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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    13801 1g0n:B (2.0) BS01 NDP 1.1.1.252 GO:0005575 ... Q12634 11342131
    13802 1g0o:A (1.7) BS01 NDP 1.1.1.252 GO:0005575 ... Q12634 11342131
    13803 1g0o:A (1.7) BS02 PYQ 1.1.1.252 GO:0005575 ... Q12634 11342131 MOAD: Ki=14nM
    13804 1g0o:B (1.7) BS01 NDP 1.1.1.252 GO:0005575 ... Q12634 11342131
    13805 1g0o:B (1.7) BS02 PYQ 1.1.1.252 GO:0005575 ... Q12634 11342131 MOAD: Ki=14nM
    13806 1g0o:C (1.7) BS01 NDP 1.1.1.252 GO:0005575 ... Q12634 11342131
    13807 1g0o:C (1.7) BS02 PYQ 1.1.1.252 GO:0005575 ... Q12634 11342131 MOAD: Ki=14nM
    13808 1g0o:D (1.7) BS01 NDP 1.1.1.252 GO:0005575 ... Q12634 11342131
    13809 1g0o:D (1.7) BS02 PYQ 1.1.1.252 GO:0005575 ... Q12634 11342131 MOAD: Ki=14nM
    13810 1g0r:A (1.87) BS01 G1P 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13811 1g0r:B (1.87) BS01 G1P 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13812 1g0r:C (1.87) BS01 G1P 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13813 1g0r:D (1.87) BS01 G1P 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13814 1g0r:E (1.87) BS01 G1P 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13815 1g0r:G (1.87) BS01 G1P 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13816 1g0r:H (1.87) BS01 G1P 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13817 1g0u:2 (2.4) BS01 MG 3.4.25.1 GO:0000502 ... P38624 11062564
    13818 1g0u:G (2.4) BS01 MG 3.4.99.46 GO:0000502 ... P21243 11062564
    13819 1g0u:G (2.4) BS02 MG 3.4.99.46 GO:0000502 ... P21243 11062564
    13820 1g0u:H (2.4) BS01 MG 3.4.25.1 GO:0004298 ... P25043 11062564
    13821 1g0u:I (2.4) BS01 MG 3.4.99.46 GO:0000502 ... P25451 11062564
    13822 1g0u:K (2.4) BS01 MG 3.4.25.1 GO:0004298 ... P30656 11062564
    13823 1g0u:L (2.4) BS01 MG 3.4.99.46 GO:0000502 ... P23724 11062564
    13824 1g0u:L (2.4) BS02 MG 3.4.99.46 GO:0000502 ... P23724 11062564
    13825 1g0u:N (2.4) BS01 MG 3.4.25.1 GO:0000502 ... P38624 11062564
    13826 1g0u:U (2.4) BS01 MG 3.4.99.46 GO:0000502 ... P21243 11062564
    13827 1g0u:U (2.4) BS02 MG 3.4.99.46 GO:0000502 ... P21243 11062564
    13828 1g0u:V (2.4) BS01 MG 3.4.25.1 GO:0004298 ... P25043 11062564
    13829 1g0u:W (2.4) BS01 MG 3.4.99.46 GO:0000502 ... P25451 11062564
    13830 1g0u:Y (2.4) BS01 MG 3.4.25.1 GO:0004298 ... P30656 11062564
    13831 1g0u:Z (2.4) BS01 MG 3.4.99.46 GO:0000502 ... P23724 11062564
    13832 1g0u:Z (2.4) BS02 MG 3.4.99.46 GO:0000502 ... P23724 11062564
    13833 1g0v:A (2.0) BS01 peptide 3.4.23.25 GO:0000324 ... P07267 11042188
    13834 1g0v:A (2.0) BS02 MAN 3.4.23.25 GO:0000324 ... P07267 11042188
    13835 1g0y:R (3.0) BS01 peptide 3.2.2.6 GO:0004908 ... P14778 10903327
    13836 1g12:A (1.6) BS01 MAN 3.4.24.20 GO:0004222 ... P81054 11223512
    13837 1g12:A (1.6) BS02 ZN 3.4.24.20 GO:0004222 ... P81054 11223512
