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BioLiP Library
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    15601 1gpm:B (2.2) BS01 POP 6.3.5.2 GO:0003921 ... P04079 8548458
    15602 1gpm:B (2.2) BS02 AMP 6.3.5.2 GO:0003921 ... P04079 8548458
    15603 1gpm:C (2.2) BS01 POP 6.3.5.2 GO:0003921 ... P04079 8548458
    15604 1gpm:C (2.2) BS02 AMP 6.3.5.2 GO:0003921 ... P04079 8548458
    15605 1gpm:D (2.2) BS01 POP 6.3.5.2 GO:0003921 ... P04079 8548458
    15606 1gpm:D (2.2) BS02 AMP 6.3.5.2 GO:0003921 ... P04079 8548458
    15607 1gpn:A (2.35) BS01 HUB 3.1.1.7 GO:0001507 ... P04058 12196020 MOAD: Ki=0.334uM
    PDBbind: -logKd/Ki=6.48, Ki=0.334uM
    BindingDB: Ki=334nM
    15608 1gpu:A (1.86) BS01 CA 2.2.1.1 GO:0003824 ... P23254 11773632
    15609 1gpu:A (1.86) BS02 THD 2.2.1.1 GO:0003824 ... P23254 11773632
    15610 1gpu:A (1.86) BS03 THD 2.2.1.1 GO:0003824 ... P23254 11773632
    15611 1gpu:B (1.86) BS01 THD 2.2.1.1 GO:0003824 ... P23254 11773632
    15612 1gpu:B (1.86) BS02 CA 2.2.1.1 GO:0003824 ... P23254 11773632
    15613 1gpu:B (1.86) BS03 THD 2.2.1.1 GO:0003824 ... P23254 11773632
    15614 1gpw:C (2.4) BS01 PO4 4.3.2.10 GO:0000105 ... Q9X0C6 11839304
    15615 1gpw:C (2.4) BS02 PO4 4.3.2.10 GO:0000105 ... Q9X0C6 11839304
    15616 1gpw:E (2.4) BS01 PO4 4.3.2.10 GO:0000105 ... Q9X0C6 11839304
    15617 1gpx:A (-1.00) BS01 GA ? GO:0005515 ... P00259 9835048
    15618 1gpy:A (2.4) BS01 G6P 2.4.1.1 GO:0000166 ... P00489 8331662 MOAD: Kd~25uM
    PDBbind: -logKd/Ki=4.70, Kd=20uM
    15619 1gpy:A (2.4) BS02 PLP 2.4.1.1 GO:0000166 ... P00489 8331662
    15620 1gpz:A (2.9) BS01 FUC 3.4.21.41 GO:0004252 ... P00736 11823416
    15621 1gpz:A (2.9) BS02 FUC 3.4.21.41 GO:0004252 ... P00736 11823416
    15622 1gpz:B (2.9) BS01 FUC 3.4.21.41 GO:0004252 ... P00736 11823416
    15623 1gq1:A (1.4) BS01 HEC 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 12556530
    15624 1gq1:A (1.4) BS02 DHE 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 12556530
    15625 1gq1:A (1.4) BS03 SO4 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 12556530
    15626 1gq1:A (1.4) BS04 SO4 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 12556530
    15627 1gq1:A (1.4) BS05 SO4 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 12556530
    15628 1gq1:B (1.4) BS01 HEC 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 12556530
    15629 1gq1:B (1.4) BS02 DHE 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 12556530
    15630 1gq1:B (1.4) BS03 SO4 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 12556530
    15631 1gq1:B (1.4) BS04 SO4 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 12556530
    15632 1gq1:B (1.4) BS05 SO4 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 12556530
    15633 1gq1:B (1.4) BS06 SO4 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 12556530
    15634 1gq1:B (1.4) BS07 SO4 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 12556530
    15635 1gq2:A (2.5) BS01 NAP 1.1.1.40 GO:0004470 ... P40927 11790843
    15636 1gq2:A (2.5) BS02 OXL 1.1.1.40 GO:0004470 ... P40927 11790843
    15637 1gq2:A (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    15638 1gq2:B (2.5) BS01 NAP 1.1.1.40 GO:0004470 ... P40927 11790843
    15639 1gq2:B (2.5) BS02 OXL 1.1.1.40 GO:0004470 ... P40927 11790843
    15640 1gq2:B (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    15641 1gq2:C (2.5) BS01 NAP 1.1.1.40 GO:0004470 ... P40927 11790843
    15642 1gq2:C (2.5) BS02 OXL 1.1.1.40 GO:0004470 ... P40927 11790843
    15643 1gq2:C (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    15644 1gq2:D (2.5) BS01 NAP 1.1.1.40 GO:0004470 ... P40927 11790843
    15645 1gq2:D (2.5) BS02 OXL 1.1.1.40 GO:0004470 ... P40927 11790843
    15646 1gq2:D (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    15647 1gq2:E (2.5) BS01 NAP 1.1.1.40 GO:0004470 ... P40927 11790843
