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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1601 1ani:A (2.5) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 7473737
    1602 1ani:A (2.5) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 7473737
    1603 1ani:A (2.5) BS03 ZN 3.1.3.1 GO:0000287 ... P00634 7473737
    1604 1ani:A (2.5) BS04 PO4 3.1.3.1 GO:0000287 ... P00634 7473737
    1605 1ani:A (2.5) BS05 PO4 3.1.3.1 GO:0000287 ... P00634 7473737
    1606 1ani:A (2.5) BS06 PO4 3.1.3.1 GO:0000287 ... P00634 7473737
    1607 1ani:B (2.5) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 7473737
    1608 1ani:B (2.5) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 7473737
    1609 1ani:B (2.5) BS03 ZN 3.1.3.1 GO:0000287 ... P00634 7473737
    1610 1ani:B (2.5) BS04 PO4 3.1.3.1 GO:0000287 ... P00634 7473737
    1611 1ani:B (2.5) BS05 PO4 3.1.3.1 GO:0000287 ... P00634 7473737
    1612 1anj:A (2.3) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 7473737
    1613 1anj:A (2.3) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 7473737
    1614 1anj:A (2.3) BS03 ZN 3.1.3.1 GO:0000287 ... P00634 7473737
    1615 1anj:A (2.3) BS04 PO4 3.1.3.1 GO:0000287 ... P00634 7473737
    1616 1anj:A (2.3) BS05 PO4 3.1.3.1 GO:0000287 ... P00634 7473737
    1617 1anj:B (2.3) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 7473737
    1618 1anj:B (2.3) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 7473737
    1619 1anj:B (2.3) BS03 ZN 3.1.3.1 GO:0000287 ... P00634 7473737
    1620 1anj:B (2.3) BS04 PO4 3.1.3.1 GO:0000287 ... P00634 7473737
    1621 1anj:B (2.3) BS05 PO4 3.1.3.1 GO:0000287 ... P00634 7473737
    1622 1ank:A (2.0) BS01 AMP 2.7.4.3 GO:0000287 ... P69441 7937733
    1623 1ank:A (2.0) BS02 ANP 2.7.4.3 GO:0000287 ... P69441 7937733
    1624 1ank:B (2.0) BS01 AMP 2.7.4.3 GO:0000287 ... P69441 7937733
    1625 1ank:B (2.0) BS02 ANP 2.7.4.3 GO:0000287 ... P69441 7937733
    1626 1ann:A (2.3) BS01 CA ? GO:0001786 ... P13214 N/A
    1627 1ann:A (2.3) BS02 CA ? GO:0001786 ... P13214 N/A
    1628 1anv:A (2.7) BS01 ZN ? GO:0003677 ... P03265 15299602
    1629 1anv:A (2.7) BS02 ZN ? GO:0003677 ... P03265 15299602
    1630 1anw:A (2.4) BS01 CA ? GO:0001786 ... P08758 1446685
    1631 1anw:A (2.4) BS02 CA ? GO:0001786 ... P08758 1446685
    1632 1anw:B (2.4) BS01 CA ? GO:0001786 ... P08758 1446685
    1633 1anw:B (2.4) BS02 CA ? GO:0001786 ... P08758 1446685
    1634 1anx:A (1.9) BS01 CA ? GO:0001786 ... P08758 8254674
    1635 1anx:A (1.9) BS02 CA ? GO:0001786 ... P08758 8254674
    1636 1anx:A (1.9) BS03 CA ? GO:0001786 ... P08758 8254674
    1637 1anx:A (1.9) BS04 CA ? GO:0001786 ... P08758 8254674
    1638 1anx:B (1.9) BS01 CA ? GO:0001786 ... P08758 8254674
    1639 1anx:B (1.9) BS02 CA ? GO:0001786 ... P08758 8254674
    1640 1anx:B (1.9) BS03 CA ? GO:0001786 ... P08758 8254674
    1641 1anx:B (1.9) BS04 CA ? GO:0001786 ... P08758 8254674
