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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 389 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 8xlp:N (2.57) BS10 CLA N/A N/A N/A N/A
    202 8xlp:N (2.57) BS11 KC2 N/A N/A N/A N/A
    203 8xlp:N (2.57) BS12 KC2 N/A N/A N/A N/A
    204 8xlp:N (2.57) BS13 KC2 N/A N/A N/A N/A
    205 8xlp:N (2.57) BS14 CLA N/A N/A N/A N/A
    206 8xlp:N (2.57) BS15 CLA N/A N/A N/A N/A
    207 8xlp:N (2.57) BS16 II0 N/A N/A N/A N/A
    208 8xlp:N (2.57) BS17 II0 N/A N/A N/A N/A
    209 8xlp:N (2.57) BS18 II0 N/A N/A N/A N/A
    210 8xlp:N (2.57) BS19 II0 N/A N/A N/A N/A
    211 8xlp:N (2.57) BS20 IHT N/A N/A N/A N/A
    212 8xlp:O (2.57) BS01 CLA N/A N/A N/A N/A
    213 8xlp:O (2.57) BS02 CLA N/A N/A N/A N/A
    214 8xlp:O (2.57) BS03 CLA N/A N/A N/A N/A
    215 8xlp:O (2.57) BS04 CLA N/A N/A N/A N/A
    216 8xlp:O (2.57) BS05 CLA N/A N/A N/A N/A
    217 8xlp:O (2.57) BS06 CLA N/A N/A N/A N/A
    218 8xlp:O (2.57) BS07 CLA N/A N/A N/A N/A
    219 8xlp:O (2.57) BS08 CLA N/A N/A N/A N/A
    220 8xlp:O (2.57) BS09 CLA N/A N/A N/A N/A
    221 8xlp:O (2.57) BS10 KC2 N/A N/A N/A N/A
    222 8xlp:O (2.57) BS11 CLA N/A N/A N/A N/A
    223 8xlp:O (2.57) BS12 CLA N/A N/A N/A N/A
    224 8xlp:O (2.57) BS13 II0 N/A N/A N/A N/A
    225 8xlp:O (2.57) BS14 II0 N/A N/A N/A N/A
    226 8xlp:O (2.57) BS15 II0 N/A N/A N/A N/A
    227 8xlp:O (2.57) BS16 II0 N/A N/A N/A N/A
    228 8xlp:O (2.57) BS17 IHT N/A N/A N/A N/A
    229 8xlp:O (2.57) BS18 II0 N/A N/A N/A N/A
    230 8xlp:P (2.57) BS01 CLA N/A N/A N/A N/A
    231 8xlp:P (2.57) BS02 CLA N/A N/A N/A N/A
    232 8xlp:P (2.57) BS03 CLA N/A N/A N/A N/A
    233 8xlp:P (2.57) BS04 CLA N/A N/A N/A N/A
    234 8xlp:P (2.57) BS05 KC2 N/A N/A N/A N/A
    235 8xlp:P (2.57) BS06 CLA N/A N/A N/A N/A
    236 8xlp:P (2.57) BS07 CLA N/A N/A N/A N/A
    237 8xlp:P (2.57) BS08 CLA N/A N/A N/A N/A
    238 8xlp:P (2.57) BS09 CLA N/A N/A N/A N/A
    239 8xlp:P (2.57) BS10 CLA N/A N/A N/A N/A
    240 8xlp:P (2.57) BS11 CLA N/A N/A N/A N/A
    241 8xlp:P (2.57) BS12 II0 N/A N/A N/A N/A
    242 8xlp:P (2.57) BS13 II0 N/A N/A N/A N/A
    243 8xlp:P (2.57) BS14 II0 N/A N/A N/A N/A
    244 8xlp:P (2.57) BS15 II0 N/A N/A N/A N/A
    245 8xlp:P (2.57) BS16 WVN N/A N/A N/A N/A
    246 8xlp:Q (2.57) BS01 CLA N/A N/A N/A N/A
    247 8xlp:Q (2.57) BS02 CLA N/A N/A N/A N/A
    248 8xlp:Q (2.57) BS03 CLA N/A N/A N/A N/A
    249 8xlp:Q (2.57) BS04 KC2 N/A N/A N/A N/A
    250 8xlp:Q (2.57) BS05 CLA N/A N/A N/A N/A
