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BioLiP
Download all results in tab-seperated text for 118 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v57:AB (3.5) BS01 rna ? GO:0000028 ... P0A7V0 17696316
    2 4v57:AC (3.5) BS01 rna ? GO:0000028 ... P0A7V3 17696316
    3 4v57:AD (3.5) BS01 rna ? GO:0000028 ... P0A7V8 17696316
    4 4v57:AE (3.5) BS01 rna ? GO:0000028 ... P0A7W1 17696316
    5 4v57:AF (3.5) BS01 rna ? GO:0002181 ... P02358 17696316
    6 4v57:AG (3.5) BS01 rna ? GO:0000028 ... P02359 17696316
    7 4v57:AH (3.5) BS01 rna ? GO:0000028 ... P0A7W7 17696316
    8 4v57:AI (3.5) BS01 rna ? GO:0000049 ... P0A7X3 17696316
    9 4v57:AJ (3.5) BS01 rna ? GO:0000049 ... P0A7R5 17696316
    10 4v57:AK (3.5) BS01 rna ? GO:0002181 ... P0A7R9 17696316
    11 4v57:AL (3.5) BS01 rna ? GO:0000049 ... P0A7S3 17696316
    12 4v57:AM (3.5) BS01 rna ? GO:0000049 ... P0A7S9 17696316
    13 4v57:AN (3.5) BS01 rna ? GO:0000028 ... P0AG59 17696316
    14 4v57:AO (3.5) BS01 rna ? GO:0000028 ... P0ADZ4 17696316
    15 4v57:AO (3.5) BS02 rna ? GO:0000028 ... P0ADZ4 17696316
    16 4v57:AP (3.5) BS01 rna ? GO:0000028 ... P0A7T3 17696316
    17 4v57:AQ (3.5) BS01 rna ? GO:0000028 ... P0AG63 17696316
    18 4v57:AR (3.5) BS01 rna ? GO:0002181 ... P0A7T7 17696316
    19 4v57:AS (3.5) BS01 rna ? GO:0000028 ... P0A7U3 17696316
    20 4v57:AT (3.5) BS01 rna ? GO:0000028 ... P0A7U7 17696316
    21 4v57:AU (3.5) BS01 rna ? GO:0000028 ... P68679 17696316
    22 4v57:B0 (3.5) BS01 rna ? GO:0000027 ... P0A7N4 17696316
    23 4v57:B1 (3.5) BS01 rna ? GO:0000027 ... P0A7N9 17696316
    24 4v57:B2 (3.5) BS01 rna ? GO:0002181 ... P0A7P5 17696316
    25 4v57:B3 (3.5) BS01 rna ? GO:0002181 ... P0A7Q1 17696316
    26 4v57:B4 (3.5) BS01 rna ? GO:0002181 ... P0A7Q6 17696316
    27 4v57:B4 (3.5) BS02 ZN ? GO:0002181 ... P0A7Q6 17696316
    28 4v57:BC (3.5) BS01 rna ? GO:0000027 ... P60422 17696316
    29 4v57:BD (3.5) BS01 rna ? GO:0000027 ... P60438 17696316
    30 4v57:BE (3.5) BS01 rna ? GO:0001070 ... P60723 17696316
    31 4v57:BF (3.5) BS01 rna ? GO:0000027 ... P62399 17696316
    32 4v57:BF (3.5) BS02 rna ? GO:0000027 ... P62399 17696316
    33 4v57:BG (3.5) BS01 rna ? GO:0000027 ... P0AG55 17696316
    34 4v57:BH (3.5) BS01 rna ? GO:0002181 ... P0A7R1 17696316
    35 4v57:BH (3.5) BS02 rna ? GO:0002181 ... P0A7R1 17696316
    36 4v57:BI (3.5) BS01 rna ? GO:0000027 ... P0A7J7 17696316
    37 4v57:BJ (3.5) BS01 rna ? GO:0002181 ... P0AA10 17696316
    38 4v57:BK (3.5) BS01 rna ? GO:0002181 ... P0ADY3 17696316
