Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 126 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4ixr:A (5.9) BS01 FE2 1.10.3.9 GO:0005506 ... P0A444 23413188
    2 4ixr:A (5.9) BS02 BCT 1.10.3.9 GO:0005506 ... P0A444 23413188
    3 4ixr:A (5.9) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 23413188
    4 4ixr:A (5.9) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 23413188
    5 4ixr:A (5.9) BS05 CLA 1.10.3.9 GO:0005506 ... P0A444 23413188
    6 4ixr:A (5.9) BS06 PHO 1.10.3.9 GO:0005506 ... P0A444 23413188
    7 4ixr:A (5.9) BS07 CLA 1.10.3.9 GO:0005506 ... P0A444 23413188
    8 4ixr:A (5.9) BS08 OEC 1.10.3.9 GO:0005506 ... P0A444 23413188
    9 4ixr:A (5.9) BS09 CLA 1.10.3.9 GO:0005506 ... P0A444 23413188
    10 4ixr:A (5.9) BS10 PHO 1.10.3.9 GO:0005506 ... P0A444 23413188
    11 4ixr:B (5.9) BS01 CLA ? GO:0009521 ... Q8DIQ1 23413188
    12 4ixr:B (5.9) BS02 CLA ? GO:0009521 ... Q8DIQ1 23413188
    13 4ixr:B (5.9) BS03 CLA ? GO:0009521 ... Q8DIQ1 23413188
    14 4ixr:B (5.9) BS04 CLA ? GO:0009521 ... Q8DIQ1 23413188
    15 4ixr:B (5.9) BS05 CLA ? GO:0009521 ... Q8DIQ1 23413188
    16 4ixr:B (5.9) BS06 CLA ? GO:0009521 ... Q8DIQ1 23413188
    17 4ixr:B (5.9) BS07 CLA ? GO:0009521 ... Q8DIQ1 23413188
    18 4ixr:B (5.9) BS08 CLA ? GO:0009521 ... Q8DIQ1 23413188
    19 4ixr:B (5.9) BS09 CLA ? GO:0009521 ... Q8DIQ1 23413188
    20 4ixr:B (5.9) BS10 CLA ? GO:0009521 ... Q8DIQ1 23413188
    21 4ixr:B (5.9) BS11 CLA ? GO:0009521 ... Q8DIQ1 23413188
    22 4ixr:B (5.9) BS12 CLA ? GO:0009521 ... Q8DIQ1 23413188
    23 4ixr:B (5.9) BS13 CLA ? GO:0009521 ... Q8DIQ1 23413188
    24 4ixr:B (5.9) BS14 CLA ? GO:0009521 ... Q8DIQ1 23413188
    25 4ixr:B (5.9) BS15 CLA ? GO:0009521 ... Q8DIQ1 23413188
    26 4ixr:B (5.9) BS16 CLA ? GO:0009521 ... Q8DIQ1 23413188
    27 4ixr:C (5.9) BS01 CLA ? GO:0005737 ... Q8DIF8 23413188
    28 4ixr:C (5.9) BS02 CLA ? GO:0005737 ... Q8DIF8 23413188
    29 4ixr:C (5.9) BS03 CLA ? GO:0005737 ... Q8DIF8 23413188
    30 4ixr:C (5.9) BS04 CLA ? GO:0005737 ... Q8DIF8 23413188
    31 4ixr:C (5.9) BS05 CLA ? GO:0005737 ... Q8DIF8 23413188
    32 4ixr:C (5.9) BS06 CLA ? GO:0005737 ... Q8DIF8 23413188
    33 4ixr:C (5.9) BS07 CLA ? GO:0005737 ... Q8DIF8 23413188
    34 4ixr:C (5.9) BS08 CLA ? GO:0005737 ... Q8DIF8 23413188
    35 4ixr:C (5.9) BS09 CLA ? GO:0005737 ... Q8DIF8 23413188
    36 4ixr:C (5.9) BS10 CLA ? GO:0005737 ... Q8DIF8 23413188
    37 4ixr:C (5.9) BS11 CLA ? GO:0005737 ... Q8DIF8 23413188
    38 4ixr:C (5.9) BS12 CLA ? GO:0005737 ... Q8DIF8 23413188
    39 4ixr:C (5.9) BS13 CLA ? GO:0005737 ... Q8DIF8 23413188
