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BioLiP
Download all results in tab-seperated text for 130 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4rvy:A (5.5) BS01 OEX 1.10.3.9 GO:0005506 ... P0A444 25043005
    2 4rvy:A (5.5) BS02 FE2 1.10.3.9 GO:0005506 ... P0A444 25043005
    3 4rvy:A (5.5) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 25043005
    4 4rvy:A (5.5) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 25043005
    5 4rvy:A (5.5) BS05 PHO 1.10.3.9 GO:0005506 ... P0A444 25043005
    6 4rvy:A (5.5) BS06 PHO 1.10.3.9 GO:0005506 ... P0A444 25043005
    7 4rvy:A (5.5) BS07 CLA 1.10.3.9 GO:0005506 ... P0A444 25043005
    8 4rvy:A (5.5) BS08 BCT 1.10.3.9 GO:0005506 ... P0A444 25043005
    9 4rvy:A (5.5) BS09 CLA 1.10.3.9 GO:0005506 ... P0A444 25043005
    10 4rvy:A (5.5) BS10 CLA 1.10.3.9 GO:0005506 ... P0A444 25043005
    11 4rvy:B (5.5) BS01 CLA ? GO:0009521 ... Q8DIQ1 25043005
    12 4rvy:B (5.5) BS02 CLA ? GO:0009521 ... Q8DIQ1 25043005
    13 4rvy:B (5.5) BS03 CLA ? GO:0009521 ... Q8DIQ1 25043005
    14 4rvy:B (5.5) BS04 CLA ? GO:0009521 ... Q8DIQ1 25043005
    15 4rvy:B (5.5) BS05 CLA ? GO:0009521 ... Q8DIQ1 25043005
    16 4rvy:B (5.5) BS06 CLA ? GO:0009521 ... Q8DIQ1 25043005
    17 4rvy:B (5.5) BS07 CLA ? GO:0009521 ... Q8DIQ1 25043005
    18 4rvy:B (5.5) BS08 CLA ? GO:0009521 ... Q8DIQ1 25043005
    19 4rvy:B (5.5) BS09 CLA ? GO:0009521 ... Q8DIQ1 25043005
    20 4rvy:B (5.5) BS10 CLA ? GO:0009521 ... Q8DIQ1 25043005
    21 4rvy:B (5.5) BS11 CLA ? GO:0009521 ... Q8DIQ1 25043005
    22 4rvy:B (5.5) BS12 CLA ? GO:0009521 ... Q8DIQ1 25043005
    23 4rvy:B (5.5) BS13 CLA ? GO:0009521 ... Q8DIQ1 25043005
    24 4rvy:B (5.5) BS14 CLA ? GO:0009521 ... Q8DIQ1 25043005
    25 4rvy:B (5.5) BS15 CLA ? GO:0009521 ... Q8DIQ1 25043005
    26 4rvy:B (5.5) BS16 CLA ? GO:0009521 ... Q8DIQ1 25043005
    27 4rvy:C (5.5) BS01 OEX ? GO:0005737 ... Q8DIF8 25043005
    28 4rvy:C (5.5) BS02 CLA ? GO:0005737 ... Q8DIF8 25043005
    29 4rvy:C (5.5) BS03 CLA ? GO:0005737 ... Q8DIF8 25043005
    30 4rvy:C (5.5) BS04 CLA ? GO:0005737 ... Q8DIF8 25043005
    31 4rvy:C (5.5) BS05 CLA ? GO:0005737 ... Q8DIF8 25043005
    32 4rvy:C (5.5) BS06 CLA ? GO:0005737 ... Q8DIF8 25043005
    33 4rvy:C (5.5) BS07 CLA ? GO:0005737 ... Q8DIF8 25043005
    34 4rvy:C (5.5) BS08 CLA ? GO:0005737 ... Q8DIF8 25043005
    35 4rvy:C (5.5) BS09 CLA ? GO:0005737 ... Q8DIF8 25043005
    36 4rvy:C (5.5) BS10 CLA ? GO:0005737 ... Q8DIF8 25043005
    37 4rvy:C (5.5) BS11 CLA ? GO:0005737 ... Q8DIF8 25043005
    38 4rvy:C (5.5) BS12 CLA ? GO:0005737 ... Q8DIF8 25043005
    39 4rvy:C (5.5) BS13 CLA ? GO:0005737 ... Q8DIF8 25043005
    40 4rvy:C (5.5) BS14 CLA ? GO:0005737 ... Q8DIF8 25043005
    41 4rvy:D (5.5) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 25043005
    42 4rvy:D (5.5) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25043005
    43 4rvy:D (5.5) BS03 PHO 1.10.3.9 GO:0005506 ... Q8CM25 25043005
