS02 CLA ? GO:0009523 ... P19052 28219079
    121 5ws5:h (2.35) BS03 CLA ? GO:0009523 ... P19052 28219079
    122 5ws5:i (2.35) BS01 CLA ? GO:0005737 ... P12240 28219079
    123 5ws5:i (2.35) BS02 CLA ? GO:0005737 ... P12240 28219079
    124 5ws5:j (2.35) BS01 MG ? GO:0009523 ... Q7DGD4 28219079
    125 5ws5:k (2.35) BS01 peptide ? GO:0005737 ... P19054 28219079
    126 5ws5:k (2.35) BS02 CLA ? GO:0005737 ... P19054 28219079
    127 5ws5:k (2.35) BS03 CLA ? GO:0005737 ... P19054 28219079
    128 5ws5:o (2.35) BS01 CA ? GO:0009523 ... D0VWR2 28219079
    129 5ws5:v (2.35) BS01 HEC ? GO:0005506 ... P0A387 28219079
    130 5ws5:z (2.35) BS01 peptide ? GO:0009523 ... D0VWR5 28219079
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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