    40 4ixr:D (5.9) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    41 4ixr:D (5.9) BS02 BCT 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    42 4ixr:D (5.9) BS03 CLA 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    43 4ixr:D (5.9) BS04 CLA 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    44 4ixr:D (5.9) BS05 PHO 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    45 4ixr:D (5.9) BS06 CLA 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    46 4ixr:D (5.9) BS07 CLA 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    47 4ixr:D (5.9) BS08 PHO 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    48 4ixr:D (5.9) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    49 4ixr:E (5.9) BS01 peptide ? GO:0005506 ... Q8DIP0 23413188
    50 4ixr:E (5.9) BS02 HEM ? GO:0005506 ... Q8DIP0 23413188
    51 4ixr:F (5.9) BS01 HEM ? GO:0005506 ... Q8DIN9 23413188
    52 4ixr:H (5.9) BS01 CLA ? GO:0009523 ... Q8DJ43 23413188
    53 4ixr:H (5.9) BS02 CLA ? GO:0009523 ... Q8DJ43 23413188
    54 4ixr:H (5.9) BS03 CLA ? GO:0009523 ... Q8DJ43 23413188
    55 4ixr:H (5.9) BS04 CLA ? GO:0009523 ... Q8DJ43 23413188
    56 4ixr:I (5.9) BS01 CLA ? GO:0005737 ... Q8DJZ6 23413188
    57 4ixr:K (5.9) BS01 peptide ? GO:0005737 ... Q9F1K9 23413188
    58 4ixr:K (5.9) BS02 CLA ? GO:0005737 ... Q9F1K9 23413188
    59 4ixr:K (5.9) BS03 CA ? GO:0005737 ... Q9F1K9 23413188
    60 4ixr:O (5.9) BS01 CA ? GO:0009654 ... P0A431 23413188
    61 4ixr:V (5.9) BS01 HEM ? GO:0005506 ... P0A386 23413188
    62 4ixr:X (5.9) BS01 CLA ? GO:0009523 ... Q9F1R6 23413188
    63 4ixr:Z (5.9) BS01 peptide ? GO:0009523 ... Q8DHJ2 23413188
    64 4ixr:Z (5.9) BS02 CLA ? GO:0009523 ... Q8DHJ2 23413188
    65 4ixr:a (5.9) BS01 FE2 1.10.3.9 GO:0005506 ... P0A444 23413188
    66 4ixr:a (5.9) BS02 CLA 1.10.3.9 GO:0005506 ... P0A444 23413188
    67 4ixr:a (5.9) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 23413188
    68 4ixr:a (5.9) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 23413188
    69 4ixr:a (5.9) BS05 PHO 1.10.3.9 GO:0005506 ... P0A444 23413188
    70 4ixr:a (5.9) BS06 PHO 1.10.3.9 GO:0005506 ... P0A444 23413188
    71 4ixr:a (5.9) BS07 CLA 1.10.3.9 GO:0005506 ... P0A444 23413188
    72 4ixr:a (5.9) BS08 OEC 1.10.3.9 GO:0005506 ... P0A444 23413188
    73 4ixr:a (5.9) BS09 CLA 1.10.3.9 GO:0005506 ... P0A444 23413188
    74 4ixr:a (5.9) BS10 BCT 1.10.3.9 GO:0005506 ... P0A444 23413188
    75 4ixr:b (5.9) BS01 CLA ? GO:0009521 ... Q8DIQ1 23413188
    76 4ixr:b (5.9) BS02 CLA ? GO:0009521 ... Q8DIQ1 23413188
    77 4ixr:b (5.9) BS03 CLA ? GO:0009521 ... Q8DIQ1 23413188
    78 4ixr:b (5.9) BS04 CLA ? GO:0009521 ... Q8DIQ1 23413188
    79 4ixr:b (5.9) BS05 CLA ? GO:0009521 ... Q8DIQ1 23413188
    80 4ixr:b (5.9) BS06 CLA ? GO:0009521 ... Q8DIQ1 23413188
    81 4ixr:b (5.9) BS07 CLA ? GO:0009521 ... Q8DIQ1 23413188
    82 4ixr:b (5.9) BS08 CLA ? GO:0009521 ... Q8DIQ1 23413188
    83 4ixr:b (5.9) BS09 CLA ? GO:0009521 ... Q8DIQ1 23413188
    84 4ixr:b (5.9) BS10 CLA ? GO:0009521 ... Q8DIQ1 23413188