    251 8xlp:Q (2.57) BS06 CLA N/A N/A N/A N/A
    252 8xlp:Q (2.57) BS07 CLA N/A N/A N/A N/A
    253 8xlp:Q (2.57) BS08 CLA N/A N/A N/A N/A
    254 8xlp:Q (2.57) BS09 KC2 N/A N/A N/A N/A
    255 8xlp:Q (2.57) BS10 CLA N/A N/A N/A N/A
    256 8xlp:Q (2.57) BS11 CLA N/A N/A N/A N/A
    257 8xlp:Q (2.57) BS12 II0 N/A N/A N/A N/A
    258 8xlp:Q (2.57) BS13 II0 N/A N/A N/A N/A
    259 8xlp:Q (2.57) BS14 II0 N/A N/A N/A N/A
    260 8xlp:Q (2.57) BS15 II0 N/A N/A N/A N/A
    261 8xlp:Q (2.57) BS16 IHT N/A N/A N/A N/A
    262 8xlp:Q (2.57) BS17 II0 N/A N/A N/A N/A
    263 8xlp:Q (2.57) BS18 IHT N/A N/A N/A N/A
    264 8xlp:R (2.57) BS01 CLA N/A N/A N/A N/A
    265 8xlp:R (2.57) BS02 CLA N/A N/A N/A N/A
    266 8xlp:R (2.57) BS03 II0 N/A N/A N/A N/A
    267 8xlp:R (2.57) BS04 CLA N/A N/A N/A N/A
    268 8xlp:R (2.57) BS05 CLA N/A N/A N/A N/A
    269 8xlp:R (2.57) BS06 CLA N/A N/A N/A N/A
    270 8xlp:R (2.57) BS07 CLA N/A N/A N/A N/A
    271 8xlp:R (2.57) BS08 CLA N/A N/A N/A N/A
    272 8xlp:R (2.57) BS09 CLA N/A N/A N/A N/A
    273 8xlp:R (2.57) BS10 CLA N/A N/A N/A N/A
    274 8xlp:R (2.57) BS11 CLA N/A N/A N/A N/A
    275 8xlp:R (2.57) BS12 CLA N/A N/A N/A N/A
    276 8xlp:R (2.57) BS13 KC2 N/A N/A N/A N/A
    277 8xlp:R (2.57) BS14 CLA N/A N/A N/A N/A
    278 8xlp:R (2.57) BS15 CLA N/A N/A N/A N/A
    279 8xlp:R (2.57) BS16 II0 N/A N/A N/A N/A
    280 8xlp:R (2.57) BS17 II0 N/A N/A N/A N/A
    281 8xlp:R (2.57) BS18 II0 N/A N/A N/A N/A
    282 8xlp:R (2.57) BS19 II0 N/A N/A N/A N/A
    283 8xlp:R (2.57) BS20 IHT N/A N/A N/A N/A
    284 8xlp:R (2.57) BS21 CLA N/A N/A N/A N/A
    285 8xlp:R (2.57) BS22 II0 N/A N/A N/A N/A
    286 8xlp:S (2.57) BS01 CLA N/A N/A N/A N/A
    287 8xlp:S (2.57) BS02 CLA N/A N/A N/A N/A
    288 8xlp:S (2.57) BS03 CLA N/A N/A N/A N/A
    289 8xlp:S (2.57) BS04 CLA N/A N/A N/A N/A
    290 8xlp:S (2.57) BS05 KC2 N/A N/A N/A N/A
    291 8xlp:S (2.57) BS06 CLA N/A N/A N/A N/A
    292 8xlp:S (2.57) BS07 CLA N/A N/A N/A N/A
    293 8xlp:S (2.57) BS08 CLA N/A N/A N/A N/A
    294 8xlp:S (2.57) BS09 KC2 N/A N/A N/A N/A
    295 8xlp:S (2.57) BS10 CLA N/A N/A N/A N/A
    296 8xlp:S (2.57) BS11 CLA N/A N/A N/A N/A
    297 8xlp:S (2.57) BS12 II0 N/A N/A N/A N/A
    298 8xlp:S (2.57) BS13 II0 N/A N/A N/A N/A
    299 8xlp:S (2.57) BS14 II0 N/A N/A N/A N/A
    300 8xlp:S (2.57) BS15 II0 N/A N/A N/A N/A
    301 8xlp:S (2.57) BS16 WVN N/A N/A N/A N/A
    302 8xlp:W (2.57) BS01 CLA N/A N/A N/A N/A
    303 8xlp:X (2.57) BS01 CLA N/A GO:0009507 ... A6MVU5 N/A
