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BioLiP
Download all results in tab-seperated text for 117 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5kaf:A (3.00001) BS01 OEX 1.10.3.9 GO:0005506 ... P0A444 27871088
    2 5kaf:A (3.00001) BS02 FE2 1.10.3.9 GO:0005506 ... P0A444 27871088
    3 5kaf:A (3.00001) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 27871088
    4 5kaf:A (3.00001) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 27871088
    5 5kaf:A (3.00001) BS05 PHO 1.10.3.9 GO:0005506 ... P0A444 27871088
    6 5kaf:A (3.00001) BS06 CLA 1.10.3.9 GO:0005506 ... P0A444 27871088
    7 5kaf:A (3.00001) BS07 CLA 1.10.3.9 GO:0005506 ... P0A444 27871088
    8 5kaf:A (3.00001) BS08 BCT 1.10.3.9 GO:0005506 ... P0A444 27871088
    9 5kaf:A (3.00001) BS09 CLA 1.10.3.9 GO:0005506 ... P0A444 27871088
    10 5kaf:A (3.00001) BS10 PHO 1.10.3.9 GO:0005506 ... P0A444 27871088
    11 5kaf:B (3.00001) BS01 CLA ? GO:0009521 ... Q8DIQ1 27871088
    12 5kaf:B (3.00001) BS02 CLA ? GO:0009521 ... Q8DIQ1 27871088
    13 5kaf:B (3.00001) BS03 CLA ? GO:0009521 ... Q8DIQ1 27871088
    14 5kaf:B (3.00001) BS04 CLA ? GO:0009521 ... Q8DIQ1 27871088
    15 5kaf:B (3.00001) BS05 CLA ? GO:0009521 ... Q8DIQ1 27871088
    16 5kaf:B (3.00001) BS06 CLA ? GO:0009521 ... Q8DIQ1 27871088
    17 5kaf:B (3.00001) BS07 CLA ? GO:0009521 ... Q8DIQ1 27871088
    18 5kaf:B (3.00001) BS08 CLA ? GO:0009521 ... Q8DIQ1 27871088
    19 5kaf:B (3.00001) BS09 CLA ? GO:0009521 ... Q8DIQ1 27871088
    20 5kaf:B (3.00001) BS10 CLA ? GO:0009521 ... Q8DIQ1 27871088
    21 5kaf:B (3.00001) BS11 CLA ? GO:0009521 ... Q8DIQ1 27871088
    22 5kaf:B (3.00001) BS12 CLA ? GO:0009521 ... Q8DIQ1 27871088
    23 5kaf:B (3.00001) BS13 CLA ? GO:0009521 ... Q8DIQ1 27871088
    24 5kaf:B (3.00001) BS14 CLA ? GO:0009521 ... Q8DIQ1 27871088
    25 5kaf:B (3.00001) BS15 CLA ? GO:0009521 ... Q8DIQ1 27871088
    26 5kaf:B (3.00001) BS16 CLA ? GO:0009521 ... Q8DIQ1 27871088
    27 5kaf:C (3.00001) BS01 OEX ? GO:0005737 ... Q8DIF8 27871088
    28 5kaf:C (3.00001) BS02 CLA ? GO:0005737 ... Q8DIF8 27871088
    29 5kaf:C (3.00001) BS03 CLA ? GO:0005737 ... Q8DIF8 27871088
    30 5kaf:C (3.00001) BS04 CLA ? GO:0005737 ... Q8DIF8 27871088
    31 5kaf:C (3.00001) BS05 CLA ? GO:0005737 ... Q8DIF8 27871088
    32 5kaf:C (3.00001) BS06 CLA ? GO:0005737 ... Q8DIF8 27871088
    33 5kaf:C (3.00001) BS07 CLA ? GO:0005737 ... Q8DIF8 27871088
    34 5kaf:C (3.00001) BS08 CLA ? GO:0005737 ... Q8DIF8 27871088
    35 5kaf:C (3.00001) BS09 CLA ? GO:0005737 ... Q8DIF8 27871088
    36 5kaf:C (3.00001) BS10 CLA ? GO:0005737 ... Q8DIF8 27871088
    37 5kaf:C (3.00001) BS11 CLA ? GO:0005737 ... Q8DIF8 27871088
    38 5kaf:C (3.00001) BS12 CLA ? GO:0005737 ... Q8DIF8 27871088
    39 5kaf:C (3.00001) BS13 CLA ? GO:0005737 ... Q8DIF8 27871088