    1642 1anx:C (1.9) BS01 CA ? GO:0001786 ... P08758 8254674
    1643 1anx:C (1.9) BS02 CA ? GO:0001786 ... P08758 8254674
    1644 1anx:C (1.9) BS03 CA ? GO:0001786 ... P08758 8254674
    1645 1anx:C (1.9) BS04 CA ? GO:0001786 ... P08758 8254674
    1646 1ao0:A (2.8) BS01 MG 2.4.2.14 GO:0000287 ... P00497 9271502
    1647 1ao0:A (2.8) BS02 SF4 2.4.2.14 GO:0000287 ... P00497 9271502
    1648 1ao0:A (2.8) BS03 5GP 2.4.2.14 GO:0000287 ... P00497 9271502
    1649 1ao0:A (2.8) BS04 ADP 2.4.2.14 GO:0000287 ... P00497 9271502 PDBbind: -logKd/Ki=4.96, Kd=11.0uM
    1650 1ao0:A (2.8) BS05 ADP 2.4.2.14 GO:0000287 ... P00497 9271502 PDBbind: -logKd/Ki=4.96, Kd=11.0uM
    1651 1ao0:B (2.8) BS01 ADP 2.4.2.14 GO:0000287 ... P00497 9271502 PDBbind: -logKd/Ki=4.96, Kd=11.0uM
    1652 1ao0:B (2.8) BS02 MG 2.4.2.14 GO:0000287 ... P00497 9271502
    1653 1ao0:B (2.8) BS03 SF4 2.4.2.14 GO:0000287 ... P00497 9271502
    1654 1ao0:B (2.8) BS04 5GP 2.4.2.14 GO:0000287 ... P00497 9271502
    1655 1ao0:B (2.8) BS05 ADP 2.4.2.14 GO:0000287 ... P00497 9271502 PDBbind: -logKd/Ki=4.96, Kd=11.0uM
    1656 1ao0:C (2.8) BS01 MG 2.4.2.14 GO:0000287 ... P00497 9271502
    1657 1ao0:C (2.8) BS02 SF4 2.4.2.14 GO:0000287 ... P00497 9271502
    1658 1ao0:C (2.8) BS03 5GP 2.4.2.14 GO:0000287 ... P00497 9271502
    1659 1ao0:C (2.8) BS04 ADP 2.4.2.14 GO:0000287 ... P00497 9271502
    1660 1ao0:C (2.8) BS05 ADP 2.4.2.14 GO:0000287 ... P00497 9271502
    1661 1ao0:D (2.8) BS01 ADP 2.4.2.14 GO:0000287 ... P00497 9271502
    1662 1ao0:D (2.8) BS02 MG 2.4.2.14 GO:0000287 ... P00497 9271502
    1663 1ao0:D (2.8) BS03 SF4 2.4.2.14 GO:0000287 ... P00497 9271502
    1664 1ao0:D (2.8) BS04 5GP 2.4.2.14 GO:0000287 ... P00497 9271502
    1665 1ao0:D (2.8) BS05 ADP 2.4.2.14 GO:0000287 ... P00497 9271502
    1666 1ao7:A (2.6) BS01 peptide ? N/A P04439 8906788
    1667 1ao7:D (2.6) BS01 peptide ? GO:0002250 ... A0A075B6T6
    P01848
    8906788
    1668 1ao7:E (2.6) BS01 peptide ? N/A A0A0K0K1A5
    A0A5B9
    8906788
    1669 1ao8:A (-1.00) BS01 MTX 1.5.1.3 GO:0004146 ... P00381 9514736 PDBbind: -logKd/Ki=8.22, IC50=6nM
    BindingDB: IC50=16nM, Ki=0.004000nM
    1670 1aob:A (2.1) BS01 DDU 2.1.1.45 GO:0000287 ... P0A884 9687366
    1671 1aod:A (2.6) BS01 INS 4.6.1.13 GO:0004436 ... P34024 9367761
    1672 1aoe:A (1.6) BS01 NDP 1.5.1.3 GO:0004146 ... P22906 9374515
    1673 1aoe:A (1.6) BS02 GW3 1.5.1.3 GO:0004146 ... P22906 9374515 MOAD: Ki=0.22nM
    BindingDB: IC50=4nM, Ki=0.22nM
    1674 1aoe:B (1.6) BS01 NDP 1.5.1.3 GO:0004146 ... P22906 9374515
    1675 1aoe:B (1.6) BS02 GW3 1.5.1.3 GO:0004146 ... P22906 9374515 MOAD: Ki=0.22nM
    BindingDB: IC50=4nM, Ki=0.22nM
    1676 1aof:A (2.0) BS01 HEM 1.7.2.1
    1.7.99.1
    GO:0009055 ... P72181 9311786
    1677 1aof:A (2.0) BS02 DHE 1.7.2.1
    1.7.99.1
    GO:0009055 ... P72181 9311786
    1678 1aof:B (2.0) BS01 HEM 1.7.2.1
    1.7.99.1
    GO:0009055 ... P72181 9311786