    304 8xlp:Y (2.57) BS01 WVN N/A GO:0009507 ... A6MVU9 N/A
    305 8xlp:Z (2.57) BS01 KC2 N/A N/A A6MVZ2 N/A
    306 8xlp:a (2.57) BS01 FE2 N/A GO:0005506 ... A6MVT2 N/A
    307 8xlp:a (2.57) BS02 CLA N/A GO:0005506 ... A6MVT2 N/A
    308 8xlp:a (2.57) BS03 CLA N/A GO:0005506 ... A6MVT2 N/A
    309 8xlp:a (2.57) BS04 PHO N/A GO:0005506 ... A6MVT2 N/A
    310 8xlp:a (2.57) BS05 CLA N/A GO:0005506 ... A6MVT2 N/A
    311 8xlp:a (2.57) BS06 WVN N/A GO:0005506 ... A6MVT2 N/A
    312 8xlp:a (2.57) BS07 BCT N/A GO:0005506 ... A6MVT2 N/A
    313 8xlp:a (2.57) BS08 MN N/A GO:0005506 ... A6MVT2 N/A
    314 8xlp:a (2.57) BS09 MN N/A GO:0005506 ... A6MVT2 N/A
    315 8xlp:a (2.57) BS10 CLA N/A GO:0005506 ... A6MVT2 N/A
    316 8xlp:a (2.57) BS11 CLA N/A GO:0005506 ... A6MVT2 N/A
    317 8xlp:a (2.57) BS12 PHO N/A GO:0005506 ... A6MVT2 N/A
    318 8xlp:a (2.57) BS13 CLA N/A GO:0005506 ... A6MVT2 N/A
    319 8xlp:b (2.57) BS01 CLA N/A GO:0009507 ... A6MW31 N/A
    320 8xlp:b (2.57) BS02 CLA N/A GO:0009507 ... A6MW31 N/A
    321 8xlp:b (2.57) BS03 CLA N/A GO:0009507 ... A6MW31 N/A
    322 8xlp:b (2.57) BS04 CLA N/A GO:0009507 ... A6MW31 N/A
    323 8xlp:b (2.57) BS05 CLA N/A GO:0009507 ... A6MW31 N/A
    324 8xlp:b (2.57) BS06 CLA N/A GO:0009507 ... A6MW31 N/A
    325 8xlp:b (2.57) BS07 CLA N/A GO:0009507 ... A6MW31 N/A
    326 8xlp:b (2.57) BS08 CLA N/A GO:0009507 ... A6MW31 N/A
    327 8xlp:b (2.57) BS09 CLA N/A GO:0009507 ... A6MW31 N/A
    328 8xlp:b (2.57) BS10 CLA N/A GO:0009507 ... A6MW31 N/A
    329 8xlp:b (2.57) BS11 CLA N/A GO:0009507 ... A6MW31 N/A
    330 8xlp:b (2.57) BS12 CLA N/A GO:0009507 ... A6MW31 N/A
    331 8xlp:b (2.57) BS13 CLA N/A GO:0009507 ... A6MW31 N/A
    332 8xlp:b (2.57) BS14 CLA N/A GO:0009507 ... A6MW31 N/A
    333 8xlp:b (2.57) BS15 CLA N/A GO:0009507 ... A6MW31 N/A
    334 8xlp:b (2.57) BS16 CLA N/A GO:0009507 ... A6MW31 N/A
    335 8xlp:b (2.57) BS17 WVN N/A GO:0009507 ... A6MW31 N/A
    336 8xlp:b (2.57) BS18 WVN N/A GO:0009507 ... A6MW31 N/A
    337 8xlp:b (2.57) BS19 WVN N/A GO:0009507 ... A6MW31 N/A
    338 8xlp:c (2.57) BS01 CLA N/A N/A A6MVR2 N/A
    339 8xlp:c (2.57) BS02 CLA N/A N/A A6MVR2 N/A
    340 8xlp:c (2.57) BS03 CLA N/A N/A A6MVR2 N/A
    341 8xlp:c (2.57) BS04 CLA N/A N/A A6MVR2 N/A
    342 8xlp:c (2.57) BS05 CLA N/A N/A A6MVR2 N/A
    343 8xlp:c (2.57) BS06 CLA N/A N/A A6MVR2 N/A
    344 8xlp:c (2.57) BS07 CLA N/A N/A A6MVR2 N/A
    345 8xlp:c (2.57) BS08 CLA N/A N/A A6MVR2 N/A
    346 8xlp:c (2.57) BS09 CLA N/A N/A A6MVR2 N/A