    85 4ixr:b (5.9) BS11 CLA ? GO:0009521 ... Q8DIQ1 23413188
    86 4ixr:b (5.9) BS12 CLA ? GO:0009521 ... Q8DIQ1 23413188
    87 4ixr:b (5.9) BS13 CLA ? GO:0009521 ... Q8DIQ1 23413188
    88 4ixr:b (5.9) BS14 CLA ? GO:0009521 ... Q8DIQ1 23413188
    89 4ixr:b (5.9) BS15 CLA ? GO:0009521 ... Q8DIQ1 23413188
    90 4ixr:b (5.9) BS16 CLA ? GO:0009521 ... Q8DIQ1 23413188
    91 4ixr:c (5.9) BS01 CLA ? GO:0005737 ... Q8DIF8 23413188
    92 4ixr:c (5.9) BS02 CLA ? GO:0005737 ... Q8DIF8 23413188
    93 4ixr:c (5.9) BS03 CLA ? GO:0005737 ... Q8DIF8 23413188
    94 4ixr:c (5.9) BS04 CLA ? GO:0005737 ... Q8DIF8 23413188
    95 4ixr:c (5.9) BS05 CLA ? GO:0005737 ... Q8DIF8 23413188
    96 4ixr:c (5.9) BS06 CLA ? GO:0005737 ... Q8DIF8 23413188
    97 4ixr:c (5.9) BS07 CLA ? GO:0005737 ... Q8DIF8 23413188
    98 4ixr:c (5.9) BS08 CLA ? GO:0005737 ... Q8DIF8 23413188
    99 4ixr:c (5.9) BS09 CLA ? GO:0005737 ... Q8DIF8 23413188
    100 4ixr:c (5.9) BS10 CLA ? GO:0005737 ... Q8DIF8 23413188
    101 4ixr:c (5.9) BS11 CLA ? GO:0005737 ... Q8DIF8 23413188
    102 4ixr:c (5.9) BS12 CLA ? GO:0005737 ... Q8DIF8 23413188
    103 4ixr:c (5.9) BS13 CLA ? GO:0005737 ... Q8DIF8 23413188
    104 4ixr:d (5.9) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    105 4ixr:d (5.9) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    106 4ixr:d (5.9) BS03 CLA 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    107 4ixr:d (5.9) BS04 PHO 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    108 4ixr:d (5.9) BS05 PHO 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    109 4ixr:d (5.9) BS06 CLA 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    110 4ixr:d (5.9) BS07 BCT 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    111 4ixr:d (5.9) BS08 CLA 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    112 4ixr:d (5.9) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    113 4ixr:e (5.9) BS01 HEM ? GO:0005506 ... Q8DIP0 23413188
    114 4ixr:f (5.9) BS01 HEM ? GO:0005506 ... Q8DIN9 23413188
    115 4ixr:h (5.9) BS01 CLA ? GO:0009523 ... Q8DJ43 23413188
    116 4ixr:h (5.9) BS02 CLA ? GO:0009523 ... Q8DJ43 23413188
    117 4ixr:h (5.9) BS03 CLA ? GO:0009523 ... Q8DJ43 23413188
    118 4ixr:i (5.9) BS01 CLA ? GO:0005737 ... Q8DJZ6 23413188
    119 4ixr:k (5.9) BS01 peptide ? GO:0005737 ... Q9F1K9 23413188
    120 4ixr:k (5.9) BS02 CLA ? GO:0005737 ... Q9F1K9 23413188
    121 4ixr:k (5.9) BS03 CLA ? GO:0005737 ... Q9F1K9 23413188
    122 4ixr:k (5.9) BS04 CA ? GO:0005737 ... Q9F1K9 23413188
    123 4ixr:o (5.9) BS01 CA ? GO:0009654 ... P0A431 23413188
    124 4ixr:v (5.9) BS01 HEM ? GO:0005506 ... P0A386 23413188
    125 4ixr:z (5.9) BS01 peptide ? GO:0009523 ... Q8DHJ2 23413188
    126 4ixr:z (5.9) BS02 CLA ? GO:0009523 ... Q8DHJ2 23413188
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417