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BioLiP Library
Download all results in tab-seperated text for 193 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v9q:A2 (3.4) BS01 rna ? GO:0003735 ... P62652 23824292
    2 4v9q:A3 (3.4) BS01 rna ? GO:0003735 ... Q72GW3 23824292
    3 4v9q:A4 (3.4) BS01 rna ? GO:0003735 ... P80340 23824292
    4 4v9q:A4 (3.4) BS02 MG ? GO:0003735 ... P80340 23824292
    5 4v9q:A4 (3.4) BS03 MG ? GO:0003735 ... P80340 23824292
    6 4v9q:A4 (3.4) BS04 MG ? GO:0003735 ... P80340 23824292
    7 4v9q:A5 (3.4) BS01 rna ? GO:0003735 ... Q72L77 23824292
    8 4v9q:AD (3.4) BS01 rna ? GO:0002181 ... Q72I07 23824292
    9 4v9q:AD (3.4) BS02 MG ? GO:0002181 ... Q72I07 23824292
    10 4v9q:AD (3.4) BS03 MG ? GO:0002181 ... Q72I07 23824292
    11 4v9q:AD (3.4) BS04 MG ? GO:0002181 ... Q72I07 23824292
    12 4v9q:AD (3.4) BS05 MG ? GO:0002181 ... Q72I07 23824292
    13 4v9q:AE (3.4) BS01 rna ? GO:0003735 ... Q72I04 23824292
    14 4v9q:AE (3.4) BS02 MG ? GO:0003735 ... Q72I04 23824292
    15 4v9q:AF (3.4) BS01 rna ? GO:0003735 ... Q72I05 23824292
    16 4v9q:AF (3.4) BS02 MG ? GO:0003735 ... Q72I05 23824292
    17 4v9q:AF (3.4) BS03 MG ? GO:0003735 ... Q72I05 23824292
    18 4v9q:AF (3.4) BS04 MG ? GO:0003735 ... Q72I05 23824292
    19 4v9q:AG (3.4) BS01 rna ? GO:0000049 ... Q72I16 23824292
    20 4v9q:AG (3.4) BS02 rna ? GO:0000049 ... Q72I16 23824292
    21 4v9q:AG (3.4) BS03 rna ? GO:0000049 ... Q72I16 23824292
    22 4v9q:AG (3.4) BS04 MG ? GO:0000049 ... Q72I16 23824292
    23 4v9q:AH (3.4) BS01 rna ? GO:0003735 ... Q72I19 23824292
    24 4v9q:AI (3.4) BS01 rna ? GO:0003735 ... Q72GV5 23824292
    25 4v9q:AJ (3.4) BS01 rna ? GO:0003729 ... Q72IN1 23824292
    26 4v9q:AJ (3.4) BS02 MG ? GO:0003729 ... Q72IN1 23824292
    27 4v9q:AK (3.4) BS01 rna ? GO:0003735 ... Q72I14 23824292
    28 4v9q:AK (3.4) BS02 rna ? GO:0003735 ... Q72I14 23824292
    29 4v9q:AL (3.4) BS01 rna ? GO:0003735 ... Q72I23 23824292
    30 4v9q:AL (3.4) BS02 MG ? GO:0003735 ... Q72I23 23824292
    31 4v9q:AL (3.4) BS03 MG ? GO:0003735 ... Q72I23 23824292
    32 4v9q:AL (3.4) BS04 MG ? GO:0003735 ... Q72I23 23824292
    33 4v9q:AM (3.4) BS01 rna ? GO:0000049 ... Q72I11 23824292
    34 4v9q:AM (3.4) BS02 rna ? GO:0000049 ... Q72I11 23824292
    35 4v9q:AN (3.4) BS01 rna ? GO:0003735 ... Q72I33 23824292
    36 4v9q:AO (3.4) BS01 rna ? GO:0003735 ... Q72I20 23824292
    37 4v9q:AO (3.4) BS02 rna ? GO:0003735 ... Q72I20 23824292