    13838 1g15:A (1.9) BS01 MN 3.1.26.4 GO:0000287 ... P0A7Y4 11083878
    13839 1g15:A (1.9) BS02 MN 3.1.26.4 GO:0000287 ... P0A7Y4 11083878
    13840 1g16:A (1.8) BS01 CO ? GO:0003924 ... P07560 11099382
    13841 1g16:A (1.8) BS02 GDP ? GO:0003924 ... P07560 11099382
    13842 1g16:B (1.8) BS01 GDP ? GO:0003924 ... P07560 11099382
    13843 1g16:C (1.8) BS01 GDP ? GO:0003924 ... P07560 11099382
    13844 1g16:D (1.8) BS01 CO ? GO:0003924 ... P07560 11099382
    13845 1g16:D (1.8) BS02 GDP ? GO:0003924 ... P07560 11099382
    13846 1g17:A (2.0) BS01 MG ? GO:0003924 ... P07560 11099382
    13847 1g17:A (2.0) BS02 GNP ? GO:0003924 ... P07560 11099382
    13848 1g17:B (2.0) BS01 MG ? GO:0003924 ... P07560 11099382
    13849 1g17:B (2.0) BS02 GNP ? GO:0003924 ... P07560 11099382
    13850 1g18:A (3.8) BS01 ALF 3.1.-.- GO:0003677 ... P9WHJ3 11121488
    13851 1g18:A (3.8) BS02 ADP 3.1.-.- GO:0003677 ... P9WHJ3 11121488
    13852 1g1a:A (2.47) BS01 NAD 4.2.1.46 GO:0000166 ... Q9EU31 11243820
    13853 1g1a:B (2.47) BS01 NAD 4.2.1.46 GO:0000166 ... Q9EU31 11243820
    13854 1g1a:C (2.47) BS01 NAD 4.2.1.46 GO:0000166 ... Q9EU31 11243820
    13855 1g1a:D (2.47) BS01 NAD 4.2.1.46 GO:0000166 ... Q9EU31 11243820
    13856 1g1d:A (2.04) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    13857 1g1d:A (2.04) BS02 FSB 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A MOAD: Kd=0.36nM
    PDBbind: -logKd/Ki=9.44, Kd=0.36nM
    13858 1g1e:B (-1.00) BS01 peptide ? GO:0003714 ... Q60520 11106735
    13859 1g1f:A (2.0) BS01 peptide 3.1.3.48 GO:0004725 ... P18031 11163213
    13860 1g1g:A (2.2) BS01 peptide 3.1.3.48 GO:0004725 ... P18031 11163213
    13861 1g1h:A (2.4) BS01 peptide 3.1.3.48 GO:0004725 ... P18031 11163213
    13862 1g1i:A (2.0) BS01 CA ? N/A P04512 11124032
    13863 1g1j:B (1.86) BS01 SR ? N/A P04512 11124032
    13864 1g1l:A (1.77) BS01 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13865 1g1l:A (1.77) BS02 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13866 1g1l:A (1.77) BS03 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13867 1g1l:B (1.77) BS01 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13868 1g1l:B (1.77) BS02 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13869 1g1l:B (1.77) BS03 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13870 1g1l:C (1.77) BS01 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13871 1g1l:C (1.77) BS02 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13872 1g1l:C (1.77) BS03 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13873 1g1l:D (1.77) BS01 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13874 1g1l:D (1.77) BS02 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13875 1g1l:D (1.77) BS03 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13876 1g1l:E (1.77) BS01 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13877 1g1l:E (1.77) BS02 