    44 4rvy:D (5.5) BS04 PHO 1.10.3.9 GO:0005506 ... Q8CM25 25043005
    45 4rvy:D (5.5) BS05 BCT 1.10.3.9 GO:0005506 ... Q8CM25 25043005
    46 4rvy:D (5.5) BS06 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25043005
    47 4rvy:D (5.5) BS07 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25043005
    48 4rvy:D (5.5) BS08 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25043005
    49 4rvy:D (5.5) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25043005
    50 4rvy:E (5.5) BS01 HEM ? GO:0005506 ... Q8DIP0 25043005
    51 4rvy:F (5.5) BS01 HEM ? GO:0009523 ... Q8DIN9 25043005
    52 4rvy:H (5.5) BS01 CLA ? GO:0009523 ... Q8DJ43 25043005
    53 4rvy:H (5.5) BS02 CLA ? GO:0009523 ... Q8DJ43 25043005
    54 4rvy:H (5.5) BS03 CLA ? GO:0009523 ... Q8DJ43 25043005
    55 4rvy:I (5.5) BS01 CLA ? GO:0005737 ... Q8DJZ6 25043005
    56 4rvy:J (5.5) BS01 peptide ? GO:0009523 ... P59087 25043005
    57 4rvy:J (5.5) BS02 MG ? GO:0009523 ... P59087 25043005
    58 4rvy:K (5.5) BS01 peptide ? GO:0009523 ... Q9F1K9 25043005
    59 4rvy:K (5.5) BS02 CLA ? GO:0009523 ... Q9F1K9 25043005
    60 4rvy:K (5.5) BS03 CLA ? GO:0009523 ... Q9F1K9 25043005
    61 4rvy:O (5.5) BS01 CA ? GO:0009523 ... P0A431 25043005
    62 4rvy:V (5.5) BS01 HEM ? GO:0005506 ... P0A386 25043005
    63 4rvy:X (5.5) BS01 CLA ? GO:0009523 ... Q9F1R6 25043005
    64 4rvy:Z (5.5) BS01 peptide ? GO:0009523 ... Q8DHJ2 25043005
    65 4rvy:Z (5.5) BS02 CLA ? GO:0009523 ... Q8DHJ2 25043005
    66 4rvy:a (5.5) BS01 OEX 1.10.3.9 GO:0005506 ... P0A444 25043005
    67 4rvy:a (5.5) BS02 FE2 1.10.3.9 GO:0005506 ... P0A444 25043005
    68 4rvy:a (5.5) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 25043005
    69 4rvy:a (5.5) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 25043005
    70 4rvy:a (5.5) BS05 PHO 1.10.3.9 GO:0005506 ... P0A444 25043005
    71 4rvy:a (5.5) BS06 PHO 1.10.3.9 GO:0005506 ... P0A444 25043005
    72 4rvy:a (5.5) BS07 CLA 1.10.3.9 GO:0005506 ... P0A444 25043005
    73 4rvy:a (5.5) BS08 BCT 1.10.3.9 GO:0005506 ... P0A444 25043005
    74 4rvy:a (5.5) BS09 CLA 1.10.3.9 GO:0005506 ... P0A444 25043005
    75 4rvy:a (5.5) BS10 CLA 1.10.3.9 GO:0005506 ... P0A444 25043005
    76 4rvy:b (5.5) BS01 CLA ? GO:0009521 ... Q8DIQ1 25043005
    77 4rvy:b (5.5) BS02 CLA ? GO:0009521 ... Q8DIQ1 25043005
    78 4rvy:b (5.5) BS03 CLA ? GO:0009521 ... Q8DIQ1 25043005
    79 4rvy:b (5.5) BS04 CLA ? GO:0009521 ... Q8DIQ1 25043005
    80 4rvy:b (5.5) BS05 CLA ? GO:0009521 ... Q8DIQ1 25043005
    81 4rvy:b (5.5) BS06 CLA ? GO:0009521 ... Q8DIQ1 25043005
    82 4rvy:b (5.5) BS07 CLA ? GO:0009521 ... Q8DIQ1 25043005
    83 4rvy:b (5.5) BS08 CLA ? GO:0009521 ... Q8DIQ1 25043005
    84 4rvy:b (5.5) BS09 CLA ? GO:0009521 ... Q8DIQ1 25043005
    85 4rvy:b (5.5) BS10 CLA ? GO:0009521 ... Q8DIQ1 25043005
    86 4rvy:b (5.5) BS11 CLA ? GO:0009521 ... Q8DIQ1 25043005
    87 4rvy:b (5.5) BS12 CLA ? GO:0009521 ... Q8DIQ1 25043005