    40 5kaf:C (3.00001) BS14 CLA ? GO:0005737 ... Q8DIF8 27871088
    41 5kaf:D (3.00001) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 27871088
    42 5kaf:D (3.00001) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 27871088
    43 5kaf:D (3.00001) BS03 PHO 1.10.3.9 GO:0005506 ... Q8CM25 27871088
    44 5kaf:D (3.00001) BS04 CLA 1.10.3.9 GO:0005506 ... Q8CM25 27871088
    45 5kaf:D (3.00001) BS05 BCT 1.10.3.9 GO:0005506 ... Q8CM25 27871088
    46 5kaf:D (3.00001) BS06 CLA 1.10.3.9 GO:0005506 ... Q8CM25 27871088
    47 5kaf:D (3.00001) BS07 PHO 1.10.3.9 GO:0005506 ... Q8CM25 27871088
    48 5kaf:D (3.00001) BS08 CLA 1.10.3.9 GO:0005506 ... Q8CM25 27871088
    49 5kaf:D (3.00001) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 27871088
    50 5kaf:E (3.00001) BS01 HEM ? GO:0005506 ... Q8DIP0 27871088
    51 5kaf:F (3.00001) BS01 HEM ? GO:0005506 ... Q8DIN9 27871088
    52 5kaf:H (3.00001) BS01 CLA ? GO:0009523 ... Q8DJ43 27871088
    53 5kaf:H (3.00001) BS02 CLA ? GO:0009523 ... Q8DJ43 27871088
    54 5kaf:I (3.00001) BS01 CLA ? GO:0005737 ... Q8DJZ6 27871088
    55 5kaf:K (3.00001) BS01 CLA ? GO:0005737 ... Q9F1K9 27871088
    56 5kaf:V (3.00001) BS01 HEC ? GO:0005506 ... P0A386 27871088
    57 5kaf:X (3.00001) BS01 CLA ? GO:0009523 ... Q9F1R6 27871088
    58 5kaf:Z (3.00001) BS01 CLA ? GO:0009523 ... Q8DHJ2 27871088
    59 5kaf:a (3.00001) BS01 OEX 1.10.3.9 GO:0005506 ... P0A444 27871088
    60 5kaf:a (3.00001) BS02 FE2 1.10.3.9 GO:0005506 ... P0A444 27871088
    61 5kaf:a (3.00001) BS03 BCT 1.10.3.9 GO:0005506 ... P0A444 27871088
    62 5kaf:a (3.00001) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 27871088
    63 5kaf:a (3.00001) BS05 CLA 1.10.3.9 GO:0005506 ... P0A444 27871088
    64 5kaf:a (3.00001) BS06 PHO 1.10.3.9 GO:0005506 ... P0A444 27871088
    65 5kaf:a (3.00001) BS07 CLA 1.10.3.9 GO:0005506 ... P0A444 27871088
    66 5kaf:a (3.00001) BS08 CLA 1.10.3.9 GO:0005506 ... P0A444 27871088
    67 5kaf:a (3.00001) BS09 CLA 1.10.3.9 GO:0005506 ... P0A444 27871088
    68 5kaf:a (3.00001) BS10 PHO 1.10.3.9 GO:0005506 ... P0A444 27871088
    69 5kaf:b (3.00001) BS01 CLA ? GO:0009521 ... Q8DIQ1 27871088
    70 5kaf:b (3.00001) BS02 CLA ? GO:0009521 ... Q8DIQ1 27871088
    71 5kaf:b (3.00001) BS03 CLA ? GO:0009521 ... Q8DIQ1 27871088
    72 5kaf:b (3.00001) BS04 CLA ? GO:0009521 ... Q8DIQ1 27871088
    73 5kaf:b (3.00001) BS05 CLA ? GO:0009521 ... Q8DIQ1 27871088
    74 5kaf:b (3.00001) BS06 CLA ? GO:0009521 ... Q8DIQ1 27871088
    75 5kaf:b (3.00001) BS07 CLA ? GO:0009521 ... Q8DIQ1 27871088
    76 5kaf:b (3.00001) BS08 CLA ? GO:0009521 ... Q8DIQ1 27871088
    77 5kaf:b (3.00001) BS09 CLA ? GO:0009521 ... Q8DIQ1 27871088
    78 5kaf:b (3.00001) BS10 CLA ? GO:0009521 ... Q8DIQ1 27871088