    38 4v9q:AO (3.4) BS03 MG ? GO:0003735 ... Q72I20 23824292
    39 4v9q:AP (3.4) BS01 rna ? GO:0003735 ... Q72JU9 23824292
    40 4v9q:AP (3.4) BS02 rna ? GO:0003735 ... Q72JU9 23824292
    41 4v9q:AQ (3.4) BS01 rna ? GO:0000027 ... Q72L76 23824292
    42 4v9q:AQ (3.4) BS02 MG ? GO:0000027 ... Q72L76 23824292
    43 4v9q:AR (3.4) BS01 rna ? GO:0003723 ... Q72HR2 23824292
    44 4v9q:AR (3.4) BS02 MG ? GO:0003723 ... Q72HR2 23824292
    45 4v9q:AR (3.4) BS03 MG ? GO:0003723 ... Q72HR2 23824292
    46 4v9q:AS (3.4) BS01 rna ? GO:0003735 ... Q72I09 23824292
    47 4v9q:AS (3.4) BS02 MG ? GO:0003735 ... Q72I09 23824292
    48 4v9q:AS (3.4) BS03 MG ? GO:0003735 ... Q72I09 23824292
    49 4v9q:AT (3.4) BS01 rna ? GO:0000027 ... Q72I06 23824292
    50 4v9q:AU (3.4) BS01 rna ? GO:0003723 ... Q72I15 23824292
    51 4v9q:AV (3.4) BS01 rna ? GO:0003723 ... Q72IA7 23824292
    52 4v9q:AV (3.4) BS02 rna ? GO:0003723 ... Q72IA7 23824292
    53 4v9q:AW (3.4) BS01 rna ? GO:0003735 ... Q72HR3 23824292
    54 4v9q:AW (3.4) BS02 rna ? GO:0003735 ... Q72HR3 23824292
    55 4v9q:AW (3.4) BS03 MG ? GO:0003735 ... Q72HR3 23824292
    56 4v9q:AX (3.4) BS01 rna ? GO:0005840 ... Q72G84 23824292
    57 4v9q:AX (3.4) BS02 MG ? GO:0005840 ... Q72G84 23824292
    58 4v9q:AY (3.4) BS01 rna ? GO:0003735 ... Q72I12 23824292
    59 4v9q:AZ (3.4) BS01 rna ? GO:0003735 ... Q72I22 23824292
    60 4v9q:AZ (3.4) BS02 rna ? GO:0003735 ... Q72I22 23824292
    61 4v9q:BB (3.4) BS01 rna ? GO:0003735 ... P62662 23824292
    62 4v9q:BC (3.4) BS01 rna ? GO:0003676 ... P62663 23824292
    63 4v9q:BC (3.4) BS02 MG ? GO:0003676 ... P62663 23824292
    64 4v9q:BD (3.4) BS01 rna ? GO:0003723 ... P62664 23824292
    65 4v9q:BE (3.4) BS01 rna ? GO:0003723 ... P62665 23824292
    66 4v9q:BE (3.4) BS02 MG ? GO:0003723 ... P62665 23824292
    67 4v9q:BE (3.4) BS03 MG ? GO:0003723 ... P62665 23824292
    68 4v9q:BE (3.4) BS04 MG ? GO:0003723 ... P62665 23824292
    69 4v9q:BF (3.4) BS01 rna ? GO:0003735 ... P62666 23824292
    70 4v9q:BG (3.4) BS01 rna ? GO:0000028 ... P62667 23824292
    71 4v9q:BG (3.4) BS02 rna ? GO:0000028 ... P62667 23824292
    72 4v9q:BH (3.4) BS01 rna ? GO:0003735 ... P62668 23824292
    73 4v9q:BH (3.4) BS02 MG ? GO:0003735 ... P62668 23824292
    74 4v9q:BI (3.4) BS01 rna ? GO:0000049 ... P62669 23824292
    75 4v9q:BI (3.4) BS02 rna ? GO:0000049 ... P62669 23824292
    76 4v9q:BI (3.4) BS03 MG ? GO:0000049 ... P62669 23824292
    77 4v9q:BI (3.4) BS04 MG ? GO:0000049 ... P62669 23824292