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13878 1g1l:E (1.77) BS03 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13879 1g1l:F (1.77) BS01 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13880 1g1l:F (1.77) BS02 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13881 1g1l:F (1.77) BS03 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13882 1g1l:G (1.77) BS01 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13883 1g1l:G (1.77) BS02 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13884 1g1l:G (1.77) BS03 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13885 1g1l:H (1.77) BS01 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13886 1g1l:H (1.77) BS02 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13887 1g1l:H (1.77) BS03 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13888 1g1m:A (2.25) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 11170381
    13889 1g1m:B (2.25) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 11170381
    13890 1g1q:A (2.4) BS01 CA ? N/A P16109 11081633
    13891 1g1q:B (2.4) BS01 CA ? N/A P16109 11081633
    13892 1g1q:C (2.4) BS01 CA ? N/A P16109 11081633
    13893 1g1q:D (2.4) BS01 CA ? N/A P16109 11081633
    13894 1g1r:A (3.4) BS01 GAL ? N/A P16109 11081633
    13895 1g1r:A (3.4) BS02 FUC ? N/A P16109 11081633
    13896 1g1r:A (3.4) BS03 CA ? N/A P16109 11081633
    13897 1g1r:B (3.4) BS01 GAL ? N/A P16109 11081633
    13898 1g1r:B (3.4) BS02 SIA ? N/A P16109 11081633
    13899 1g1r:B (3.4) BS03 FUC ? N/A P16109 11081633
    13900 1g1r:B (3.4) BS04 CA ? N/A P16109 11081633
    13901 1g1r:C (3.4) BS01 CA ? N/A P16109 11081633
    13902 1g1r:D (3.4) BS01 GAL ? N/A P16109 11081633
    13903 1g1r:D (3.4) BS02 SIA ? N/A P16109 11081633
    13904 1g1r:D (3.4) BS03 CA ? N/A P16109 11081633
    13905 1g1s:A (1.9) BS01 peptide ? N/A P16109 11081633
    13906 1g1s:A (1.9) BS02 GAL ? N/A P16109 11081633
    13907 1g1s:A (1.9) BS03 SIA ? N/A P16109 11081633
    13908 1g1s:A (1.9) BS04 FUC ? N/A P16109 11081633
    13909 1g1s:B (1.9) BS01 peptide ? N/A P16109 11081633
    13910 1g1s:B (1.9) BS02 GAL ? N/A P16109 11081633
    13911 1g1s:B (1.9) BS03 SIA ? N/A P16109 11081633
    13912 1g1s:B (1.9) BS04 FUC ? N/A P16109 11081633
    13913 1g1t:A (1.5) BS01 GAL ? N/A P16581 11081633
    13914 1g1t:A (1.5) BS02 SIA ? N/A P16581 11081633
    13915 1g1t:A (1.5) BS03 FUC ? N/A P16581 11081633
    13916 1g1t:A (1.5) BS04 CA ? N/A P16581 11081633
    13917 1g1x:A (2.6) BS01 rna ? GO:0003735 ... Q5SLP8 10753109
    13918 1g1x:A (2.6) BS02 rna ? GO:0003735 ... Q5SLP8 10753109
    13919 1g1x:B (2.6) BS01 rna ? GO:0003735 ... Q5SJ76 10753109
    13920 1g1x:B (2.6) BS02 rna ? GO:0003735 ... Q5SJ76 10753109
    13921 1g1x:C (2.6) BS01 rna ? GO:0003735 ... Q5SLQ0 10753109
    13922 1g1x:F (2.6) BS01 rna ? GO:0003735 ... Q5SLP8 10753109
    13923 1g1x:F (2.6) BS02 rna ? GO:0003735 ... Q5SLP8 10753109