    79 5kaf:b (3.00001) BS11 CLA ? GO:0009521 ... Q8DIQ1 27871088
    80 5kaf:b (3.00001) BS12 CLA ? GO:0009521 ... Q8DIQ1 27871088
    81 5kaf:b (3.00001) BS13 CLA ? GO:0009521 ... Q8DIQ1 27871088
    82 5kaf:b (3.00001) BS14 CLA ? GO:0009521 ... Q8DIQ1 27871088
    83 5kaf:b (3.00001) BS15 CLA ? GO:0009521 ... Q8DIQ1 27871088
    84 5kaf:b (3.00001) BS16 CLA ? GO:0009521 ... Q8DIQ1 27871088
    85 5kaf:c (3.00001) BS01 OEX ? GO:0005737 ... Q8DIF8 27871088
    86 5kaf:c (3.00001) BS02 CLA ? GO:0005737 ... Q8DIF8 27871088
    87 5kaf:c (3.00001) BS03 CLA ? GO:0005737 ... Q8DIF8 27871088
    88 5kaf:c (3.00001) BS04 CLA ? GO:0005737 ... Q8DIF8 27871088
    89 5kaf:c (3.00001) BS05 CLA ? GO:0005737 ... Q8DIF8 27871088
    90 5kaf:c (3.00001) BS06 CLA ? GO:0005737 ... Q8DIF8 27871088
    91 5kaf:c (3.00001) BS07 CLA ? GO:0005737 ... Q8DIF8 27871088
    92 5kaf:c (3.00001) BS08 CLA ? GO:0005737 ... Q8DIF8 27871088
    93 5kaf:c (3.00001) BS09 CLA ? GO:0005737 ... Q8DIF8 27871088
    94 5kaf:c (3.00001) BS10 CLA ? GO:0005737 ... Q8DIF8 27871088
    95 5kaf:c (3.00001) BS11 CLA ? GO:0005737 ... Q8DIF8 27871088
    96 5kaf:c (3.00001) BS12 CLA ? GO:0005737 ... Q8DIF8 27871088
    97 5kaf:c (3.00001) BS13 CLA ? GO:0005737 ... Q8DIF8 27871088
    98 5kaf:c (3.00001) BS14 CLA ? GO:0005737 ... Q8DIF8 27871088
    99 5kaf:d (3.00001) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 27871088
    100 5kaf:d (3.00001) BS02 BCT 1.10.3.9 GO:0005506 ... Q8CM25 27871088
    101 5kaf:d (3.00001) BS03 CLA 1.10.3.9 GO:0005506 ... Q8CM25 27871088
    102 5kaf:d (3.00001) BS04 PHO 1.10.3.9 GO:0005506 ... Q8CM25 27871088
    103 5kaf:d (3.00001) BS05 CLA 1.10.3.9 GO:0005506 ... Q8CM25 27871088
    104 5kaf:d (3.00001) BS06 CLA 1.10.3.9 GO:0005506 ... Q8CM25 27871088
    105 5kaf:d (3.00001) BS07 PHO 1.10.3.9 GO:0005506 ... Q8CM25 27871088
    106 5kaf:d (3.00001) BS08 CLA 1.10.3.9 GO:0005506 ... Q8CM25 27871088
    107 5kaf:d (3.00001) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 27871088
    108 5kaf:e (3.00001) BS01 HEM ? GO:0005506 ... Q8DIP0 27871088
    109 5kaf:f (3.00001) BS01 HEM ? GO:0005506 ... Q8DIN9 27871088
    110 5kaf:h (3.00001) BS01 CLA ? GO:0009523 ... Q8DJ43 27871088
    111 5kaf:h (3.00001) BS02 CLA ? GO:0009523 ... Q8DJ43 27871088
    112 5kaf:h (3.00001) BS03 CLA ? GO:0009523 ... Q8DJ43 27871088
    113 5kaf:i (3.00001) BS01 CLA ? GO:0005737 ... Q8DJZ6 27871088
    114 5kaf:i (3.00001) BS02 CLA ? GO:0005737 ... Q8DJZ6 27871088
    115 5kaf:k (3.00001) BS01 CLA ? GO:0005737 ... Q9F1K9 27871088
    116 5kaf:v (3.00001) BS01 HEC ? GO:0005506 ... P0A386 27871088
    117 5kaf:z (3.00001) BS01 CLA ? GO:0009523 ... Q8DHJ2 27871088
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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