    78 4v9q:BJ (3.4) BS01 rna ? GO:0000049 ... P62653 23824292
    79 4v9q:BJ (3.4) BS02 MG ? GO:0000049 ... P62653 23824292
    80 4v9q:BK (3.4) BS01 rna ? GO:0003735 ... P62654 23824292
    81 4v9q:BK (3.4) BS02 MG ? GO:0003735 ... P62654 23824292
    82 4v9q:BL (3.4) BS01 rna ? GO:0000049 ... P61941 23824292
    83 4v9q:BL (3.4) BS02 MG ? GO:0000049 ... P61941 23824292
    84 4v9q:BM (3.4) BS01 rna ? GO:0000049 ... P62655 23824292
    85 4v9q:BN (3.4) BS01 rna ? GO:0003735 ... P62656 23824292
    86 4v9q:BN (3.4) BS02 ZN ? GO:0003735 ... P62656 23824292
    87 4v9q:BO (3.4) BS01 rna ? GO:0003735 ... P62657 23824292
    88 4v9q:BO (3.4) BS02 rna ? GO:0003735 ... P62657 23824292
    89 4v9q:BP (3.4) BS01 rna ? GO:0003735 ... P62238 23824292
    90 4v9q:BQ (3.4) BS01 rna ? GO:0003735 ... P62658 23824292
    91 4v9q:BQ (3.4) BS02 MG ? GO:0003735 ... P62658 23824292
    92 4v9q:BR (3.4) BS01 rna ? GO:0003735 ... P62659 23824292
    93 4v9q:BS (3.4) BS01 rna ? GO:0003723 ... P62660 23824292
    94 4v9q:BT (3.4) BS01 rna ? GO:0003723 ... P62661 23824292
    95 4v9q:C2 (3.4) BS01 rna ? GO:0003735 ... P62652 23824292
    96 4v9q:C3 (3.4) BS01 rna ? GO:0003735 ... Q72GW3 23824292
    97 4v9q:C3 (3.4) BS02 MG ? GO:0003735 ... Q72GW3 23824292
    98 4v9q:C4 (3.4) BS01 rna ? GO:0003735 ... P80340 23824292
    99 4v9q:C4 (3.4) BS02 MG ? GO:0003735 ... P80340 23824292
    100 4v9q:C4 (3.4) BS03 MG ? GO:0003735 ... P80340 23824292
    101 4v9q:C4 (3.4) BS04 MG ? GO:0003735 ... P80340 23824292
    102 4v9q:C5 (3.4) BS01 rna ? GO:0003735 ... Q72L77 23824292
    103 4v9q:C5 (3.4) BS02 MG ? GO:0003735 ... Q72L77 23824292
    104 4v9q:CD (3.4) BS01 rna ? GO:0002181 ... Q72I07 23824292
    105 4v9q:CD (3.4) BS02 MG ? GO:0002181 ... Q72I07 23824292
    106 4v9q:CD (3.4) BS03 MG ? GO:0002181 ... Q72I07 23824292
    107 4v9q:CD (3.4) BS04 MG ? GO:0002181 ... Q72I07 23824292
    108 4v9q:CD (3.4) BS05 MG ? GO:0002181 ... Q72I07 23824292
    109 4v9q:CD (3.4) BS06 MG ? GO:0002181 ... Q72I07 23824292
    110 4v9q:CE (3.4) BS01 rna ? GO:0003735 ... Q72I04 23824292
    111 4v9q:CE (3.4) BS02 MG ? GO:0003735 ... Q72I04 23824292
    112 4v9q:CF (3.4) BS01 rna ? GO:0003735 ... Q72I05 23824292
    113 4v9q:CF (3.4) BS02 MG ? GO:0003735 ... Q72I05 23824292
    114 4v9q:CF (3.4) BS03 MG ? GO:0003735 ... Q72I05 23824292
    115 4v9q:CG (3.4) BS01 rna ? GO:0000049 ... Q72I16 23824292
    116 4v9q:CG (3.4) BS02 rna ? GO:0000049 ... Q72I16 23824292