    13924 1g1x:G (2.6) BS01 rna ? GO:0003735 ... Q5SJ76 10753109
    13925 1g1x:G (2.6) BS02 rna ? GO:0003735 ... Q5SJ76 10753109
    13926 1g1x:H (2.6) BS01 rna ? GO:0003735 ... Q5SLQ0 10753109
    13927 1g1x:H (2.6) BS02 rna ? GO:0003735 ... Q5SLQ0 10753109
    13928 1g1y:A (3.0) BS01 GLC 3.2.1.135 GO:0004553 ... Q08751 11226882
    13929 1g1y:A (3.0) BS02 GLC 3.2.1.135 GO:0004553 ... Q08751 11226882
    13930 1g1y:A (3.0) BS03 GLC 3.2.1.135 GO:0004553 ... Q08751 11226882
    13931 1g1y:B (3.0) BS01 GLC 3.2.1.135 GO:0004553 ... Q08751 11226882
    13932 1g1y:B (3.0) BS02 GLC 3.2.1.135 GO:0004553 ... Q08751 11226882
    13933 1g1y:B (3.0) BS03 GLC 3.2.1.135 GO:0004553 ... Q08751 11226882
    13934 1g20:A (2.2) BS01 CFM 1.18.6.1 GO:0005524 ... P07328 11170380
    13935 1g20:A (2.2) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 11170380
    13936 1g20:B (2.2) BS01 CA 1.18.6.1 GO:0005524 ... P07329 11170380
    13937 1g20:B (2.2) BS02 CLF 1.18.6.1 GO:0005524 ... P07329 11170380
    13938 1g20:B (2.2) BS03 CA 1.18.6.1 GO:0005524 ... P07329 11170380
    13939 1g20:C (2.2) BS01 CFM 1.18.6.1 GO:0005524 ... P07328 11170380
    13940 1g20:C (2.2) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 11170380
    13941 1g20:D (2.2) BS01 CA 1.18.6.1 GO:0005524 ... P07329 11170380
    13942 1g20:D (2.2) BS02 CA 1.18.6.1 GO:0005524 ... P07329 11170380
    13943 1g20:D (2.2) BS03 CLF 1.18.6.1 GO:0005524 ... P07329 11170380
    13944 1g20:E (2.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 11170380
    13945 1g20:F (2.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 11170380
    13946 1g20:G (2.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 11170380
    13947 1g20:H (2.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 11170380
    13948 1g21:A (3.0) BS01 CFM 1.18.6.1 GO:0005524 ... P07328 11170380
    13949 1g21:A (3.0) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 11170380
    13950 1g21:B (3.0) BS01 CLF 1.18.6.1 GO:0005524 ... P07329 11170380
    13951 1g21:B (3.0) BS02 CA 1.18.6.1 GO:0005524 ... P07329 11170380
    13952 1g21:B (3.0) BS03 CA 1.18.6.1 GO:0005524 ... P07329 11170380
    13953 1g21:C (3.0) BS01 CFM 1.18.6.1 GO:0005524 ... P07328 11170380
    13954 1g21:C (3.0) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 11170380
    13955 1g21:D (3.0) BS01 CA 1.18.6.1 GO:0005524 ... P07329 11170380
    13956 1g21:D (3.0) BS02 CA 1.18.6.1 GO:0005524 ... P07329 11170380
    13957 1g21:D (3.0) BS03 CLF 1.18.6.1 GO:0005524 ... P07329 11170380
    13958 1g21:E (3.0) BS01 MG 1.18.6.1 GO:0005524 ... P00459 11170380
    13959 1g21:E (3.0) BS02 ATP 1.18.6.1 GO:0005524 ... P00459 11170380
    13960 1g21:E (3.0) BS03 SF4 1.18.6.1 GO:0005524 ... P00459 11170380
    13961 1g21:F (3.0) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 11170380
    13962 1g21:F (3.0) BS02 ATP 1.18.6.1 GO:0005524 ... P00459 11170380
    13963 1g21:G (3.0) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 11170380