    15648 1gq2:E (2.5) BS02 OXL 1.1.1.40 GO:0004470 ... P40927 11790843
    15649 1gq2:E (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    15650 1gq2:F (2.5) BS01 NAP 1.1.1.40 GO:0004470 ... P40927 11790843
    15651 1gq2:F (2.5) BS02 OXL 1.1.1.40 GO:0004470 ... P40927 11790843
    15652 1gq2:F (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    15653 1gq2:G (2.5) BS01 NAP 1.1.1.40 GO:0004470 ... P40927 11790843
    15654 1gq2:G (2.5) BS02 OXL 1.1.1.40 GO:0004470 ... P40927 11790843
    15655 1gq2:G (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    15656 1gq2:H (2.5) BS01 NAP 1.1.1.40 GO:0004470 ... P40927 11790843
    15657 1gq2:H (2.5) BS02 OXL 1.1.1.40 GO:0004470 ... P40927 11790843
    15658 1gq2:H (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    15659 1gq2:I (2.5) BS01 NAP 1.1.1.40 GO:0004470 ... P40927 11790843
    15660 1gq2:I (2.5) BS02 OXL 1.1.1.40 GO:0004470 ... P40927 11790843
    15661 1gq2:I (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    15662 1gq2:J (2.5) BS01 NAP 1.1.1.40 GO:0004470 ... P40927 11790843
    15663 1gq2:J (2.5) BS02 OXL 1.1.1.40 GO:0004470 ... P40927 11790843
    15664 1gq2:J (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    15665 1gq2:K (2.5) BS01 NAP 1.1.1.40 GO:0004470 ... P40927 11790843
    15666 1gq2:K (2.5) BS02 OXL 1.1.1.40 GO:0004470 ... P40927 11790843
    15667 1gq2:K (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    15668 1gq2:L (2.5) BS01 NAP 1.1.1.40 GO:0004470 ... P40927 11790843
    15669 1gq2:L (2.5) BS02 OXL 1.1.1.40 GO:0004470 ... P40927 11790843
    15670 1gq2:L (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    15671 1gq2:M (2.5) BS01 NAP 1.1.1.40 GO:0004470 ... P40927 11790843
    15672 1gq2:M (2.5) BS02 OXL 1.1.1.40 GO:0004470 ... P40927 11790843
    15673 1gq2:M (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    15674 1gq2:N (2.5) BS01 NAP 1.1.1.40 GO:0004470 ... P40927 11790843
    15675 1gq2:N (2.5) BS02 OXL 1.1.1.40 GO:0004470 ... P40927 11790843
    15676 1gq2:N (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    15677 1gq2:O (2.5) BS01 NAP 1.1.1.40 GO:0004470 ... P40927 11790843
    15678 1gq2:O (2.5) BS02 OXL 1.1.1.40 GO:0004470 ... P40927 11790843
    15679 1gq2:O (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    15680 1gq2:P (2.5) BS01 NAP 1.1.1.40 GO:0004470 ... P40927 11790843
    15681 1gq2:P (2.5) BS02 OXL 1.1.1.40 GO:0004470 ... P40927 11790843
    15682 1gq2:P (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    15683 1gq6:A (1.75) BS01 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    15684 1gq6:A (1.75) BS02 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    15685 1gq6:B (1.75) BS01 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    15686 1gq6:B (1.75) BS02 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    15687 1gq6:C (1.75) BS01 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    15688 1gq6:C (1.75) BS02 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    15689 1gq7:A (2.45) BS01 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    15690 1gq7:A (2.45) BS02 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    15691 1gq7:B (2.45) BS01 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    15692 1gq7:B (2.45) BS02 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    15693 1gq7:C (2.45) BS01 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    15694 1gq7:C (2.45) BS02 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    15695 1gq7:D (2.45) BS01 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    15696 1gq7:D (2.45) BS02 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    15697 1gq7:E (2.45) BS01 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    15698 1gq7:E (2.45) BS02 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    15699 1gq7:F (2.45) BS01 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    15700 1gq7:F (2.45) BS02 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    15701 1gq9:A (2.6) BS01 MG 2.7.7.38 GO:0005737 ... P42216 11802716