    117 4v9q:CG (3.4) BS03 rna ? GO:0000049 ... Q72I16 23824292
    118 4v9q:CG (3.4) BS04 MG ? GO:0000049 ... Q72I16 23824292
    119 4v9q:CH (3.4) BS01 rna ? GO:0003735 ... Q72I19 23824292
    120 4v9q:CI (3.4) BS01 rna ? GO:0003735 ... Q72GV5 23824292
    121 4v9q:CI (3.4) BS02 rna ? GO:0003735 ... Q72GV5 23824292
    122 4v9q:CJ (3.4) BS01 rna ? GO:0003729 ... Q72IN1 23824292
    123 4v9q:CK (3.4) BS01 rna ? GO:0003735 ... Q72I14 23824292
    124 4v9q:CK (3.4) BS02 rna ? GO:0003735 ... Q72I14 23824292
    125 4v9q:CK (3.4) BS03 MG ? GO:0003735 ... Q72I14 23824292
    126 4v9q:CL (3.4) BS01 rna ? GO:0003735 ... Q72I23 23824292
    127 4v9q:CL (3.4) BS02 MG ? GO:0003735 ... Q72I23 23824292
    128 4v9q:CL (3.4) BS03 MG ? GO:0003735 ... Q72I23 23824292
    129 4v9q:CL (3.4) BS04 MG ? GO:0003735 ... Q72I23 23824292
    130 4v9q:CM (3.4) BS01 rna ? GO:0000049 ... Q72I11 23824292
    131 4v9q:CM (3.4) BS02 rna ? GO:0000049 ... Q72I11 23824292
    132 4v9q:CN (3.4) BS01 rna ? GO:0003735 ... Q72I33 23824292
    133 4v9q:CN (3.4) BS02 MG ? GO:0003735 ... Q72I33 23824292
    134 4v9q:CN (3.4) BS03 MG ? GO:0003735 ... Q72I33 23824292
    135 4v9q:CN (3.4) BS04 MG ? GO:0003735 ... Q72I33 23824292
    136 4v9q:CO (3.4) BS01 rna ? GO:0003735 ... Q72I20 23824292
    137 4v9q:CO (3.4) BS02 rna ? GO:0003735 ... Q72I20 23824292
    138 4v9q:CP (3.4) BS01 rna ? GO:0003735 ... Q72JU9 23824292
    139 4v9q:CP (3.4) BS02 rna ? GO:0003735 ... Q72JU9 23824292
    140 4v9q:CQ (3.4) BS01 rna ? GO:0000027 ... Q72L76 23824292
    141 4v9q:CQ (3.4) BS02 MG ? GO:0000027 ... Q72L76 23824292
    142 4v9q:CQ (3.4) BS03 MG ? GO:0000027 ... Q72L76 23824292
    143 4v9q:CQ (3.4) BS04 MG ? GO:0000027 ... Q72L76 23824292
    144 4v9q:CQ (3.4) BS05 MG ? GO:0000027 ... Q72L76 23824292
    145 4v9q:CR (3.4) BS01 rna ? GO:0003723 ... Q72HR2 23824292
    146 4v9q:CS (3.4) BS01 rna ? GO:0003735 ... Q72I09 23824292
    147 4v9q:CS (3.4) BS02 MG ? GO:0003735 ... Q72I09 23824292
    148 4v9q:CT (3.4) BS01 rna ? GO:0000027 ... Q72I06 23824292
    149 4v9q:CU (3.4) BS01 rna ? GO:0003723 ... Q72I15 23824292
    150 4v9q:CV (3.4) BS01 rna ? GO:0003723 ... Q72IA7 23824292
    151 4v9q:CV (3.4) BS02 rna ? GO:0003723 ... Q72IA7 23824292
    152 4v9q:CW (3.4) BS01 rna ? GO:0003735 ... Q72HR3 23824292
    153 4v9q:CW (3.4) BS02 rna ? GO:0003735 ... Q72HR3 23824292
    154 4v9q:CW (3.4) BS03 MG ? GO:0003735 ... Q72HR3 23824292
    155 4v9q:CX (3.4) BS01 rna ? GO:0005840 ... Q72G84 23824292
    156 4v9q:CY (3.4) BS01 rna ? GO:0003735 ... Q72I12 23824292