    1679 1aof:B (2.0) BS02 DHE 1.7.2.1
    1.7.99.1
    GO:0009055 ... P72181 9311786
    1680 1aog:A (2.3) BS01 FAD 1.8.1.12 GO:0004362 ... P28593 8771196
    1681 1aog:B (2.3) BS01 FAD 1.8.1.12 GO:0004362 ... P28593 8771196
    1682 1aoi:A (2.8) BS01 dna ? GO:0000786 ... P02302 9305837
    1683 1aoi:A (2.8) BS02 dna ? GO:0000786 ... P02302 9305837
    1684 1aoi:B (2.8) BS01 dna ? GO:0003677 ... P62799 9305837
    1685 1aoi:B (2.8) BS02 dna ? GO:0003677 ... P62799 9305837
    1686 1aoi:C (2.8) BS01 dna ? GO:0000786 ... P06897 9305837
    1687 1aoi:C (2.8) BS02 dna ? GO:0000786 ... P06897 9305837
    1688 1aoi:D (2.8) BS01 dna ? GO:0000786 ... P02281 9305837
    1689 1aoi:D (2.8) BS02 dna ? GO:0000786 ... P02281 9305837
    1690 1aoi:E (2.8) BS01 dna ? GO:0000786 ... P02302 9305837
    1691 1aoi:E (2.8) BS02 dna ? GO:0000786 ... P02302 9305837
    1692 1aoi:F (2.8) BS01 dna ? GO:0003677 ... P62799 9305837
    1693 1aoi:F (2.8) BS02 dna ? GO:0003677 ... P62799 9305837
    1694 1aoi:G (2.8) BS01 dna ? GO:0000786 ... P06897 9305837
    1695 1aoi:G (2.8) BS02 dna ? GO:0000786 ... P06897 9305837
    1696 1aoi:H (2.8) BS01 dna ? GO:0000786 ... P02281 9305837
    1697 1aoi:H (2.8) BS02 dna ? GO:0000786 ... P02281 9305837
    1698 1aom:A (1.8) BS01 DHE 1.7.2.1
    1.7.99.1
    GO:0009055 ... P72181 9311786
    1699 1aom:B (1.8) BS01 HEM 1.7.2.1
    1.7.99.1
    GO:0009055 ... P72181 9311786
    1700 1aom:B (1.8) BS02 DHE 1.7.2.1
    1.7.99.1
    GO:0009055 ... P72181 9311786
    1701 1aom:B (1.8) BS03 NO 1.7.2.1
    1.7.99.1
    GO:0009055 ... P72181 9311786
    1702 1aon:A (3.0) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 9285585
    1703 1aon:B (3.0) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 9285585
    1704 1aon:C (3.0) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 9285585
    1705 1aon:D (3.0) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 9285585
    1706 1aon:E (3.0) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 9285585
    1707 1aon:F (3.0) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 9285585
    1708 1aon:G (3.0) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 9285585
    1709 1aoo:A (-1.00) BS01 AG N/A GO:0005507 ... N/A 8566237
    1710 1aoo:A (-1.00) BS02 AG N/A GO:0005507 ... N/A 8566237
    1711 1aoo:A (-1.00) BS03 AG N/A GO:0005507 ... N/A 8566237
    1712 1aoo:A (-1.00) BS04 AG N/A GO:0005507 ... N/A 8566237
    1713 1aoo:A (-1.00) BS05 AG N/A GO:0005507 ... N/A 8566237
    1714 1aoo:A (-1.00) BS06 AG N/A GO:0005507 ... N/A 8566237
    1715 1aoo:A (-1.00) BS07 AG N/A GO:0005507 ... N/A 8566237
    1716 1aop:A (1.6) BS01 PO4 1.8.1.2 GO:0004783 ... P17846 7569952
    1717 1aop:A (1.6) BS02 SF4 1.8.1.2 GO:0004783 ... P17846 7569952
    1718 1aop:A (1.6) BS03 SRM 1.8.1.2 GO:0004783 ... P17846 7569952
    1719 1aoq:A (1.8) BS01 HEM 1.7.2.1
    1.7.99.1
    GO:0009055 ... P72181 9311786
    1720 1aoq:A (1.8) BS02 DHE 1.7.2.1
    1.7.99.1