    15702 1gq9:A (2.6) BS02 CTP 2.7.7.38 GO:0005737 ... P42216 11802716
    15703 1gq9:B (2.6) BS01 MG 2.7.7.38 GO:0005737 ... P42216 11802716
    15704 1gq9:B (2.6) BS02 CTP 2.7.7.38 GO:0005737 ... P42216 11802716
    15705 1gqa:A (1.8) BS01 HEC ? GO:0005506 ... P00148 N/A
    15706 1gqa:D (1.8) BS01 HEC ? GO:0005506 ... P00148 N/A
    15707 1gqb:A (1.8) BS01 BR ? GO:0005537 ... P11717 12499540
    15708 1gqb:A (1.8) BS02 BR ? GO:0005537 ... P11717 12499540
    15709 1gqb:B (1.8) BS01 BR ? GO:0005537 ... P11717 12499540
    15710 1gqb:B (1.8) BS02 BR ? GO:0005537 ... P11717 12499540
    15711 1gqc:A (2.6) BS01 MG 2.7.7.38 GO:0005737 ... P42216 11802716
    15712 1gqc:A (2.6) BS02 CMK 2.7.7.38 GO:0005737 ... P42216 11802716
    15713 1gqc:B (2.6) BS01 MG 2.7.7.38 GO:0005737 ... P42216 11802716
    15714 1gqc:B (2.6) BS02 C5P 2.7.7.38 GO:0005737 ... P42216 11802716
    15715 1gqg:A (1.7) BS01 DCD 1.13.11.24 GO:0008127 ... Q7SIC2 12069585
    15716 1gqg:A (1.7) BS02 CU 1.13.11.24 GO:0008127 ... Q7SIC2 12069585
    15717 1gqg:B (1.7) BS01 DCD 1.13.11.24 GO:0008127 ... Q7SIC2 12069585
    15718 1gqg:B (1.7) BS02 CU 1.13.11.24 GO:0008127 ... Q7SIC2 12069585
    15719 1gqg:C (1.7) BS01 DCD 1.13.11.24 GO:0008127 ... Q7SIC2 12069585
    15720 1gqg:C (1.7) BS02 CU 1.13.11.24 GO:0008127 ... Q7SIC2 12069585
    15721 1gqg:D (1.7) BS01 DCD 1.13.11.24 GO:0008127 ... Q7SIC2 12069585
    15722 1gqg:D (1.7) BS02 CU 1.13.11.24 GO:0008127 ... Q7SIC2 12069585
    15723 1gqh:A (2.15) BS01 KOJ 1.13.11.24 GO:0008127 ... Q7SIC2 12069585
    15724 1gqh:A (2.15) BS02 CU 1.13.11.24 GO:0008127 ... Q7SIC2 12069585
    15725 1gqh:B (2.15) BS01 KOJ 1.13.11.24 GO:0008127 ... Q7SIC2 12069585
    15726 1gqh:B (2.15) BS02 CU 1.13.11.24 GO:0008127 ... Q7SIC2 12069585
    15727 1gqh:C (2.15) BS01 KOJ 1.13.11.24 GO:0008127 ... Q7SIC2 12069585
    15728 1gqh:C (2.15) BS02 CU 1.13.11.24 GO:0008127 ... Q7SIC2 12069585
    15729 1gqh:D (2.15) BS01 KOJ 1.13.11.24 GO:0008127 ... Q7SIC2 12069585
    15730 1gqh:D (2.15) BS02 CU 1.13.11.24 GO:0008127 ... Q7SIC2 12069585
    15731 1gqi:A (1.48) BS01 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    15732 1gqi:A (1.48) BS02 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    15733 1gqi:A (1.48) BS03 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    15734 1gqi:B (1.48) BS01 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    15735 1gqi:B (1.48) BS02 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    15736 1gqi:B (1.48) BS03 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    15737 1gqi:B (1.48) BS04 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    15738 1gqj:A (1.9) BS01 XYP 3.2.1.131 GO:0004553 ... B3PC73 11937059
    15739 1gqj:A (1.9) BS02 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    15740 1gqj:A (1.9) BS03 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    15741 1gqj:A (1.9) BS04 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    15742 1gqj:A (1.9) BS05 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    15743 1gqj:B (1.9) BS01 XYP 3.2.1.131 GO:0004553 ... B3PC73 11937059
    15744 1gqj:B (1.9) BS02 XYP 3.2.1.131 GO:0004553 ... B3PC73 11937059
    15745 1gqj:B (1.9) BS03 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    15746 1gqj:B (1.9) BS04 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    15747 1gqj:B (1.9) BS05 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    15748 1gqk:A (1.9) BS01 BDP 3.2.1.131 GO:0004553 ... B3PC73 11937059