    39 4v57:BK (3.5) BS02 rna ? GO:0002181 ... P0ADY3 17696316
    40 4v57:BL (3.5) BS01 rna ? GO:0002181 ... P02413 17696316
    41 4v57:BM (3.5) BS01 rna ? GO:0000027 ... P0ADY7 17696316
    42 4v57:BM (3.5) BS02 rna ? GO:0000027 ... P0ADY7 17696316
    43 4v57:BN (3.5) BS01 rna ? GO:0000027 ... P0AG44 17696316
    44 4v57:BO (3.5) BS01 rna ? GO:0002181 ... P0C018 17696316
    45 4v57:BO (3.5) BS02 rna ? GO:0002181 ... P0C018 17696316
    46 4v57:BP (3.5) BS01 rna ? GO:0000027 ... P0A7K6 17696316
    47 4v57:BP (3.5) BS02 rna ? GO:0000027 ... P0A7K6 17696316
    48 4v57:BQ (3.5) BS01 rna ? GO:0000027 ... P0A7L3 17696316
    49 4v57:BR (3.5) BS01 rna ? GO:0002181 ... P0AG48 17696316
    50 4v57:BS (3.5) BS01 rna ? GO:0002181 ... P61175 17696316
    51 4v57:BT (3.5) BS01 rna ? GO:0000027 ... P0ADZ0 17696316
    52 4v57:BU (3.5) BS01 rna ? GO:0000027 ... P60624 17696316
    53 4v57:BV (3.5) BS01 rna ? GO:0000027 ... P68919 17696316
    54 4v57:BV (3.5) BS02 rna ? GO:0000027 ... P68919 17696316
    55 4v57:BW (3.5) BS01 rna ? GO:0000027 ... P0A7L8 17696316
    56 4v57:BW (3.5) BS02 rna ? GO:0000027 ... P0A7L8 17696316
    57 4v57:BX (3.5) BS01 rna ? GO:0000027 ... P0A7M6 17696316
    58 4v57:BY (3.5) BS01 rna ? GO:0000027 ... P0AG51 17696316
    59 4v57:BY (3.5) BS02 rna ? GO:0000027 ... P0AG51 17696316
    60 4v57:BZ (3.5) BS01 rna ? GO:0000027 ... P0A7M2 17696316
    61 4v57:CB (3.5) BS01 rna ? GO:0000028 ... P0A7V0 17696316
    62 4v57:CC (3.5) BS01 rna ? GO:0000028 ... P0A7V3 17696316
    63 4v57:CD (3.5) BS01 rna ? GO:0000028 ... P0A7V8 17696316
    64 4v57:CE (3.5) BS01 rna ? GO:0000028 ... P0A7W1 17696316
    65 4v57:CF (3.5) BS01 rna ? GO:0002181 ... P02358 17696316
    66 4v57:CG (3.5) BS01 rna ? GO:0000028 ... P02359 17696316
    67 4v57:CH (3.5) BS01 rna ? GO:0000028 ... P0A7W7 17696316
    68 4v57:CI (3.5) BS01 rna ? GO:0000049 ... P0A7X3 17696316
    69 4v57:CJ (3.5) BS01 rna ? GO:0000049 ... P0A7R5 17696316
    70 4v57:CJ (3.5) BS02 rna ? GO:0000049 ... P0A7R5 17696316
    71 4v57:CK (3.5) BS01 rna ? GO:0002181 ... P0A7R9 17696316
    72 4v57:CL (3.5) BS01 rna ? GO:0000049 ... P0A7S3 17696316
    73 4v57:CM (3.5) BS01 rna ? GO:0000049 ... P0A7S9 17696316
    74 4v57:CN (3.5) BS01 rna ? GO:0000028 ... P0AG59 17696316
    75 4v57:CO (3.5) BS01 rna ? GO:0000028 ... P0ADZ4 17696316
    76 4v57:CP (3.5) BS01 rna ? GO:0000028 ... P0A7T3 17696316
    77 4v57:CQ (3.5) BS01 rna ? GO:0000028 ... P0AG63 17696316
    78 4v57:CR (3.5) BS01 rna ? GO:0002181 ... P0A7T7 17696316
    79 4v57:CS (3.5) BS01 rna ? GO:0000028 ... P0A7U3 17696316