    GO:0009055 ... P72181 9311786
    1721 1aoq:B (1.8) BS01 HEM 1.7.2.1
    1.7.99.1
    GO:0009055 ... P72181 9311786
    1722 1aoq:B (1.8) BS02 DHE 1.7.2.1
    1.7.99.1
    GO:0009055 ... P72181 9311786
    1723 1aor:A (2.3) BS01 FE 1.2.7.5 GO:0009055 ... Q51739 7878465
    1724 1aor:A (2.3) BS02 SF4 1.2.7.5 GO:0009055 ... Q51739 7878465
    1725 1aor:A (2.3) BS03 PTE 1.2.7.5 GO:0009055 ... Q51739 7878465
    1726 1aor:B (2.3) BS01 FE 1.2.7.5 GO:0009055 ... Q51739 7878465
    1727 1aor:B (2.3) BS02 SF4 1.2.7.5 GO:0009055 ... Q51739 7878465
    1728 1aor:B (2.3) BS03 PTE 1.2.7.5 GO:0009055 ... Q51739 7878465
    1729 1aot:F (-1.00) BS01 peptide 2.7.10.2 N/A P06241 9351806
    1730 1aou:F (-1.00) BS01 peptide 2.7.10.2 N/A P06241 9351806
    1731 1aox:A (2.1) BS01 MG ? N/A P17301 9353312
    1732 1aox:B (2.1) BS01 MG ? N/A P17301 9353312
    1733 1aoz:A (1.9) BS01 CU 1.10.3.3 GO:0005507 ... P37064 1548698
    1734 1aoz:B (1.9) BS01 CU 1.10.3.3 GO:0005507 ... P37064 1548698
    1735 1ap4:A (-1.00) BS01 CA ? GO:0005509 ... P63316 9315850
    1736 1ap5:A (2.2) BS01 MN 1.15.1.1 GO:0004784 ... P04179 9537987
    1737 1ap5:B (2.2) BS01 MN 1.15.1.1 GO:0004784 ... P04179 9537987
    1738 1ap6:A (1.9) BS01 MN 1.15.1.1 GO:0004784 ... P04179 9537987
    1739 1ap6:B (1.9) BS01 MN 1.15.1.1 GO:0004784 ... P04179 9537987
    1740 1ap8:A (-1.00) BS01 M7G ? GO:0000184 ... P07260 9302999
    1741 1ap9:A (2.35) BS01 RET ? GO:0005216 ... P02945 9287223
    1742 1apb:A (1.76) BS01 FCA ? GO:0015407 ... P02924 2204627 MOAD: Kd=1.51uM
    1743 1apb:A (1.76) BS02 FCB ? GO:0015407 ... P02924 2204627 MOAD: Kd=1.51uM
    PDBbind: -logKd/Ki=5.82, Kd=1.51uM
    1744 1aph:B (2.0) BS01 peptide ? GO:0005179 ... P01317 1477273
    1745 1aph:B (2.0) BS02 DCE ? GO:0005179 ... P01317 1477273
    1746 1apl:C (2.7) BS01 dna ? GO:0003677 ... P0CY08 1682054
    1747 1apl:C (2.7) BS02 dna ? GO:0003677 ... P0CY08 1682054
    1748 1apl:D (2.7) BS01 dna ? GO:0003677 ... P0CY08 1682054
    1749 1apl:D (2.7) BS02 dna ? GO:0003677 ... P0CY08 1682054
    1750 1apm:E (2.0) BS01 peptide 2.7.11.11 GO:0000122 ... P05132 15299526
    1751 1apt:E (1.8) BS01 peptide 3.4.23.20 GO:0004190 ... P00798 N/A
    1752 1apu:E (1.8) BS01 peptide 3.4.23.20 GO:0004190 ... P00798 N/A
    1753 1apv:E (1.8) BS01 peptide 3.4.23.20 GO:0004190 ... P00798 1567842
    1754 1apv:E (1.8) BS02 MAN 3.4.23.20 GO:0004190 ... P00798 1567842
    1755 1apw:E (1.8) BS01 peptide 3.4.23.20 GO:0004190 ... P00798 1567842
    1756 1apw:E (1.8) BS02 MAN 3.4.23.20 GO:0004190 ... P00798 1567842
    1757 1apx:A (2.2) BS01 HEM 1.11.1.11 GO:0000302 ... P48534 7703247
    1758 1apx:B (2.2) BS01 HEM 1.11.1.11 GO:0000302 ... P48534 7703247
    1759 1apx:C (2.2) BS01 HEM 1.11.1.11 GO:0000302 ... P48534 7703247
    1760 1apx:D (2.2) BS01 HEM 1.11.1.11 GO:0000302 ... P48534 7703247
    1761 1apz:B (2.3) BS01 ASP 3.5.1.26 GO:0016787 ... P20933 8846222 BindingDB: Ki=600000nM