    15749 1gqk:A (1.9) BS02 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    15750 1gqk:A (1.9) BS03 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    15751 1gqk:A (1.9) BS04 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    15752 1gqk:B (1.9) BS01 BDP 3.2.1.131 GO:0004553 ... B3PC73 11937059
    15753 1gqk:B (1.9) BS02 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    15754 1gqk:B (1.9) BS03 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    15755 1gqk:B (1.9) BS04 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    15756 1gql:A (1.67) BS01 XYP 3.2.1.131 GO:0004553 ... B3PC73 11937059
    15757 1gql:A (1.67) BS02 BDP 3.2.1.131 GO:0004553 ... B3PC73 11937059
    15758 1gql:A (1.67) BS03 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    15759 1gql:A (1.67) BS04 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    15760 1gql:A (1.67) BS05 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    15761 1gql:A (1.67) BS06 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    15762 1gql:B (1.67) BS01 XYP 3.2.1.131 GO:0004553 ... B3PC73 11937059
    15763 1gql:B (1.67) BS02 BDP 3.2.1.131 GO:0004553 ... B3PC73 11937059
    15764 1gql:B (1.67) BS03 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    15765 1gql:B (1.67) BS04 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    15766 1gql:B (1.67) BS05 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    15767 1gqm:A (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    15768 1gqm:A (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    15769 1gqm:A (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    15770 1gqm:B (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    15771 1gqm:B (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    15772 1gqm:B (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    15773 1gqm:C (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    15774 1gqm:C (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    15775 1gqm:C (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    15776 1gqm:D (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    15777 1gqm:D (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    15778 1gqm:D (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    15779 1gqm:E (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    15780 1gqm:E (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    15781 1gqm:E (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    15782 1gqm:F (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    15783 1gqm:F (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    15784 1gqm:F (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    15785 1gqm:G (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    15786 1gqm:G (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    15787 1gqm:G (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    15788 1gqm:H (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    15789 1gqm:H (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    15790 1gqm:H (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    15791 1gqm:I (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    15792 1gqm:I (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    15793 1gqm:I (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    15794 1gqm:J (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    15795 1gqm:J (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    15796 1gqm:J (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    15797 1gqm:K (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    15798 1gqm:K (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    15799 1gqm:K (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    15800 1gqm:L (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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