    80 4v57:CT (3.5) BS01 rna ? GO:0000028 ... P0A7U7 17696316
    81 4v57:CU (3.5) BS01 rna ? GO:0000028 ... P68679 17696316
    82 4v57:D0 (3.5) BS01 rna ? GO:0000027 ... P0A7N4 17696316
    83 4v57:D1 (3.5) BS01 rna ? GO:0000027 ... P0A7N9 17696316
    84 4v57:D2 (3.5) BS01 rna ? GO:0002181 ... P0A7P5 17696316
    85 4v57:D3 (3.5) BS01 rna ? GO:0002181 ... P0A7Q1 17696316
    86 4v57:D4 (3.5) BS01 rna ? GO:0002181 ... P0A7Q6 17696316
    87 4v57:D4 (3.5) BS02 ZN ? GO:0002181 ... P0A7Q6 17696316
    88 4v57:DC (3.5) BS01 rna ? GO:0000027 ... P60422 17696316
    89 4v57:DD (3.5) BS01 rna ? GO:0000027 ... P60438 17696316
    90 4v57:DE (3.5) BS01 rna ? GO:0001070 ... P60723 17696316
    91 4v57:DF (3.5) BS01 rna ? GO:0000027 ... P62399 17696316
    92 4v57:DF (3.5) BS02 rna ? GO:0000027 ... P62399 17696316
    93 4v57:DG (3.5) BS01 rna ? GO:0000027 ... P0AG55 17696316
    94 4v57:DH (3.5) BS01 rna ? GO:0002181 ... P0A7R1 17696316
    95 4v57:DI (3.5) BS01 rna ? GO:0000027 ... P0A7J7 17696316
    96 4v57:DJ (3.5) BS01 rna ? GO:0002181 ... P0AA10 17696316
    97 4v57:DK (3.5) BS01 rna ? GO:0002181 ... P0ADY3 17696316
    98 4v57:DK (3.5) BS02 rna ? GO:0002181 ... P0ADY3 17696316
    99 4v57:DL (3.5) BS01 rna ? GO:0002181 ... P02413 17696316
    100 4v57:DM (3.5) BS01 rna ? GO:0000027 ... P0ADY7 17696316
    101 4v57:DM (3.5) BS02 rna ? GO:0000027 ... P0ADY7 17696316
    102 4v57:DN (3.5) BS01 rna ? GO:0000027 ... P0AG44 17696316
    103 4v57:DO (3.5) BS01 rna ? GO:0002181 ... P0C018 17696316
    104 4v57:DO (3.5) BS02 rna ? GO:0002181 ... P0C018 17696316
    105 4v57:DP (3.5) BS01 rna ? GO:0000027 ... P0A7K6 17696316
    106 4v57:DP (3.5) BS02 rna ? GO:0000027 ... P0A7K6 17696316
    107 4v57:DQ (3.5) BS01 rna ? GO:0000027 ... P0A7L3 17696316
    108 4v57:DR (3.5) BS01 rna ? GO:0002181 ... P0AG48 17696316
    109 4v57:DS (3.5) BS01 rna ? GO:0002181 ... P61175 17696316
    110 4v57:DT (3.5) BS01 rna ? GO:0000027 ... P0ADZ0 17696316
    111 4v57:DU (3.5) BS01 rna ? GO:0000027 ... P60624 17696316
    112 4v57:DV (3.5) BS01 rna ? GO:0000027 ... P68919 17696316
    113 4v57:DW (3.5) BS01 rna ? GO:0000027 ... P0A7L8 17696316
    114 4v57:DW (3.5) BS02 rna ? GO:0000027 ... P0A7L8 17696316
    115 4v57:DX (3.5) BS01 rna ? GO:0000027 ... P0A7M6 17696316
    116 4v57:DY (3.5) BS01 rna ? GO:0000027 ... P0AG51 17696316
    117 4v57:DY (3.5) BS02 rna ? GO:0000027 ... P0AG51 17696316
    118 4v57:DZ (3.5) BS01 rna ? GO:0000027 ... P0A7M2 17696316
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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