    13964 1g21:G (3.0) BS02 ATP 1.18.6.1 GO:0005524 ... P00459 11170380
    13965 1g21:G (3.0) BS03 MG 1.18.6.1 GO:0005524 ... P00459 11170380
    13966 1g21:H (3.0) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 11170380
    13967 1g21:H (3.0) BS02 ATP 1.18.6.1 GO:0005524 ... P00459 11170380
    13968 1g21:H (3.0) BS03 ATP 1.18.6.1 GO:0005524 ... P00459 11170380
    13969 1g23:A (2.8) BS01 G1P 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13970 1g23:B (2.8) BS01 G1P 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13971 1g23:C (2.8) BS01 G1P 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13972 1g23:D (2.8) BS01 G1P 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13973 1g23:E (2.8) BS01 G1P 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13974 1g23:F (2.8) BS01 G1P 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13975 1g23:G (2.8) BS01 G1P 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13976 1g23:H (2.8) BS01 G1P 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13977 1g25:A (-1.00) BS01 ZN ? N/A P51948 11056162
    13978 1g25:A (-1.00) BS02 ZN ? N/A P51948 11056162
    13979 1g27:A (2.1) BS01 BB1 3.5.1.88 GO:0005515 ... P0A6K3 11158755 MOAD: ic50=7nM
    PDBbind: -logKd/Ki=8.15, IC50=7nM
    13980 1g27:B (2.1) BS01 BB1 3.5.1.88 GO:0005515 ... P0A6K3 11158755 MOAD: ic50=7nM
    13981 1g27:C (2.1) BS01 BB1 3.5.1.88 GO:0005515 ... P0A6K3 11158755 MOAD: ic50=7nM
    13982 1g28:A (2.73) BS01 FMN 2.7.11.1 N/A Q9ZWQ6 11248020
    13983 1g28:B (2.73) BS01 FMN 2.7.11.1 N/A Q9ZWQ6 11248020
    13984 1g28:C (2.73) BS01 FMN 2.7.11.1 N/A Q9ZWQ6 11248020
    13985 1g28:D (2.73) BS01 FMN 2.7.11.1 N/A Q9ZWQ6 11248020
    13986 1g29:1 (1.9) BS01 MG 7.5.2.1 GO:0005524 ... Q9YGA6 11080142
    13987 1g29:1 (1.9) BS02 MG 7.5.2.1 GO:0005524 ... Q9YGA6 11080142
    13988 1g29:1 (1.9) BS03 POP 7.5.2.1 GO:0005524 ... Q9YGA6 11080142
    13989 1g29:1 (1.9) BS04 MG 7.5.2.1 GO:0005524 ... Q9YGA6 11080142
    13990 1g29:2 (1.9) BS01 MG 7.5.2.1 GO:0005524 ... Q9YGA6 11080142
    13991 1g29:2 (1.9) BS02 MG 7.5.2.1 GO:0005524 ... Q9YGA6 11080142
    13992 1g29:2 (1.9) BS03 MG 7.5.2.1 GO:0005524 ... Q9YGA6 11080142
    13993 1g29:2 (1.9) BS04 MG 7.5.2.1 GO:0005524 ... Q9YGA6 11080142
    13994 1g29:2 (1.9) BS05 POP 7.5.2.1 GO:0005524 ... Q9YGA6 11080142
    13995 1g2a:A (1.75) BS01 BB2 3.5.1.88 GO:0005515 ... P0A6K3 11158755 MOAD: ic50=10nM
    PDBbind: -logKd/Ki=8.00, IC50=10nM
    13996 1g2a:B (1.75) BS01 BB2 3.5.1.88 GO:0005515 ... P0A6K3 11158755 MOAD: ic50=10nM
    13997 1g2a:C (1.75) BS01 BB2 3.5.1.88 GO:0005515 ... P0A6K3 11158755 MOAD: ic50=10nM
    13998 1g2d:C (2.2) BS01 dna ? N/A P08046 11587646
    13999 1g2d:C (2.2) BS02 dna ? N/A P08046 11587646
    14000 1g2d:C (2.2) BS03 ZN ? N/A P08046 11587646
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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