    88 4rvy:b (5.5) BS13 CLA ? GO:0009521 ... Q8DIQ1 25043005
    89 4rvy:b (5.5) BS14 CLA ? GO:0009521 ... Q8DIQ1 25043005
    90 4rvy:b (5.5) BS15 CLA ? GO:0009521 ... Q8DIQ1 25043005
    91 4rvy:b (5.5) BS16 CLA ? GO:0009521 ... Q8DIQ1 25043005
    92 4rvy:c (5.5) BS01 OEX ? GO:0005737 ... Q8DIF8 25043005
    93 4rvy:c (5.5) BS02 CLA ? GO:0005737 ... Q8DIF8 25043005
    94 4rvy:c (5.5) BS03 CLA ? GO:0005737 ... Q8DIF8 25043005
    95 4rvy:c (5.5) BS04 CLA ? GO:0005737 ... Q8DIF8 25043005
    96 4rvy:c (5.5) BS05 CLA ? GO:0005737 ... Q8DIF8 25043005
    97 4rvy:c (5.5) BS06 CLA ? GO:0005737 ... Q8DIF8 25043005
    98 4rvy:c (5.5) BS07 CLA ? GO:0005737 ... Q8DIF8 25043005
    99 4rvy:c (5.5) BS08 CLA ? GO:0005737 ... Q8DIF8 25043005
    100 4rvy:c (5.5) BS09 CLA ? GO:0005737 ... Q8DIF8 25043005
    101 4rvy:c (5.5) BS10 CLA ? GO:0005737 ... Q8DIF8 25043005
    102 4rvy:c (5.5) BS11 CLA ? GO:0005737 ... Q8DIF8 25043005
    103 4rvy:c (5.5) BS12 CLA ? GO:0005737 ... Q8DIF8 25043005
    104 4rvy:c (5.5) BS13 CLA ? GO:0005737 ... Q8DIF8 25043005
    105 4rvy:c (5.5) BS14 CLA ? GO:0005737 ... Q8DIF8 25043005
    106 4rvy:d (5.5) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 25043005
    107 4rvy:d (5.5) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25043005
    108 4rvy:d (5.5) BS03 PHO 1.10.3.9 GO:0005506 ... Q8CM25 25043005
    109 4rvy:d (5.5) BS04 PHO 1.10.3.9 GO:0005506 ... Q8CM25 25043005
    110 4rvy:d (5.5) BS05 BCT 1.10.3.9 GO:0005506 ... Q8CM25 25043005
    111 4rvy:d (5.5) BS06 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25043005
    112 4rvy:d (5.5) BS07 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25043005
    113 4rvy:d (5.5) BS08 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25043005
    114 4rvy:d (5.5) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25043005
    115 4rvy:e (5.5) BS01 HEM ? GO:0005506 ... Q8DIP0 25043005
    116 4rvy:f (5.5) BS01 HEM ? GO:0009523 ... Q8DIN9 25043005
    117 4rvy:h (5.5) BS01 CLA ? GO:0009523 ... Q8DJ43 25043005
    118 4rvy:h (5.5) BS02 CLA ? GO:0009523 ... Q8DJ43 25043005
    119 4rvy:h (5.5) BS03 CLA ? GO:0009523 ... Q8DJ43 25043005
    120 4rvy:i (5.5) BS01 CLA ? GO:0005737 ... Q8DJZ6 25043005
    121 4rvy:j (5.5) BS01 peptide ? GO:0009523 ... P59087 25043005
    122 4rvy:j (5.5) BS02 MG ? GO:0009523 ... P59087 25043005
    123 4rvy:k (5.5) BS01 peptide ? GO:0009523 ... Q9F1K9 25043005
    124 4rvy:k (5.5) BS02 CLA ? GO:0009523 ... Q9F1K9 25043005
    125 4rvy:k (5.5) BS03 CLA ? GO:0009523 ... Q9F1K9 25043005
    126 4rvy:o (5.5) BS01 CA ? GO:0009523 ... P0A431 25043005
    127 4rvy:v (5.5) BS01 HEM ? GO:0005506 ... P0A386 25043005
    128 4rvy:x (5.5) BS01 CLA ? GO:0009523 ... Q9F1R6 25043005
    129 4rvy:z (5.5) BS01 peptide ? GO:0009523 ... Q8DHJ2 25043005
    130 4rvy:z (5.5) BS02 CLA ? GO:0009523 ... Q8DHJ2 25043005
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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