    157 4v9q:CY (3.4) BS02 MG ? GO:0003735 ... Q72I12 23824292
    158 4v9q:CY (3.4) BS03 MG ? GO:0003735 ... Q72I12 23824292
    159 4v9q:CZ (3.4) BS01 rna ? GO:0003735 ... Q72I22 23824292
    160 4v9q:CZ (3.4) BS02 rna ? GO:0003735 ... Q72I22 23824292
    161 4v9q:DB (3.4) BS01 rna ? GO:0003735 ... P62662 23824292
    162 4v9q:DC (3.4) BS01 rna ? GO:0003676 ... P62663 23824292
    163 4v9q:DC (3.4) BS02 MG ? GO:0003676 ... P62663 23824292
    164 4v9q:DD (3.4) BS01 rna ? GO:0003723 ... P62664 23824292
    165 4v9q:DD (3.4) BS02 MG ? GO:0003723 ... P62664 23824292
    166 4v9q:DE (3.4) BS01 rna ? GO:0003723 ... P62665 23824292
    167 4v9q:DE (3.4) BS02 MG ? GO:0003723 ... P62665 23824292
    168 4v9q:DF (3.4) BS01 rna ? GO:0003735 ... P62666 23824292
    169 4v9q:DG (3.4) BS01 rna ? GO:0000028 ... P62667 23824292
    170 4v9q:DG (3.4) BS02 rna ? GO:0000028 ... P62667 23824292
    171 4v9q:DG (3.4) BS03 MG ? GO:0000028 ... P62667 23824292
    172 4v9q:DG (3.4) BS04 MG ? GO:0000028 ... P62667 23824292
    173 4v9q:DH (3.4) BS01 rna ? GO:0003735 ... P62668 23824292
    174 4v9q:DH (3.4) BS02 MG ? GO:0003735 ... P62668 23824292
    175 4v9q:DI (3.4) BS01 rna ? GO:0000049 ... P62669 23824292
    176 4v9q:DI (3.4) BS02 rna ? GO:0000049 ... P62669 23824292
    177 4v9q:DJ (3.4) BS01 rna ? GO:0000049 ... P62653 23824292
    178 4v9q:DJ (3.4) BS02 MG ? GO:0000049 ... P62653 23824292
    179 4v9q:DK (3.4) BS01 rna ? GO:0003735 ... P62654 23824292
    180 4v9q:DL (3.4) BS01 rna ? GO:0000049 ... P61941 23824292
    181 4v9q:DL (3.4) BS02 MG ? GO:0000049 ... P61941 23824292
    182 4v9q:DM (3.4) BS01 rna ? GO:0000049 ... P62655 23824292
    183 4v9q:DN (3.4) BS01 rna ? GO:0003735 ... P62656 23824292
    184 4v9q:DN (3.4) BS02 ZN ? GO:0003735 ... P62656 23824292
    185 4v9q:DO (3.4) BS01 rna ? GO:0003735 ... P62657 23824292
    186 4v9q:DO (3.4) BS02 rna ? GO:0003735 ... P62657 23824292
    187 4v9q:DP (3.4) BS01 rna ? GO:0003735 ... P62238 23824292
    188 4v9q:DQ (3.4) BS01 rna ? GO:0003735 ... P62658 23824292
    189 4v9q:DR (3.4) BS01 rna ? GO:0003735 ... P62659 23824292
    190 4v9q:DR (3.4) BS02 MG ? GO:0003735 ... P62659 23824292
    191 4v9q:DR (3.4) BS03 MG ? GO:0003735 ... P62659 23824292
    192 4v9q:DS (3.4) BS01 rna ? GO:0003723 ... P62660 23824292
    193 4v9q:DT (3.4) BS01 rna ? GO:0003723 ... P62661 23824292
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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