    1762 1apz:D (2.3) BS01 ASP 3.5.1.26 GO:0016787 ... P20933 8846222 BindingDB: Ki=600000nM
    1763 1aq1:A (2.0) BS01 STU 2.7.11.22 GO:0000082 ... P24941 9334743 PDBbind: -logKd/Ki=8.15, IC50=7nM
    1764 1aq2:A (1.9) BS01 MN 4.1.1.49 GO:0000287 ... P22259 9406547
    1765 1aq2:A (1.9) BS02 ATP 4.1.1.49 GO:0000287 ... P22259 9406547
    1766 1aq2:A (1.9) BS03 PYR 4.1.1.49 GO:0000287 ... P22259 9406547
    1767 1aq3:A (2.8) BS01 rna ? GO:0003723 ... P03612 9469847
    1768 1aq3:C (2.8) BS01 rna ? GO:0003723 ... P03612 9469847
    1769 1aq4:A (3.0) BS01 rna ? GO:0003723 ... P03612 9469847
    1770 1aq4:C (3.0) BS01 rna ? GO:0003723 ... P03612 9469847
    1771 1aq7:A (2.2) BS01 peptide 3.4.21.4 GO:0004175 ... P00760 N/A
    1772 1aq8:A (2.0) BS01 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1773 1aq8:A (2.0) BS02 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1774 1aq8:B (2.0) BS01 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1775 1aq8:B (2.0) BS02 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1776 1aq8:C (2.0) BS01 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1777 1aq8:C (2.0) BS02 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1778 1aqa:A (-1.00) BS01 HEM ? GO:0020037 ... P00173 9363779
    1779 1aqb:A (1.65) BS01 CD ? GO:0005501 ... P27485 9757135
    1780 1aqb:A (1.65) BS02 RTL ? GO:0005501 ... P27485 9757135
    1781 1aqc:A (2.3) BS01 peptide ? N/A Q02410 9321393
    1782 1aqc:B (2.3) BS01 peptide ? N/A Q02410 9321393
    1783 1aqd:A (2.45) BS01 peptide ? GO:0006955 ... P01903 9351812
    1784 1aqd:B (2.45) BS01 peptide ? GO:0006955 ... P01911 9351812
    1785 1aqd:D (2.45) BS01 peptide ? GO:0006955 ... P01903 9351812
    1786 1aqd:E (2.45) BS01 peptide ? GO:0006955 ... P01911 9351812
    1787 1aqd:G (2.45) BS01 peptide ? GO:0006955 ... P01903 9351812
    1788 1aqd:H (2.45) BS01 peptide ? GO:0006955 ... P01911 9351812
    1789 1aqd:J (2.45) BS01 peptide ? GO:0006955 ... P01903 9351812
    1790 1aqd:K (2.45) BS01 peptide ? GO:0006955 ... P01911 9351812
    1791 1aqe:A (2.2) BS01 HEM ? GO:0009055 ... P38554 9485359
    1792 1aqe:A (2.2) BS02 HEM ? GO:0009055 ... P38554 9485359
    1793 1aqe:A (2.2) BS03 HEM ? GO:0009055 ... P38554 9485359
    1794 1aqe:A (2.2) BS04 HEM ? GO:0009055 ... P38554 9485359
    1795 1aqf:A (2.7) BS01 MG 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9308890
    1796 1aqf:A (2.7) BS02 PEQ 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9308890
    1797 1aqf:B (2.7) BS01 MG 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9308890
    1798 1aqf:B (2.7) BS02 PEQ 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9308890
    1799 1aqf:C (2.7) BS01 MG 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9308890
    1800 1aqf:C (2.7) BS02 PEQ 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9308890

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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