    347 8xlp:c (2.57) BS10 CLA N/A N/A A6MVR2 N/A
    348 8xlp:c (2.57) BS11 CLA N/A N/A A6MVR2 N/A
    349 8xlp:c (2.57) BS12 CLA N/A N/A A6MVR2 N/A
    350 8xlp:c (2.57) BS13 CLA N/A N/A A6MVR2 N/A
    351 8xlp:c (2.57) BS14 WVN N/A N/A A6MVR2 N/A
    352 8xlp:c (2.57) BS15 WVN N/A N/A A6MVR2 N/A
    353 8xlp:c (2.57) BS16 WVN N/A N/A A6MVR2 N/A
    354 8xlp:d (2.57) BS01 FE2 N/A GO:0005506 ... A6MVR3 N/A
    355 8xlp:d (2.57) BS02 CLA N/A GO:0005506 ... A6MVR3 N/A
    356 8xlp:d (2.57) BS03 PHO N/A GO:0005506 ... A6MVR3 N/A
    357 8xlp:d (2.57) BS04 BCT N/A GO:0005506 ... A6MVR3 N/A
    358 8xlp:d (2.57) BS05 CLA N/A GO:0005506 ... A6MVR3 N/A
    359 8xlp:d (2.57) BS06 CLA N/A GO:0005506 ... A6MVR3 N/A
    360 8xlp:d (2.57) BS07 PHO N/A GO:0005506 ... A6MVR3 N/A
    361 8xlp:d (2.57) BS08 CLA N/A GO:0005506 ... A6MVR3 N/A
    362 8xlp:d (2.57) BS09 CLA N/A GO:0005506 ... A6MVR3 N/A
    363 8xlp:d (2.57) BS10 WVN N/A GO:0005506 ... A6MVR3 N/A
    364 8xlp:e (2.57) BS01 HEM N/A GO:0005506 ... A6MVV5 N/A
    365 8xlp:f (2.57) BS01 WVN N/A GO:0005506 ... A6MVV4 N/A
    366 8xlp:f (2.57) BS02 HEM N/A GO:0005506 ... A6MVV4 N/A
    367 8xlp:g (2.57) BS01 CLA N/A N/A N/A N/A
    368 8xlp:g (2.57) BS02 CLA N/A N/A N/A N/A
    369 8xlp:g (2.57) BS03 CLA N/A N/A N/A N/A
    370 8xlp:g (2.57) BS04 CLA N/A N/A N/A N/A
    371 8xlp:g (2.57) BS05 CLA N/A N/A N/A N/A
    372 8xlp:g (2.57) BS06 CLA N/A N/A N/A N/A
    373 8xlp:g (2.57) BS07 CLA N/A N/A N/A N/A
    374 8xlp:g (2.57) BS08 CLA N/A N/A N/A N/A
    375 8xlp:h (2.57) BS01 CLA N/A GO:0009507 ... A6MW35 N/A
    376 8xlp:h (2.57) BS02 CLA N/A GO:0009507 ... A6MW35 N/A
    377 8xlp:h (2.57) BS03 CLA N/A GO:0009507 ... A6MW35 N/A
    378 8xlp:h (2.57) BS04 CLA N/A GO:0009507 ... A6MW35 N/A
    379 8xlp:h (2.57) BS05 WVN N/A GO:0009507 ... A6MW35 N/A
    380 8xlp:i (2.57) BS01 CLA N/A GO:0005737 ... A6MVW0 N/A
    381 8xlp:i (2.57) BS02 WVN N/A GO:0005737 ... A6MVW0 N/A
    382 8xlp:k (2.57) BS01 CLA N/A GO:0005737 ... A6MVZ3 N/A
    383 8xlp:k (2.57) BS02 WVN N/A GO:0005737 ... A6MVZ3 N/A
    384 8xlp:k (2.57) BS03 WVN N/A GO:0005737 ... A6MVZ3 N/A
    385 8xlp:m (2.57) BS01 WVN N/A N/A N/A N/A
    386 8xlp:x (2.57) BS01 CLA N/A GO:0009507 ... A6MVU5 N/A
    387 8xlp:y (2.57) BS01 WVN N/A GO:0009507 ... A6MVU9 N/A
    388 8xlp:z (2.57) BS01 WVN N/A N/A A6MVZ2 N/A
    389 8xlp:z (2.57) BS02 KC2 N/A N/A A6MVZ2 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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